RNA–Protein interactions for RNA: ENST00000552720.5

LIMA1-213, Transcript of LIM domain and actin binding 1, humanhuman

TSL 1 (best)

Gene LIMA1, Length 2,457 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-213ENST00000552720 HSPA2P54652 639 aa8.71□□□□□ -1.02
LIMA1-213ENST00000552720 SYNE3Q6ZMZ3 975 aa8.71□□□□□ -1.02
LIMA1-213ENST00000552720 TMC6Q7Z403 805 aa8.71□□□□□ -1.02
LIMA1-213ENST00000552720 MICU3Q86XE3 530 aa8.71□□□□□ -1.02
LIMA1-213ENST00000552720 CCAR2Q8N163 923 aaKnown RBP8.71□□□□□ -1.02
LIMA1-213ENST00000552720 ZBTB38Q8NAP3 1195 aaPredicted RBP8.71□□□□□ -1.02
LIMA1-213ENST00000552720 TTLL11Q8NHH1 800 aa8.71□□□□□ -1.02
LIMA1-213ENST00000552720 KCNG4Q8TDN1 519 aa8.71□□□□□ -1.02
LIMA1-213ENST00000552720 TMOD3Q9NYL9 352 aa8.71□□□□□ -1.02
LIMA1-213ENST00000552720 WWC3Q9ULE0 1092 aa8.71□□□□□ -1.02
LIMA1-213ENST00000552720 MYH6P13533 1939 aa8.7□□□□□ -1.02
LIMA1-213ENST00000552720 PLEKHG2Q9H7P9 1386 aa8.7□□□□□ -1.02
LIMA1-213ENST00000552720 IGSF3O75054 1194 aa8.7□□□□□ -1.02
LIMA1-213ENST00000552720 SLC3A2P08195 630 aaKnown RBP8.7□□□□□ -1.02
LIMA1-213ENST00000552720 LMOD1P29536 600 aaPredicted RBP8.7□□□□□ -1.02
LIMA1-213ENST00000552720 NCAPHQ15003 741 aa8.7□□□□□ -1.02
LIMA1-213ENST00000552720 PTPN14Q15678 1187 aa8.7□□□□□ -1.02
LIMA1-213ENST00000552720 ARMCX5Q6P1M9 558 aa8.7□□□□□ -1.02
LIMA1-213ENST00000552720 KIF6Q6ZMV9 814 aa8.7□□□□□ -1.02
LIMA1-213ENST00000552720 VPS37DQ86XT2 251 aa8.7□□□□□ -1.02
LIMA1-213ENST00000552720 STK11IPQ8N1F8 1099 aa8.7□□□□□ -1.02
LIMA1-213ENST00000552720 PIGBQ92521 554 aa8.7□□□□□ -1.02
LIMA1-213ENST00000552720 CLIC6Q96NY7 704 aa8.7□□□□□ -1.02
LIMA1-213ENST00000552720 ALG1Q9BT22 464 aa8.7□□□□□ -1.02
LIMA1-213ENST00000552720 NAT10Q9H0A0 1025 aaKnown RBP8.7□□□□□ -1.02
LIMA1-213ENST00000552720 CNNM1Q9NRU3 951 aa8.7□□□□□ -1.02
LIMA1-213ENST00000552720 ZNF215Q9UL58 517 aaPredicted RBP8.7□□□□□ -1.02
LIMA1-213ENST00000552720 PAXBP1Q9Y5B6 917 aa8.7□□□□□ -1.02
LIMA1-213ENST00000552720 ZNF532Q9HCE3 1301 aa8.7□□□□□ -1.02
LIMA1-213ENST00000552720 DHX16O60231 1041 aaKnown RBP8.7□□□□□ -1.02
LIMA1-213ENST00000552720 METAP2P50579 478 aaKnown RBP eCLIP8.7□□□□□ -1.02
LIMA1-213ENST00000552720 KRT40Q6A162 431 aa8.7□□□□□ -1.02
LIMA1-213ENST00000552720 TICAM2Q86XR7 235 aa8.7□□□□□ -1.02
LIMA1-213ENST00000552720 HSD3B7Q9H2F3 369 aa8.7□□□□□ -1.02
LIMA1-213ENST00000552720 ZHX1Q9UKY1 873 aaPredicted RBP8.7□□□□□ -1.02
LIMA1-213ENST00000552720 ANGEL1Q9UNK9 670 aaKnown RBP8.7□□□□□ -1.02
LIMA1-213ENST00000552720 TACC3Q9Y6A5 838 aa8.7□□□□□ -1.02
LIMA1-213ENST00000552720 SH2B2O14492 632 aaPredicted RBP8.69□□□□□ -1.02
LIMA1-213ENST00000552720 RANBP6O60518 1105 aaKnown RBP8.69□□□□□ -1.02
LIMA1-213ENST00000552720 NLRP12P59046 1061 aa8.69□□□□□ -1.02
LIMA1-213ENST00000552720 PNOCQ13519 176 aa8.69□□□□□ -1.02
LIMA1-213ENST00000552720 ZRSR1Q15695 479 aaKnown RBP8.69□□□□□ -1.02
LIMA1-213ENST00000552720 LRRFIP1Q32MZ4 808 aaKnown RBP8.69□□□□□ -1.02
LIMA1-213ENST00000552720 SPECC1Q5M775 1068 aa8.69□□□□□ -1.02
LIMA1-213ENST00000552720 E4F1Q66K89 784 aaPredicted RBP8.69□□□□□ -1.02
LIMA1-213ENST00000552720 APOA5Q6Q788 366 aa8.69□□□□□ -1.02
LIMA1-213ENST00000552720 SHC4Q6S5L8 630 aa8.69□□□□□ -1.02
LIMA1-213ENST00000552720 BRAPQ7Z569 592 aa8.69□□□□□ -1.02
LIMA1-213ENST00000552720 NLRP10Q86W26 655 aa8.69□□□□□ -1.02
LIMA1-213ENST00000552720 VGLL2Q8N8G2 317 aa8.69□□□□□ -1.02
LIMA1-213ENST00000552720 DPF2Q92785 391 aa8.69□□□□□ -1.02
LIMA1-213ENST00000552720 SLC4A9Q96Q91 983 aa8.69□□□□□ -1.02
LIMA1-213ENST00000552720 ZMYM6O95789 1325 aa8.69□□□□□ -1.02
LIMA1-213ENST00000552720 NEMFO60524 1076 aa8.69□□□□□ -1.02
LIMA1-213ENST00000552720 CMA1P23946 247 aa8.69□□□□□ -1.02
LIMA1-213ENST00000552720 CTDSPL2Q05D32 466 aa8.69□□□□□ -1.02
LIMA1-213ENST00000552720 GOLGA8FQ08AF8 430 aa8.69□□□□□ -1.02
LIMA1-213ENST00000552720 GOLGA8DPQ0D2H9 430 aa8.69□□□□□ -1.02
LIMA1-213ENST00000552720 TRDNQ13061 729 aa8.69□□□□□ -1.02
LIMA1-213ENST00000552720 TRIM28Q13263 835 aaKnown RBP8.69□□□□□ -1.02
LIMA1-213ENST00000552720 SLC39A14Q15043 492 aa8.69□□□□□ -1.02
LIMA1-213ENST00000552720 CCDC102BQ68D86 513 aa8.69□□□□□ -1.02
LIMA1-213ENST00000552720 GIGYF2Q6Y7W6 1299 aaKnown RBP8.69□□□□□ -1.02
LIMA1-213ENST00000552720 LRRN4CLQ8ND94 238 aa8.69□□□□□ -1.02
LIMA1-213ENST00000552720 CARD10Q9BWT7 1032 aa8.69□□□□□ -1.02
LIMA1-213ENST00000552720 PLA2G12BQ9BX93 195 aa8.69□□□□□ -1.02
LIMA1-213ENST00000552720 DDX24Q9GZR7 859 aaKnown RBP eCLIP8.69□□□□□ -1.02
LIMA1-213ENST00000552720 OSBPL5Q9H0X9 879 aaPredicted RBP8.69□□□□□ -1.02
LIMA1-213ENST00000552720 MAP3K15Q6ZN16 1313 aa8.68□□□□□ -1.02
LIMA1-213ENST00000552720 DOCK2Q92608 1830 aa8.68□□□□□ -1.02
LIMA1-213ENST00000552720 IRS4O14654 1257 aaPredicted RBP8.68□□□□□ -1.02
LIMA1-213ENST00000552720 NPHP1O15259 732 aa8.68□□□□□ -1.02
LIMA1-213ENST00000552720 FOXN1O15353 648 aa8.68□□□□□ -1.02
LIMA1-213ENST00000552720 PDE6AP16499 860 aa8.68□□□□□ -1.02
LIMA1-213ENST00000552720 SYKP43405 635 aa8.68□□□□□ -1.02
LIMA1-213ENST00000552720 CTSWP56202 376 aa8.68□□□□□ -1.02
LIMA1-213ENST00000552720 EVA1CP58658 441 aa8.68□□□□□ -1.02
LIMA1-213ENST00000552720 PTPAQ15257 358 aa8.68□□□□□ -1.02
LIMA1-213ENST00000552720 NTRK3Q16288 839 aa8.68□□□□□ -1.02
LIMA1-213ENST00000552720 HSP90AA4PQ58FG1 418 aa8.68□□□□□ -1.02
LIMA1-213ENST00000552720 CMTR1Q8N1G2 835 aaKnown RBP8.68□□□□□ -1.02
LIMA1-213ENST00000552720 ZKSCAN3Q9BRR0 538 aa8.68□□□□□ -1.02
LIMA1-213ENST00000552720 FAM217BQ9NTX9 383 aaPredicted RBP8.68□□□□□ -1.02
LIMA1-213ENST00000552720 ZNF219Q9P2Y4 722 aaPredicted RBP8.68□□□□□ -1.02
LIMA1-213ENST00000552720 TBC1D2BQ9UPU7 963 aa8.68□□□□□ -1.02
LIMA1-213ENST00000552720 SLIT2O94813 1529 aa8.68□□□□□ -1.02
LIMA1-213ENST00000552720 MYH2Q9UKX2 1941 aa8.68□□□□□ -1.02
LIMA1-213ENST00000552720 TCRBV5S4A2TA0A5A2 114 aa8.68□□□□□ -1.02
LIMA1-213ENST00000552720 ANKRD18BA2A2Z9 1011 aa8.68□□□□□ -1.02
LIMA1-213ENST00000552720 PDE8BO95263 885 aa8.68□□□□□ -1.02
LIMA1-213ENST00000552720 GUCY1A2P33402 732 aa8.68□□□□□ -1.02
LIMA1-213ENST00000552720 FANCCQ00597 558 aa8.68□□□□□ -1.02
LIMA1-213ENST00000552720 CCDC82Q8N4S0 544 aa8.68□□□□□ -1.02
LIMA1-213ENST00000552720 IGDCC4Q8TDY8 1250 aa8.68□□□□□ -1.02
LIMA1-213ENST00000552720 MAP3K14Q99558 947 aa8.68□□□□□ -1.02
LIMA1-213ENST00000552720 BPIFA3Q9BQP9 254 aa8.68□□□□□ -1.02
LIMA1-213ENST00000552720 EPB41L4AQ9HCS5 686 aaPredicted RBP8.68□□□□□ -1.02
LIMA1-213ENST00000552720 TRMT112Q9UI30 125 aaKnown RBP8.68□□□□□ -1.02
LIMA1-213ENST00000552720 ZBTB1Q9Y2K1 713 aa8.68□□□□□ -1.02
LIMA1-213ENST00000552720 UBN2Q6ZU65 1347 aa8.67□□□□□ -1.02
Retrieved 100 of 20,778 RNA–protein pairs in 72.7 ms