RNA–Protein interactions for RNA: ENST00000553280.1

SCFD1-209, Transcript of sec1 family domain containing 1, humanhuman

TSL 2

Gene SCFD1, Length 574 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-209ENST00000553280 GARTP22102 1010 aa7.59□□□□□ -1.19
SCFD1-209ENST00000553280 LIG3P49916 1009 aa7.59□□□□□ -1.19
SCFD1-209ENST00000553280 MAP3K11Q16584 847 aa7.59□□□□□ -1.19
SCFD1-209ENST00000553280 PMFBP1Q8TBY8 1022 aa7.59□□□□□ -1.19
SCFD1-209ENST00000553280 HHIPQ96QV1 700 aa7.59□□□□□ -1.19
SCFD1-209ENST00000553280 SSBP4Q9BWG4 385 aaPredicted RBP7.59□□□□□ -1.19
SCFD1-209ENST00000553280 PBX4Q9BYU1 374 aa7.59□□□□□ -1.19
SCFD1-209ENST00000553280 SEC31BQ9NQW1 1179 aa7.59□□□□□ -1.19
SCFD1-209ENST00000553280 METTL12A8MUP2 240 aa7.58□□□□□ -1.2
SCFD1-209ENST00000553280 ENC1O14682 589 aa7.58□□□□□ -1.2
SCFD1-209ENST00000553280 CELA3AP09093 270 aa7.58□□□□□ -1.2
SCFD1-209ENST00000553280 CDC27P30260 824 aa7.58□□□□□ -1.2
SCFD1-209ENST00000553280 RPS26P62854 115 aaKnown RBP7.58□□□□□ -1.2
SCFD1-209ENST00000553280 LMNB2Q03252 620 aa7.58□□□□□ -1.2
SCFD1-209ENST00000553280 COL9A2Q14055 689 aaPredicted RBP7.58□□□□□ -1.2
SCFD1-209ENST00000553280 PRSS36Q5K4E3 855 aa7.58□□□□□ -1.2
SCFD1-209ENST00000553280 ZMYM1Q5SVZ6 1142 aa7.58□□□□□ -1.2
SCFD1-209ENST00000553280 AGMOQ6ZNB7 445 aa7.58□□□□□ -1.2
SCFD1-209ENST00000553280 MEGF10Q96KG7 1140 aa7.58□□□□□ -1.2
SCFD1-209ENST00000553280 SH2B1Q9NRF2 756 aaPredicted RBP7.58□□□□□ -1.2
SCFD1-209ENST00000553280 TLR6Q9Y2C9 796 aa7.58□□□□□ -1.2
SCFD1-209ENST00000553280 SUPT16HQ9Y5B9 1047 aaKnown RBP7.58□□□□□ -1.2
SCFD1-209ENST00000553280 PF4P02776 101 aa7.57□□□□□ -1.2
SCFD1-209ENST00000553280 HSP90B1P14625 803 aaKnown RBP7.57□□□□□ -1.2
SCFD1-209ENST00000553280 SOX9P48436 509 aa7.57□□□□□ -1.2
SCFD1-209ENST00000553280 NASPP49321 788 aaPredicted RBP7.57□□□□□ -1.2
SCFD1-209ENST00000553280 CAMK2GQ13555 558 aaPredicted RBP7.57□□□□□ -1.2
SCFD1-209ENST00000553280 TTBK2Q6IQ55 1244 aa7.57□□□□□ -1.2
SCFD1-209ENST00000553280 CACTIN-AS1Q8N1I8 211 aa7.57□□□□□ -1.2
SCFD1-209ENST00000553280 AGGF1Q8N302 714 aaeCLIP7.57□□□□□ -1.2
SCFD1-209ENST00000553280 Q8N3U1 123 aa7.57□□□□□ -1.2
SCFD1-209ENST00000553280 GALNT11Q8NCW6 608 aa7.57□□□□□ -1.2
SCFD1-209ENST00000553280 POP1Q99575 1024 aaKnown RBP7.57□□□□□ -1.2
SCFD1-209ENST00000553280 CARD10Q9BWT7 1032 aa7.57□□□□□ -1.2
SCFD1-209ENST00000553280 MRPL18Q9H0U6 180 aaKnown RBP7.57□□□□□ -1.2
SCFD1-209ENST00000553280 MUC3BQ9H195 1237 aa7.57□□□□□ -1.2
SCFD1-209ENST00000553280 ZNF576Q9H609 170 aa7.57□□□□□ -1.2
SCFD1-209ENST00000553280 ZSWIM4Q9H7M6 989 aa7.57□□□□□ -1.2
SCFD1-209ENST00000553280 AKTIPQ9H8T0 292 aa7.57□□□□□ -1.2
SCFD1-209ENST00000553280 GINM1Q9NU53 330 aa7.57□□□□□ -1.2
SCFD1-209ENST00000553280 EFR3BQ9Y2G0 817 aa7.57□□□□□ -1.2
SCFD1-209ENST00000553280 TLDC2A0PJX2 215 aa7.56□□□□□ -1.2
SCFD1-209ENST00000553280 SSBP05455 408 aaKnown RBP eCLIP7.56□□□□□ -1.2
SCFD1-209ENST00000553280 EPHA1P21709 976 aa7.56□□□□□ -1.2
SCFD1-209ENST00000553280 FAM160A1Q05DH4 1040 aa7.56□□□□□ -1.2
SCFD1-209ENST00000553280 FAAP100Q0VG06 881 aa7.56□□□□□ -1.2
SCFD1-209ENST00000553280 XP32Q5T750 250 aa7.56□□□□□ -1.2
SCFD1-209ENST00000553280 NBPF6Q5VWK0 638 aa7.56□□□□□ -1.2
SCFD1-209ENST00000553280 CKAP2LQ8IYA6 745 aa7.56□□□□□ -1.2
SCFD1-209ENST00000553280 ASAP3Q8TDY4 903 aa7.56□□□□□ -1.2
SCFD1-209ENST00000553280 NBPF4Q96M43 638 aa7.56□□□□□ -1.2
SCFD1-209ENST00000553280 OSBPL2Q9H1P3 480 aa7.56□□□□□ -1.2
SCFD1-209ENST00000553280 PIF1Q9H611 641 aa7.56□□□□□ -1.2
SCFD1-209ENST00000553280 STRIP2Q9ULQ0 834 aa7.56□□□□□ -1.2
SCFD1-209ENST00000553280 F8W735 103 aaPredicted RBP7.55□□□□□ -1.2
SCFD1-209ENST00000553280 H2AFB1P0C5Y9 115 aa7.55□□□□□ -1.2
SCFD1-209ENST00000553280 H2AFB2P0C5Z0 115 aa7.55□□□□□ -1.2
SCFD1-209ENST00000553280 PTPRAP18433 802 aa7.55□□□□□ -1.2
SCFD1-209ENST00000553280 FOXD4L6Q3SYB3 417 aaPredicted RBP7.55□□□□□ -1.2
SCFD1-209ENST00000553280 FOXD4L3Q6VB84 417 aaPredicted RBP7.55□□□□□ -1.2
SCFD1-209ENST00000553280 CCDC84Q86UT8 332 aaPredicted RBP7.55□□□□□ -1.2
SCFD1-209ENST00000553280 MAP4K3Q8IVH8 894 aa7.55□□□□□ -1.2
SCFD1-209ENST00000553280 GOLM1Q8NBJ4 401 aa7.55□□□□□ -1.2
SCFD1-209ENST00000553280 BSNDQ8WZ55 320 aa7.55□□□□□ -1.2
SCFD1-209ENST00000553280 TMEM39AQ9NV64 488 aa7.55□□□□□ -1.2
SCFD1-209ENST00000553280 UBP1Q9NZI7 540 aa7.55□□□□□ -1.2
SCFD1-209ENST00000553280 ROBO2Q9HCK4 1378 aa7.55□□□□□ -1.2
SCFD1-209ENST00000553280 FAM177BA6PVY3 158 aa7.54□□□□□ -1.2
SCFD1-209ENST00000553280 PAGE1O75459 146 aa7.54□□□□□ -1.2
SCFD1-209ENST00000553280 WISP1O95388 367 aa7.54□□□□□ -1.2
SCFD1-209ENST00000553280 TFE3P19532 575 aaPredicted RBP7.54□□□□□ -1.2
SCFD1-209ENST00000553280 APOBRQ0VD83 1088 aa7.54□□□□□ -1.2
SCFD1-209ENST00000553280 SNAP47Q5SQN1 464 aa7.54□□□□□ -1.2
SCFD1-209ENST00000553280 FAM196AQ6ZSG2 479 aa7.54□□□□□ -1.2
SCFD1-209ENST00000553280 TRIM42Q8IWZ5 723 aa7.54□□□□□ -1.2
SCFD1-209ENST00000553280 ZNF408Q9H9D4 720 aa7.54□□□□□ -1.2
SCFD1-209ENST00000553280 KCNK4Q9NYG8 393 aa7.54□□□□□ -1.2
SCFD1-209ENST00000553280 TMA7Q9Y2S6 64 aaKnown RBP7.54□□□□□ -1.2
SCFD1-209ENST00000553280 FSCN2O14926 492 aa7.53□□□□□ -1.2
SCFD1-209ENST00000553280 GLB1P16278 677 aa7.53□□□□□ -1.2
SCFD1-209ENST00000553280 CD68P34810 354 aaPredicted RBP7.53□□□□□ -1.2
SCFD1-209ENST00000553280 ETFBP38117 255 aa7.53□□□□□ -1.2
SCFD1-209ENST00000553280 PPP2R3AQ06190 1150 aa7.53□□□□□ -1.2
SCFD1-209ENST00000553280 FAM117BQ6P1L5 589 aa7.53□□□□□ -1.2
SCFD1-209ENST00000553280 SLITRK4Q8IW52 837 aa7.53□□□□□ -1.2
SCFD1-209ENST00000553280 TMEM130Q8N3G9 435 aa7.53□□□□□ -1.2
SCFD1-209ENST00000553280 CLEC4MQ9H2X3 399 aaPredicted RBP7.53□□□□□ -1.2
SCFD1-209ENST00000553280 GPN3Q9UHW5 284 aaPredicted RBP7.53□□□□□ -1.2
SCFD1-209ENST00000553280 SAMM50Q9Y512 469 aa7.53□□□□□ -1.2
SCFD1-209ENST00000553280 SCO2A0A1W2PP80 73 aa7.52□□□□□ -1.21
SCFD1-209ENST00000553280 DDX3YO15523 660 aaKnown RBP7.52□□□□□ -1.21
SCFD1-209ENST00000553280 BMP6P22004 513 aa7.52□□□□□ -1.21
SCFD1-209ENST00000553280 CRKP46108 304 aa7.52□□□□□ -1.21
SCFD1-209ENST00000553280 PCNX4Q63HM2 1172 aa7.52□□□□□ -1.21
SCFD1-209ENST00000553280 ACAD11Q709F0 780 aa7.52□□□□□ -1.21
SCFD1-209ENST00000553280 DCAF11Q8TEB1 546 aa7.52□□□□□ -1.21
SCFD1-209ENST00000553280 NKD1Q969G9 470 aa7.52□□□□□ -1.21
SCFD1-209ENST00000553280 MKL1Q969V6 931 aa7.52□□□□□ -1.21
SCFD1-209ENST00000553280 ADAM19Q9H013 955 aa7.52□□□□□ -1.21
SCFD1-209ENST00000553280 B3GALT4O96024 378 aa7.51□□□□□ -1.21
Retrieved 100 of 20,778 RNA–protein pairs in 14 ms