RNA–Protein interactions for RNA: ENST00000554079.1

SIX4-202, Transcript of SIX homeobox 4, humanhuman

TSL 1 (best)

Gene SIX4, Length 2,003 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SIX4-202ENST00000554079 CYP46A1Q9Y6A2 500 aa10.86□□□□□ -0.67
SIX4-202ENST00000554079 CD163L1Q9NR16 1453 aa10.86□□□□□ -0.67
SIX4-202ENST00000554079 FRMPD1Q5SYB0 1578 aa10.86□□□□□ -0.67
SIX4-202ENST00000554079 MYH8P13535 1937 aa10.86□□□□□ -0.67
SIX4-202ENST00000554079 ATP1A3P13637 1013 aa10.85□□□□□ -0.67
SIX4-202ENST00000554079 SF3B2Q13435 895 aaKnown RBP10.85□□□□□ -0.67
SIX4-202ENST00000554079 CCDC96Q2M329 555 aa10.85□□□□□ -0.67
SIX4-202ENST00000554079 MYSM1Q5VVJ2 828 aa10.85□□□□□ -0.67
SIX4-202ENST00000554079 PRPF40BQ6NWY9 871 aaKnown RBP10.85□□□□□ -0.67
SIX4-202ENST00000554079 CYB5D1Q6P9G0 228 aa10.85□□□□□ -0.67
SIX4-202ENST00000554079 DNAJC14Q6Y2X3 702 aaPredicted RBP10.85□□□□□ -0.67
SIX4-202ENST00000554079 BRAPQ7Z569 592 aa10.85□□□□□ -0.67
SIX4-202ENST00000554079 CADPS2Q86UW7 1296 aa10.85□□□□□ -0.67
SIX4-202ENST00000554079 HOOK2Q96ED9 719 aa10.85□□□□□ -0.67
SIX4-202ENST00000554079 CENPHQ9H3R5 247 aa10.85□□□□□ -0.67
SIX4-202ENST00000554079 PRDM16Q9HAZ2 1276 aa10.85□□□□□ -0.67
SIX4-202ENST00000554079 CFAP45Q9UL16 551 aa10.85□□□□□ -0.67
SIX4-202ENST00000554079 MYO6Q9UM54 1294 aa10.85□□□□□ -0.67
SIX4-202ENST00000554079 XRN1Q8IZH2 1706 aaKnown RBP10.85□□□□□ -0.67
SIX4-202ENST00000554079 ARHGEF28Q8N1W1 1705 aaKnown RBP10.85□□□□□ -0.67
SIX4-202ENST00000554079 TMEM232C9JQI7 657 aa10.85□□□□□ -0.67
SIX4-202ENST00000554079 IKBKBO14920 756 aa10.85□□□□□ -0.67
SIX4-202ENST00000554079 CBFA2T2O43439 604 aa10.85□□□□□ -0.67
SIX4-202ENST00000554079 PPP1R12BO60237 982 aaPredicted RBP10.85□□□□□ -0.67
SIX4-202ENST00000554079 ZEB2O60315 1214 aa10.85□□□□□ -0.67
SIX4-202ENST00000554079 SMNDC1O75940 238 aaKnown RBP eCLIP10.85□□□□□ -0.67
SIX4-202ENST00000554079 RTN3O95197 1032 aaPredicted RBP10.85□□□□□ -0.67
SIX4-202ENST00000554079 TFRCP02786 760 aaKnown RBP10.85□□□□□ -0.67
SIX4-202ENST00000554079 LMOD1P29536 600 aaPredicted RBP10.85□□□□□ -0.67
SIX4-202ENST00000554079 GBP2P32456 591 aaPredicted RBP10.85□□□□□ -0.67
SIX4-202ENST00000554079 NAP1L1P55209 391 aaKnown RBP10.85□□□□□ -0.67
SIX4-202ENST00000554079 DRP2Q13474 957 aa10.85□□□□□ -0.67
SIX4-202ENST00000554079 E2F5Q15329 346 aa10.85□□□□□ -0.67
SIX4-202ENST00000554079 NFE2L2Q16236 605 aa10.85□□□□□ -0.67
SIX4-202ENST00000554079 MIS18BP1Q6P0N0 1132 aa10.85□□□□□ -0.67
SIX4-202ENST00000554079 FMR1NBQ8N0W7 255 aaPredicted RBP10.85□□□□□ -0.67
SIX4-202ENST00000554079 PSMD1Q99460 953 aa10.85□□□□□ -0.67
SIX4-202ENST00000554079 CRACR2AQ9BSW2 395 aa10.85□□□□□ -0.67
SIX4-202ENST00000554079 TMX4Q9H1E5 349 aaPredicted RBP10.85□□□□□ -0.67
SIX4-202ENST00000554079 CHCHD3Q9NX63 227 aaKnown RBP10.85□□□□□ -0.67
SIX4-202ENST00000554079 TBC1D2BQ9UPU7 963 aa10.85□□□□□ -0.67
SIX4-202ENST00000554079 CTAGE15A4D2H0 777 aa10.84□□□□□ -0.67
SIX4-202ENST00000554079 BIN1O00499 593 aa10.84□□□□□ -0.67
SIX4-202ENST00000554079 NDUFAB1O14561 156 aa10.84□□□□□ -0.67
SIX4-202ENST00000554079 MAFGO15525 162 aa10.84□□□□□ -0.67
SIX4-202ENST00000554079 AHCYL1O43865 530 aa10.84□□□□□ -0.67
SIX4-202ENST00000554079 FESP07332 822 aa10.84□□□□□ -0.67
SIX4-202ENST00000554079 CTAGE8P0CG41 777 aa10.84□□□□□ -0.67
SIX4-202ENST00000554079 SLC8A1P32418 973 aa10.84□□□□□ -0.67
SIX4-202ENST00000554079 NLRP12P59046 1061 aa10.84□□□□□ -0.67
SIX4-202ENST00000554079 WHAMMP3Q1A5X7 153 aa10.84□□□□□ -0.67
SIX4-202ENST00000554079 MICALCLQ6ZW33 695 aa10.84□□□□□ -0.67
SIX4-202ENST00000554079 CTAGE6Q86UF2 777 aa10.84□□□□□ -0.67
SIX4-202ENST00000554079 NCAPG2Q86XI2 1143 aa10.84□□□□□ -0.67
SIX4-202ENST00000554079 CTAGE4Q8IX94 777 aa10.84□□□□□ -0.67
SIX4-202ENST00000554079 FUKQ8N0W3 1084 aa10.84□□□□□ -0.67
SIX4-202ENST00000554079 DESI2Q9BSY9 194 aa10.84□□□□□ -0.67
SIX4-202ENST00000554079 MMTAG2Q9BU76 263 aaKnown RBP10.84□□□□□ -0.67
SIX4-202ENST00000554079 INTS13Q9NVM9 706 aa10.84□□□□□ -0.67
SIX4-202ENST00000554079 KIAA1468Q9P260 1216 aa10.84□□□□□ -0.67
SIX4-202ENST00000554079 GGA2Q9UJY4 613 aa10.84□□□□□ -0.67
SIX4-202ENST00000554079 PCDHGA4Q9Y5G9 962 aa10.84□□□□□ -0.67
SIX4-202ENST00000554079 KDRP35968 1356 aa10.84□□□□□ -0.67
SIX4-202ENST00000554079 FCHSD2O94868 740 aa10.84□□□□□ -0.67
SIX4-202ENST00000554079 RPSAP08865 295 aaKnown RBP10.84□□□□□ -0.67
SIX4-202ENST00000554079 PYGBP11216 843 aa10.84□□□□□ -0.67
SIX4-202ENST00000554079 TOP1P11387 765 aaKnown RBP10.84□□□□□ -0.67
SIX4-202ENST00000554079 UBASH3AP57075 661 aa10.84□□□□□ -0.67
SIX4-202ENST00000554079 THEMIS2Q5TEJ8 643 aa10.84□□□□□ -0.67
SIX4-202ENST00000554079 TC2NQ8N9U0 490 aa10.84□□□□□ -0.67
SIX4-202ENST00000554079 FSIP1Q8NA03 581 aa10.84□□□□□ -0.67
SIX4-202ENST00000554079 RSRC1Q96IZ7 334 aaKnown RBP10.84□□□□□ -0.67
SIX4-202ENST00000554079 ZNF232Q9UNY5 417 aa10.84□□□□□ -0.67
SIX4-202ENST00000554079 ARHGAP5Q13017 1502 aa10.83□□□□□ -0.68
SIX4-202ENST00000554079 DIAPH1O60610 1272 aaKnown RBP10.83□□□□□ -0.68
SIX4-202ENST00000554079 RAPGEF3O95398 923 aa10.83□□□□□ -0.68
SIX4-202ENST00000554079 IMPDH2P12268 514 aa10.83□□□□□ -0.68
SIX4-202ENST00000554079 CDR1P51861 262 aa10.83□□□□□ -0.68
SIX4-202ENST00000554079 DCTN1Q14203 1278 aa10.83□□□□□ -0.68
SIX4-202ENST00000554079 ACCSLQ4AC99 568 aa10.83□□□□□ -0.68
SIX4-202ENST00000554079 HSP90AB2PQ58FF8 381 aa10.83□□□□□ -0.68
SIX4-202ENST00000554079 CWF19L1Q69YN2 538 aaKnown RBP10.83□□□□□ -0.68
SIX4-202ENST00000554079 CAPRIN2Q6IMN6 1127 aaKnown RBP10.83□□□□□ -0.68
SIX4-202ENST00000554079 BZW1Q7L1Q6 419 aaKnown RBP10.83□□□□□ -0.68
SIX4-202ENST00000554079 MFN1Q8IWA4 741 aa10.83□□□□□ -0.68
SIX4-202ENST00000554079 RBM12BQ8IXT5 1001 aaKnown RBP10.83□□□□□ -0.68
SIX4-202ENST00000554079 PIK3R5Q8WYR1 880 aa10.83□□□□□ -0.68
SIX4-202ENST00000554079 EZH1Q92800 747 aaPredicted RBP10.83□□□□□ -0.68
SIX4-202ENST00000554079 FAM163AQ96GL9 167 aaPredicted RBP10.83□□□□□ -0.68
SIX4-202ENST00000554079 SUDS3Q9H7L9 328 aaPredicted RBP10.83□□□□□ -0.68
SIX4-202ENST00000554079 RIMS2Q9UQ26 1411 aa10.83□□□□□ -0.68
SIX4-202ENST00000554079 MAP2P11137 1827 aaKnown RBP10.83□□□□□ -0.68
SIX4-202ENST00000554079 CAMSAP1Q5T5Y3 1602 aa10.82□□□□□ -0.68
SIX4-202ENST00000554079 PRKAR2BP31323 418 aa10.82□□□□□ -0.68
SIX4-202ENST00000554079 PDE6BP35913 854 aa10.82□□□□□ -0.68
SIX4-202ENST00000554079 USP14P54578 494 aa10.82□□□□□ -0.68
SIX4-202ENST00000554079 PTH1RQ03431 593 aa10.82□□□□□ -0.68
SIX4-202ENST00000554079 COL9A3Q14050 684 aaPredicted RBP10.82□□□□□ -0.68
SIX4-202ENST00000554079 NAA35Q5VZE5 725 aa10.82□□□□□ -0.68
SIX4-202ENST00000554079 C6orf89Q6UWU4 347 aa10.82□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 41.3 ms