RNA–Protein interactions for RNA: ENST00000551691.5

LIMA1-208, Transcript of LIM domain and actin binding 1, humanhuman

TSL 3

Gene LIMA1, Length 583 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-208ENST00000551691 LOC102724428A0A0B4J2F2 783 aa5.59□□□□□ -1.51
LIMA1-208ENST00000551691 DLL1O00548 723 aa5.59□□□□□ -1.51
LIMA1-208ENST00000551691 FOXO3O43524 673 aa5.59□□□□□ -1.51
LIMA1-208ENST00000551691 NDUFB5O43674 189 aa5.59□□□□□ -1.51
LIMA1-208ENST00000551691 NRLP54845 237 aa5.59□□□□□ -1.51
LIMA1-208ENST00000551691 SIK1P57059 783 aa5.59□□□□□ -1.51
LIMA1-208ENST00000551691 FKBP4Q02790 459 aaKnown RBP eCLIP5.59□□□□□ -1.51
LIMA1-208ENST00000551691 PCSK7Q16549 785 aa5.59□□□□□ -1.51
LIMA1-208ENST00000551691 TSNAXIP1Q2TAA8 658 aa5.59□□□□□ -1.51
LIMA1-208ENST00000551691 TXNDC11Q6PKC3 985 aa5.59□□□□□ -1.51
LIMA1-208ENST00000551691 IGF2-ASQ6U949 168 aa5.59□□□□□ -1.51
LIMA1-208ENST00000551691 CAPN12Q6ZSI9 719 aa5.59□□□□□ -1.51
LIMA1-208ENST00000551691 KRTAP1-3Q8IUG1 177 aa5.59□□□□□ -1.51
LIMA1-208ENST00000551691 IL22RA1Q8N6P7 574 aa5.59□□□□□ -1.51
LIMA1-208ENST00000551691 MYO19Q96H55 970 aa5.59□□□□□ -1.51
LIMA1-208ENST00000551691 ASB16Q96NS5 453 aa5.59□□□□□ -1.51
LIMA1-208ENST00000551691 MRS2Q9HD23 443 aa5.59□□□□□ -1.51
LIMA1-208ENST00000551691 CFDP1Q9UEE9 299 aaPredicted RBP5.59□□□□□ -1.51
LIMA1-208ENST00000551691 KCNMB2Q9Y691 235 aa5.59□□□□□ -1.51
LIMA1-208ENST00000551691 CLIP1P30622 1438 aa5.58□□□□□ -1.52
LIMA1-208ENST00000551691 GHRHP01286 108 aa5.58□□□□□ -1.52
LIMA1-208ENST00000551691 PSAPP07602 524 aa5.58□□□□□ -1.52
LIMA1-208ENST00000551691 SSTR4P31391 388 aa5.58□□□□□ -1.52
LIMA1-208ENST00000551691 FGD1P98174 961 aa5.58□□□□□ -1.52
LIMA1-208ENST00000551691 TRIP4Q15650 581 aaPredicted RBP5.58□□□□□ -1.52
LIMA1-208ENST00000551691 OCLNQ16625 522 aa5.58□□□□□ -1.52
LIMA1-208ENST00000551691 PRR23CQ6ZRP0 262 aa5.58□□□□□ -1.52
LIMA1-208ENST00000551691 ETFBKMTQ8IXQ9 262 aa5.58□□□□□ -1.52
LIMA1-208ENST00000551691 C19orf44Q9H6X5 657 aa5.58□□□□□ -1.52
LIMA1-208ENST00000551691 AKTIPQ9H8T0 292 aa5.58□□□□□ -1.52
LIMA1-208ENST00000551691 PPP1R1BQ9UD71 204 aaPredicted RBP5.58□□□□□ -1.52
LIMA1-208ENST00000551691 PREX2Q70Z35 1606 aa5.58□□□□□ -1.52
LIMA1-208ENST00000551691 MAST1Q9Y2H9 1570 aa5.58□□□□□ -1.52
LIMA1-208ENST00000551691 GPATCH8Q9UKJ3 1502 aaKnown RBP5.58□□□□□ -1.52
LIMA1-208ENST00000551691 ARHGAP23Q9P227 1491 aa5.58□□□□□ -1.52
LIMA1-208ENST00000551691 ATRNO75882 1429 aa5.57□□□□□ -1.52
LIMA1-208ENST00000551691 CDC42BPAQ5VT25 1732 aa5.57□□□□□ -1.52
LIMA1-208ENST00000551691 UBR1Q8IWV7 1749 aa5.57□□□□□ -1.52
LIMA1-208ENST00000551691 PNPLA6Q8IY17 1366 aa5.57□□□□□ -1.52
LIMA1-208ENST00000551691 TMEM2Q9UHN6 1383 aa5.57□□□□□ -1.52
LIMA1-208ENST00000551691 ADGBQ8N7X0 1667 aa5.57□□□□□ -1.52
LIMA1-208ENST00000551691 FAM13AO94988 1023 aa5.57□□□□□ -1.52
LIMA1-208ENST00000551691 HSP90B1P14625 803 aaKnown RBP5.57□□□□□ -1.52
LIMA1-208ENST00000551691 ZC3H6P61129 1189 aaKnown RBP5.57□□□□□ -1.52
LIMA1-208ENST00000551691 IDI1Q13907 227 aa5.57□□□□□ -1.52
LIMA1-208ENST00000551691 LACRTQ9GZZ8 138 aa5.57□□□□□ -1.52
LIMA1-208ENST00000551691 SEPT3Q9UH03 358 aa5.57□□□□□ -1.52
LIMA1-208ENST00000551691 BRPF3Q9ULD4 1205 aa5.57□□□□□ -1.52
LIMA1-208ENST00000551691 TIAM1Q13009 1591 aa5.57□□□□□ -1.52
LIMA1-208ENST00000551691 LRRIQ1Q96JM4 1722 aa5.57□□□□□ -1.52
LIMA1-208ENST00000551691 TET3O43151 1660 aa5.56□□□□□ -1.52
LIMA1-208ENST00000551691 AHDC1Q5TGY3 1603 aaPredicted RBP5.56□□□□□ -1.52
LIMA1-208ENST00000551691 INO80Q9ULG1 1556 aaPredicted RBP5.56□□□□□ -1.52
LIMA1-208ENST00000551691 F8W735 103 aaPredicted RBP5.56□□□□□ -1.52
LIMA1-208ENST00000551691 GLB1P16278 677 aa5.56□□□□□ -1.52
LIMA1-208ENST00000551691 FSTP19883 344 aa5.56□□□□□ -1.52
LIMA1-208ENST00000551691 ATP11AP98196 1134 aa5.56□□□□□ -1.52
LIMA1-208ENST00000551691 XPCQ01831 940 aaPredicted RBP5.56□□□□□ -1.52
LIMA1-208ENST00000551691 MTMR3Q13615 1198 aa5.56□□□□□ -1.52
LIMA1-208ENST00000551691 NAA30Q147X3 362 aaPredicted RBP5.56□□□□□ -1.52
LIMA1-208ENST00000551691 SETDB1Q15047 1291 aa5.56□□□□□ -1.52
LIMA1-208ENST00000551691 SF3A1Q15459 793 aaKnown RBP5.56□□□□□ -1.52
LIMA1-208ENST00000551691 EZH2Q15910 746 aaKnown RBP5.56□□□□□ -1.52
LIMA1-208ENST00000551691 COL13A1Q5TAT6 717 aaPredicted RBP5.56□□□□□ -1.52
LIMA1-208ENST00000551691 SREK1Q8WXA9 508 aaKnown RBP5.56□□□□□ -1.52
LIMA1-208ENST00000551691 TTC9Q92623 222 aa5.56□□□□□ -1.52
LIMA1-208ENST00000551691 DRC1Q96MC2 740 aa5.56□□□□□ -1.52
LIMA1-208ENST00000551691 SLIT1O75093 1534 aa5.56□□□□□ -1.52
LIMA1-208ENST00000551691 ERVK-7P63135 1459 aa5.56□□□□□ -1.52
LIMA1-208ENST00000551691 SETD5Q9C0A6 1442 aa5.56□□□□□ -1.52
LIMA1-208ENST00000551691 NWD1Q149M9 1564 aa5.55□□□□□ -1.52
LIMA1-208ENST00000551691 LINC01387J3KSC0 135 aa5.55□□□□□ -1.52
LIMA1-208ENST00000551691 WISP1O95388 367 aa5.55□□□□□ -1.52
LIMA1-208ENST00000551691 ATP2B2Q01814 1243 aa5.55□□□□□ -1.52
LIMA1-208ENST00000551691 ADAMTSL4Q6UY14 1074 aa5.55□□□□□ -1.52
LIMA1-208ENST00000551691 GALNT11Q8NCW6 608 aa5.55□□□□□ -1.52
LIMA1-208ENST00000551691 HELQQ8TDG4 1101 aa5.55□□□□□ -1.52
LIMA1-208ENST00000551691 KRTAP4-12Q9BQ66 201 aa5.55□□□□□ -1.52
LIMA1-208ENST00000551691 CARD10Q9BWT7 1032 aa5.55□□□□□ -1.52
LIMA1-208ENST00000551691 MRPL18Q9H0U6 180 aaKnown RBP5.55□□□□□ -1.52
LIMA1-208ENST00000551691 PCMTD2Q9NV79 361 aa5.55□□□□□ -1.52
LIMA1-208ENST00000551691 RNF112Q9ULX5 631 aa5.55□□□□□ -1.52
LIMA1-208ENST00000551691 KIAA1107Q9UPP5 1409 aa5.55□□□□□ -1.52
LIMA1-208ENST00000551691 NHSL1Q5SYE7 1610 aa5.55□□□□□ -1.52
LIMA1-208ENST00000551691 KDM5AP29375 1690 aaKnown RBP5.54□□□□□ -1.52
LIMA1-208ENST00000551691 EGFRP00533 1210 aa5.54□□□□□ -1.52
LIMA1-208ENST00000551691 CDK11BP21127 795 aaKnown RBP5.54□□□□□ -1.52
LIMA1-208ENST00000551691 VAMP1P23763 118 aa5.54□□□□□ -1.52
LIMA1-208ENST00000551691 ERCC5P28715 1186 aaPredicted RBP5.54□□□□□ -1.52
LIMA1-208ENST00000551691 COL19A1Q14993 1142 aa5.54□□□□□ -1.52
LIMA1-208ENST00000551691 LCE3BQ5TA77 95 aa5.54□□□□□ -1.52
LIMA1-208ENST00000551691 DZIP1LQ8IYY4 767 aaKnown RBP5.54□□□□□ -1.52
LIMA1-208ENST00000551691 RBSNQ9H1K0 784 aa5.54□□□□□ -1.52
LIMA1-208ENST00000551691 IGSF5Q9NSI5 407 aa5.54□□□□□ -1.52
LIMA1-208ENST00000551691 KCNK4Q9NYG8 393 aa5.54□□□□□ -1.52
LIMA1-208ENST00000551691 SIPA1L2Q9P2F8 1722 aaPredicted RBP5.54□□□□□ -1.52
LIMA1-208ENST00000551691 CAMTA1Q9Y6Y1 1673 aa5.53□□□□□ -1.52
LIMA1-208ENST00000551691 CYP2E1P05181 493 aaPredicted RBP5.53□□□□□ -1.52
LIMA1-208ENST00000551691 MAPK8P45983 427 aa5.53□□□□□ -1.52
LIMA1-208ENST00000551691 NOM1Q5C9Z4 860 aaKnown RBP5.53□□□□□ -1.52
Retrieved 100 of 20,778 RNA–protein pairs in 20.2 ms