RNA–Protein interactions for RNA: ENST00000553950.5

SHMT2-210, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 584 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-210ENST00000553950 GIMAP6Q6P9H5 292 aa17.35■□□□□ 0.37
SHMT2-210ENST00000553950 ZNF589Q86UQ0 364 aaPredicted RBP17.35■□□□□ 0.37
SHMT2-210ENST00000553950 MIGA1Q8NAN2 632 aa17.35■□□□□ 0.37
SHMT2-210ENST00000553950 MTMR14Q8NCE2 650 aa17.35■□□□□ 0.37
SHMT2-210ENST00000553950 RIOK1Q9BRS2 568 aaKnown RBP17.35■□□□□ 0.37
SHMT2-210ENST00000553950 MXD3Q9BW11 206 aa17.35■□□□□ 0.37
SHMT2-210ENST00000553950 CTNNA3Q9UI47 895 aa17.35■□□□□ 0.37
SHMT2-210ENST00000553950 GJA3Q9Y6H8 435 aa17.35■□□□□ 0.37
SHMT2-210ENST00000553950 WDR90Q96KV7 1748 aa17.35■□□□□ 0.37
SHMT2-210ENST00000553950 MYO1BO43795 1136 aa17.34■□□□□ 0.37
SHMT2-210ENST00000553950 LMOD1P29536 600 aaPredicted RBP17.34■□□□□ 0.37
SHMT2-210ENST00000553950 RBM5P52756 815 aaKnown RBP eCLIP17.34■□□□□ 0.37
SHMT2-210ENST00000553950 GRIK5Q16478 980 aa17.34■□□□□ 0.37
SHMT2-210ENST00000553950 ADGRA1Q86SQ6 560 aa17.34■□□□□ 0.37
SHMT2-210ENST00000553950 LCORLQ8N3X6 602 aa17.34■□□□□ 0.37
SHMT2-210ENST00000553950 STRBPQ96SI9 672 aaKnown RBP17.34■□□□□ 0.37
SHMT2-210ENST00000553950 SEC62Q99442 399 aaKnown RBP17.34■□□□□ 0.37
SHMT2-210ENST00000553950 AATFQ9NY61 560 aaKnown RBP eCLIP17.34■□□□□ 0.37
SHMT2-210ENST00000553950 TMOD2Q9NZR1 351 aa17.34■□□□□ 0.37
SHMT2-210ENST00000553950 GMPSP49915 693 aaPredicted RBP17.33■□□□□ 0.36
SHMT2-210ENST00000553950 SCNN1DP51172 638 aa17.33■□□□□ 0.36
SHMT2-210ENST00000553950 ZNF280AP59817 542 aaPredicted RBP17.33■□□□□ 0.36
SHMT2-210ENST00000553950 DLGAP5Q15398 846 aa17.33■□□□□ 0.36
SHMT2-210ENST00000553950 CCDC129Q6ZRS4 1044 aa17.33■□□□□ 0.36
SHMT2-210ENST00000553950 AMOTL1Q8IY63 956 aa17.33■□□□□ 0.36
SHMT2-210ENST00000553950 LSG1Q9H089 658 aaKnown RBP17.33■□□□□ 0.36
SHMT2-210ENST00000553950 ARMT1Q9H993 441 aa17.33■□□□□ 0.36
SHMT2-210ENST00000553950 ATP8A2Q9NTI2 1148 aa17.33■□□□□ 0.36
SHMT2-210ENST00000553950 SLC4A4Q9Y6R1 1079 aa17.33■□□□□ 0.36
SHMT2-210ENST00000553950 MYH8P13535 1937 aa17.33■□□□□ 0.36
SHMT2-210ENST00000553950 COL2A1P02458 1487 aaPredicted RBP17.32■□□□□ 0.36
SHMT2-210ENST00000553950 H7C1D1 291 aa17.32■□□□□ 0.36
SHMT2-210ENST00000553950 CHGBP05060 677 aa17.32■□□□□ 0.36
SHMT2-210ENST00000553950 HSPD1P10809 573 aaKnown RBP17.32■□□□□ 0.36
SHMT2-210ENST00000553950 CFAP100Q494V2 611 aa17.32■□□□□ 0.36
SHMT2-210ENST00000553950 TEX11Q8IYF3 940 aa17.32■□□□□ 0.36
SHMT2-210ENST00000553950 IL25Q9H293 177 aa17.32■□□□□ 0.36
SHMT2-210ENST00000553950 ZBTB12Q9Y330 459 aaPredicted RBP17.32■□□□□ 0.36
SHMT2-210ENST00000553950 SPDYE2BA6NHP3 402 aa17.31■□□□□ 0.36
SHMT2-210ENST00000553950 PATL2C9JE40 543 aaKnown RBP17.31■□□□□ 0.36
SHMT2-210ENST00000553950 APPP05067 770 aa17.31■□□□□ 0.36
SHMT2-210ENST00000553950 SPDYE6P0CI01 402 aa17.31■□□□□ 0.36
SHMT2-210ENST00000553950 USP5P45974 858 aa17.31■□□□□ 0.36
SHMT2-210ENST00000553950 TDO2P48775 406 aa17.31■□□□□ 0.36
SHMT2-210ENST00000553950 ALX1Q15699 326 aa17.31■□□□□ 0.36
SHMT2-210ENST00000553950 SLFNL1Q499Z3 407 aa17.31■□□□□ 0.36
SHMT2-210ENST00000553950 MICALL2Q8IY33 904 aa17.31■□□□□ 0.36
SHMT2-210ENST00000553950 MAP4K1Q92918 833 aa17.31■□□□□ 0.36
SHMT2-210ENST00000553950 NAPBQ9H115 298 aa17.31■□□□□ 0.36
SHMT2-210ENST00000553950 MYOZ2Q9NPC6 264 aa17.31■□□□□ 0.36
SHMT2-210ENST00000553950 ARPP21Q9UBL0 812 aaPredicted RBP17.31■□□□□ 0.36
SHMT2-210ENST00000553950 NPM3O75607 178 aaKnown RBP17.3■□□□□ 0.36
SHMT2-210ENST00000553950 ZKSCAN1P17029 563 aaPredicted RBP17.3■□□□□ 0.36
SHMT2-210ENST00000553950 ANAPC15P60006 121 aa17.3■□□□□ 0.36
SHMT2-210ENST00000553950 IL27Q8NEV9 243 aa17.3■□□□□ 0.36
SHMT2-210ENST00000553950 L3MBTL3Q96JM7 780 aaPredicted RBP17.3■□□□□ 0.36
SHMT2-210ENST00000553950 USP26Q9BXU7 913 aa17.3■□□□□ 0.36
SHMT2-210ENST00000553950 C22orf23Q9BZE7 217 aa17.3■□□□□ 0.36
SHMT2-210ENST00000553950 GPRC5DQ9NZD1 345 aa17.3■□□□□ 0.36
SHMT2-210ENST00000553950 RBM8AQ9Y5S9 174 aaKnown RBP17.3■□□□□ 0.36
SHMT2-210ENST00000553950 IQCA1LA6NCM1 817 aa17.29■□□□□ 0.36
SHMT2-210ENST00000553950 DYNLL1P63167 89 aaKnown RBP17.29■□□□□ 0.36
SHMT2-210ENST00000553950 IMMTQ16891 758 aaKnown RBP17.29■□□□□ 0.36
SHMT2-210ENST00000553950 SH3RF3Q8TEJ3 882 aaPredicted RBP17.29■□□□□ 0.36
SHMT2-210ENST00000553950 CNOT7Q9UIV1 285 aaKnown RBP17.29■□□□□ 0.36
SHMT2-210ENST00000553950 TAOK2Q9UL54 1235 aa17.29■□□□□ 0.36
SHMT2-210ENST00000553950 GLTPD2A6NH11 291 aa17.28■□□□□ 0.36
SHMT2-210ENST00000553950 SEC24BO95487 1268 aa17.28■□□□□ 0.36
SHMT2-210ENST00000553950 HSPA4P34932 840 aa17.28■□□□□ 0.36
SHMT2-210ENST00000553950 RBM25P49756 843 aaKnown RBP17.28■□□□□ 0.36
SHMT2-210ENST00000553950 NT5C2P49902 561 aa17.28■□□□□ 0.36
SHMT2-210ENST00000553950 RHBDL3P58872 404 aa17.28■□□□□ 0.36
SHMT2-210ENST00000553950 TNFAIP1Q13829 316 aa17.28■□□□□ 0.36
SHMT2-210ENST00000553950 KRT32Q14532 448 aa17.28■□□□□ 0.36
SHMT2-210ENST00000553950 KIF4BQ2VIQ3 1234 aa17.28■□□□□ 0.36
SHMT2-210ENST00000553950 FKBP1CQ5VVH2 108 aa17.28■□□□□ 0.36
SHMT2-210ENST00000553950 APOBEC3HQ6NTF7 200 aaKnown RBP17.28■□□□□ 0.36
SHMT2-210ENST00000553950 TBC1D32Q96NH3 1257 aa17.28■□□□□ 0.36
SHMT2-210ENST00000553950 USP40Q9NVE5 1235 aa17.28■□□□□ 0.36
SHMT2-210ENST00000553950 SRCAPQ6ZRS2 3230 aa17.28■□□□□ 0.36
SHMT2-210ENST00000553950 FLT1P17948 1338 aa17.27■□□□□ 0.36
SHMT2-210ENST00000553950 GSG1L2A8MUP6 293 aa17.27■□□□□ 0.36
SHMT2-210ENST00000553950 SLC3A2P08195 630 aaKnown RBP17.27■□□□□ 0.36
SHMT2-210ENST00000553950 PCP11498 1178 aaKnown RBP17.27■□□□□ 0.36
SHMT2-210ENST00000553950 PTH1RQ03431 593 aa17.27■□□□□ 0.36
SHMT2-210ENST00000553950 VPS53Q5VIR6 699 aa17.27■□□□□ 0.36
SHMT2-210ENST00000553950 CDC42EP5Q6NZY7 148 aa17.27■□□□□ 0.36
SHMT2-210ENST00000553950 IFNL3Q8IZI9 196 aa17.27■□□□□ 0.36
SHMT2-210ENST00000553950 IDI2Q9BXS1 227 aa17.27■□□□□ 0.36
SHMT2-210ENST00000553950 ADARB2Q9NS39 739 aaKnown RBP17.27■□□□□ 0.36
SHMT2-210ENST00000553950 DDNO94850 711 aaPredicted RBP17.26■□□□□ 0.35
SHMT2-210ENST00000553950 TNNI2P48788 182 aa17.26■□□□□ 0.35
SHMT2-210ENST00000553950 SPDYE2Q495Y8 402 aa17.26■□□□□ 0.35
SHMT2-210ENST00000553950 SDR42E1Q8WUS8 393 aa17.26■□□□□ 0.35
SHMT2-210ENST00000553950 ZBED3Q96IU2 234 aaPredicted RBP17.26■□□□□ 0.35
SHMT2-210ENST00000553950 EPB41L4AQ9HCS5 686 aaPredicted RBP17.26■□□□□ 0.35
SHMT2-210ENST00000553950 DCP1AQ9NPI6 582 aaPredicted RBP17.26■□□□□ 0.35
SHMT2-210ENST00000553950 ROBO3Q96MS0 1386 aa17.26■□□□□ 0.35
SHMT2-210ENST00000553950 ZNF213O14771 459 aa17.25■□□□□ 0.35
SHMT2-210ENST00000553950 ENTPD3O75355 529 aa17.25■□□□□ 0.35
Retrieved 100 of 20,778 RNA–protein pairs in 93 ms