RNA–Protein interactions for RNA: ENST00000552973.1

NEK3-204, Transcript of NIMA related kinase 3, humanhuman

TSL 5

Gene NEK3, Length 941 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEK3-204ENST00000552973 NFIAQ12857 509 aa14.28□□□□□ -0.12
NEK3-204ENST00000552973 FKBP1CQ5VVH2 108 aa14.28□□□□□ -0.12
NEK3-204ENST00000552973 ERO1BQ86YB8 467 aa14.28□□□□□ -0.12
NEK3-204ENST00000552973 ZNF341Q9BYN7 854 aa14.28□□□□□ -0.12
NEK3-204ENST00000552973 USP40Q9NVE5 1235 aa14.28□□□□□ -0.12
NEK3-204ENST00000552973 FBXO3Q9UK99 471 aa14.28□□□□□ -0.12
NEK3-204ENST00000552973 BTBD19C9JJ37 291 aa14.27□□□□□ -0.13
NEK3-204ENST00000552973 CT47B1P0C2W7 299 aaPredicted RBP14.27□□□□□ -0.13
NEK3-204ENST00000552973 DCAF15Q66K64 600 aa14.27□□□□□ -0.13
NEK3-204ENST00000552973 ZFPM1Q8IX07 1006 aa14.27□□□□□ -0.13
NEK3-204ENST00000552973 FAM151AQ8WW52 585 aa14.27□□□□□ -0.13
NEK3-204ENST00000552973 HOOK2Q96ED9 719 aa14.27□□□□□ -0.13
NEK3-204ENST00000552973 DENND2AQ9ULE3 1009 aa14.27□□□□□ -0.13
NEK3-204ENST00000552973 ECM29Q5VYK3 1845 aa14.27□□□□□ -0.13
NEK3-204ENST00000552973 CETPP11597 493 aa14.26□□□□□ -0.13
NEK3-204ENST00000552973 SNAPC2Q13487 334 aa14.26□□□□□ -0.13
NEK3-204ENST00000552973 CCDC102BQ68D86 513 aa14.26□□□□□ -0.13
NEK3-204ENST00000552973 COPRSQ9NQ92 184 aa14.26□□□□□ -0.13
NEK3-204ENST00000552973 FAM198AQ9UFP1 575 aa14.26□□□□□ -0.13
NEK3-204ENST00000552973 HDAC5Q9UQL6 1122 aa14.26□□□□□ -0.13
NEK3-204ENST00000552973 TNNQ9UQP3 1299 aa14.26□□□□□ -0.13
NEK3-204ENST00000552973 SRGAP3O43295 1099 aa14.25□□□□□ -0.13
NEK3-204ENST00000552973 MYCP01106 439 aaPredicted RBP14.25□□□□□ -0.13
NEK3-204ENST00000552973 PPIL2Q13356 520 aa14.25□□□□□ -0.13
NEK3-204ENST00000552973 PRPF38BQ5VTL8 546 aaKnown RBP14.25□□□□□ -0.13
NEK3-204ENST00000552973 INTS3Q68E01 1043 aaKnown RBP14.25□□□□□ -0.13
NEK3-204ENST00000552973 GOLGA6L2Q8N9W4 650 aaPredicted RBP14.25□□□□□ -0.13
NEK3-204ENST00000552973 ARHGAP39Q9C0H5 1083 aa14.25□□□□□ -0.13
NEK3-204ENST00000552973 ABCF2Q9UG63 623 aa14.25□□□□□ -0.13
NEK3-204ENST00000552973 PTCH2Q9Y6C5 1203 aa14.25□□□□□ -0.13
NEK3-204ENST00000552973 CCER2I3L3R5 266 aa14.24□□□□□ -0.13
NEK3-204ENST00000552973 TLR2O60603 784 aa14.24□□□□□ -0.13
NEK3-204ENST00000552973 WDHD1O75717 1129 aaPredicted RBP14.24□□□□□ -0.13
NEK3-204ENST00000552973 SLURP2P0DP57 97 aa14.24□□□□□ -0.13
NEK3-204ENST00000552973 EN2P19622 333 aaPredicted RBP14.24□□□□□ -0.13
NEK3-204ENST00000552973 PPATQ06203 517 aa14.24□□□□□ -0.13
NEK3-204ENST00000552973 TFCP2Q12800 502 aa14.24□□□□□ -0.13
NEK3-204ENST00000552973 FRAT1Q92837 279 aaPredicted RBP14.24□□□□□ -0.13
NEK3-204ENST00000552973 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP14.24□□□□□ -0.13
NEK3-204ENST00000552973 SALL1Q9NSC2 1324 aa14.23□□□□□ -0.13
NEK3-204ENST00000552973 A0A1B0GUL7 405 aa14.23□□□□□ -0.13
NEK3-204ENST00000552973 SEMA3EO15041 775 aa14.23□□□□□ -0.13
NEK3-204ENST00000552973 BCAR3O75815 825 aa14.23□□□□□ -0.13
NEK3-204ENST00000552973 GNAI3P08754 354 aa14.23□□□□□ -0.13
NEK3-204ENST00000552973 RGS3P49796 1198 aa14.23□□□□□ -0.13
NEK3-204ENST00000552973 RASGRF1Q13972 1273 aa14.23□□□□□ -0.13
NEK3-204ENST00000552973 ARHGEF6Q15052 776 aa14.23□□□□□ -0.13
NEK3-204ENST00000552973 ARHGAP45Q92619 1136 aa14.23□□□□□ -0.13
NEK3-204ENST00000552973 CLUAP1Q96AJ1 413 aa14.23□□□□□ -0.13
NEK3-204ENST00000552973 ARMC5Q96C12 935 aa14.23□□□□□ -0.13
NEK3-204ENST00000552973 XAGE2Q96GT9 111 aa14.23□□□□□ -0.13
NEK3-204ENST00000552973 NEUROD6Q96NK8 337 aa14.23□□□□□ -0.13
NEK3-204ENST00000552973 CPA4Q9UI42 421 aa14.23□□□□□ -0.13
NEK3-204ENST00000552973 ZNF112Q9UJU3 913 aa14.23□□□□□ -0.13
NEK3-204ENST00000552973 ARAP2Q8WZ64 1704 aa14.23□□□□□ -0.13
NEK3-204ENST00000552973 RPAP1Q9BWH6 1393 aaPredicted RBP14.22□□□□□ -0.13
NEK3-204ENST00000552973 OTOFQ9HC10 1997 aa14.22□□□□□ -0.13
NEK3-204ENST00000552973 DZIP1Q86YF9 867 aaKnown RBP14.22□□□□□ -0.13
NEK3-204ENST00000552973 ZSCAN29Q8IWY8 852 aaPredicted RBP14.22□□□□□ -0.13
NEK3-204ENST00000552973 PDHXO00330 501 aa14.21□□□□□ -0.13
NEK3-204ENST00000552973 TRIM27P14373 513 aa14.21□□□□□ -0.13
NEK3-204ENST00000552973 LACTBP83111 547 aaPredicted RBP14.21□□□□□ -0.13
NEK3-204ENST00000552973 PICALMQ13492 652 aa14.21□□□□□ -0.13
NEK3-204ENST00000552973 KIF22Q14807 665 aa14.21□□□□□ -0.13
NEK3-204ENST00000552973 SLC9C1Q4G0N8 1177 aa14.21□□□□□ -0.13
NEK3-204ENST00000552973 SH3BP5LQ7L8J4 393 aa14.21□□□□□ -0.13
NEK3-204ENST00000552973 ZGPATQ8N5A5 531 aaKnown RBP14.21□□□□□ -0.13
NEK3-204ENST00000552973 SH3TC2Q8TF17 1288 aa14.21□□□□□ -0.13
NEK3-204ENST00000552973 TMEM106CQ9BVX2 250 aa14.21□□□□□ -0.13
NEK3-204ENST00000552973 AKAP2Q9Y2D5 859 aa14.21□□□□□ -0.13
NEK3-204ENST00000552973 DDTLA6NHG4 134 aaPredicted RBP14.2□□□□□ -0.14
NEK3-204ENST00000552973 BTDP43251 543 aa14.2□□□□□ -0.14
NEK3-204ENST00000552973 SLC4A8Q2Y0W8 1093 aa14.2□□□□□ -0.14
NEK3-204ENST00000552973 C17orf99Q6UX52 265 aa14.2□□□□□ -0.14
NEK3-204ENST00000552973 TBC1D9Q6ZT07 1266 aa14.2□□□□□ -0.14
NEK3-204ENST00000552973 ANKRD23Q86SG2 305 aa14.2□□□□□ -0.14
NEK3-204ENST00000552973 NBPF11Q86T75 865 aa14.2□□□□□ -0.14
NEK3-204ENST00000552973 ZNF333Q96JL9 665 aa14.2□□□□□ -0.14
NEK3-204ENST00000552973 ZCCHC17Q9NP64 241 aaKnown RBP14.2□□□□□ -0.14
NEK3-204ENST00000552973 DDX4Q9NQI0 724 aaKnown RBP14.2□□□□□ -0.14
NEK3-204ENST00000552973 KCNH4Q9UQ05 1017 aa14.2□□□□□ -0.14
NEK3-204ENST00000552973 GAKO14976 1311 aa14.19□□□□□ -0.14
NEK3-204ENST00000552973 PNMA6EA0A0J9YXQ4 647 aa14.19□□□□□ -0.14
NEK3-204ENST00000552973 PHF20L1A8MW92 1017 aa14.19□□□□□ -0.14
NEK3-204ENST00000552973 IPO8O15397 1037 aaKnown RBP14.19□□□□□ -0.14
NEK3-204ENST00000552973 ENTPD3O75355 529 aa14.19□□□□□ -0.14
NEK3-204ENST00000552973 GNAI2P04899 355 aa14.19□□□□□ -0.14
NEK3-204ENST00000552973 CTGFP29279 349 aa14.19□□□□□ -0.14
NEK3-204ENST00000552973 MTX1Q13505 466 aa14.19□□□□□ -0.14
NEK3-204ENST00000552973 MOGSQ13724 837 aa14.19□□□□□ -0.14
NEK3-204ENST00000552973 MVPQ14764 893 aaKnown RBP14.19□□□□□ -0.14
NEK3-204ENST00000552973 NOL9Q5SY16 702 aaKnown RBP14.19□□□□□ -0.14
NEK3-204ENST00000552973 GORABQ5T7V8 394 aa14.19□□□□□ -0.14
NEK3-204ENST00000552973 SPTY2D1Q68D10 685 aaPredicted RBP14.19□□□□□ -0.14
NEK3-204ENST00000552973 PI16Q6UXB8 463 aa14.19□□□□□ -0.14
NEK3-204ENST00000552973 ATF7IPQ6VMQ6 1270 aa14.19□□□□□ -0.14
NEK3-204ENST00000552973 ERICH6Q7L0X2 663 aa14.19□□□□□ -0.14
NEK3-204ENST00000552973 IDI2Q9BXS1 227 aa14.19□□□□□ -0.14
NEK3-204ENST00000552973 HMG20BQ9P0W2 317 aa14.19□□□□□ -0.14
NEK3-204ENST00000552973 ZHX2Q9Y6X8 837 aa14.19□□□□□ -0.14
Retrieved 100 of 20,778 RNA–protein pairs in 47.6 ms