RNA–Protein interactions for RNA: ENST00000550692.1

BRF1-218, Transcript of BRF1, RNA polymerase III transcription initiation factor subunit, human

TSL 4

Gene BRF1, Length 600 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
BRF1-218	ENST00000550692	RHPN1	Q8TCX5	695 aa		13.81	□□□□□ -0.2
BRF1-218	ENST00000550692	IL1RAPL2	Q9NP60	686 aa		13.81	□□□□□ -0.2
BRF1-218	ENST00000550692	SNRK	Q9NRH2	765 aa		13.81	□□□□□ -0.2
BRF1-218	ENST00000550692	TMOD2	Q9NZR1	351 aa		13.81	□□□□□ -0.2
BRF1-218	ENST00000550692	MYH2	Q9UKX2	1941 aa		13.8	□□□□□ -0.2
BRF1-218	ENST00000550692	APBB1	O00213	710 aa		13.8	□□□□□ -0.2
BRF1-218	ENST00000550692	PPP1R12B	O60237	982 aa	Predicted RBP	13.8	□□□□□ -0.2
BRF1-218	ENST00000550692	USP2	O75604	605 aa	Predicted RBP	13.8	□□□□□ -0.2
BRF1-218	ENST00000550692	MAP3K11	Q16584	847 aa		13.8	□□□□□ -0.2
BRF1-218	ENST00000550692	HSP90AB4P	Q58FF6	505 aa		13.8	□□□□□ -0.2
BRF1-218	ENST00000550692	SPTY2D1	Q68D10	685 aa	Predicted RBP	13.8	□□□□□ -0.2
BRF1-218	ENST00000550692	ERICH6	Q7L0X2	663 aa		13.8	□□□□□ -0.2
BRF1-218	ENST00000550692	ERC1	Q8IUD2	1116 aa		13.8	□□□□□ -0.2
BRF1-218	ENST00000550692	CRBN	Q96SW2	442 aa		13.8	□□□□□ -0.2
BRF1-218	ENST00000550692	BEGAIN	Q9BUH8	593 aa		13.8	□□□□□ -0.2
BRF1-218	ENST00000550692	CTCF	P49711	727 aa	Predicted RBP	13.79	□□□□□ -0.2
BRF1-218	ENST00000550692	LBX1	P52954	281 aa		13.79	□□□□□ -0.2
BRF1-218	ENST00000550692	MECOM	Q03112	1051 aa		13.79	□□□□□ -0.2
BRF1-218	ENST00000550692	NFIA	Q12857	509 aa		13.79	□□□□□ -0.2
BRF1-218	ENST00000550692	FKBP1C	Q5VVH2	108 aa		13.79	□□□□□ -0.2
BRF1-218	ENST00000550692	FAM83A	Q86UY5	434 aa		13.79	□□□□□ -0.2
BRF1-218	ENST00000550692	AACS	Q86V21	672 aa		13.79	□□□□□ -0.2
BRF1-218	ENST00000550692	ZNF384	Q8TF68	577 aa		13.79	□□□□□ -0.2
BRF1-218	ENST00000550692	FAM163A	Q96GL9	167 aa	Predicted RBP	13.79	□□□□□ -0.2
BRF1-218	ENST00000550692	USP40	Q9NVE5	1235 aa		13.79	□□□□□ -0.2
BRF1-218	ENST00000550692	ZBTB4	Q9P1Z0	1013 aa	Predicted RBP	13.79	□□□□□ -0.2
BRF1-218	ENST00000550692	TSKS	Q9UJT2	592 aa		13.79	□□□□□ -0.2
BRF1-218	ENST00000550692	AKAP11	Q9UKA4	1901 aa		13.79	□□□□□ -0.2
BRF1-218	ENST00000550692	GAK	O14976	1311 aa		13.79	□□□□□ -0.2
BRF1-218	ENST00000550692	HSPA8	P11142	646 aa	Known RBP	13.78	□□□□□ -0.2
BRF1-218	ENST00000550692	IREB2	P48200	963 aa	Known RBP	13.78	□□□□□ -0.2
BRF1-218	ENST00000550692	IRX6	P78412	446 aa	Predicted RBP	13.78	□□□□□ -0.2
BRF1-218	ENST00000550692	TCP10	Q12799	353 aa		13.78	□□□□□ -0.2
BRF1-218	ENST00000550692	MKRN3	Q13064	507 aa	Known RBP	13.78	□□□□□ -0.2
BRF1-218	ENST00000550692	NSUN4	Q96CB9	384 aa	Known RBP	13.78	□□□□□ -0.2
BRF1-218	ENST00000550692	KIF1BP	Q96EK5	621 aa		13.78	□□□□□ -0.2
BRF1-218	ENST00000550692	CLMN	Q96JQ2	1002 aa		13.78	□□□□□ -0.2
BRF1-218	ENST00000550692	ZNF512B	Q96KM6	892 aa	Predicted RBP	13.78	□□□□□ -0.2
BRF1-218	ENST00000550692	CSRNP1	Q96S65	589 aa		13.78	□□□□□ -0.2
BRF1-218	ENST00000550692	BCL11A	Q9H165	835 aa		13.78	□□□□□ -0.2
BRF1-218	ENST00000550692	PRDM10	Q9NQV6	1147 aa		13.78	□□□□□ -0.2
BRF1-218	ENST00000550692	RAI14	Q9P0K7	980 aa		13.78	□□□□□ -0.2
BRF1-218	ENST00000550692	MROH7-TTC4	A0A0A0MT08	1334 aa		13.77	□□□□□ -0.21
BRF1-218	ENST00000550692	CYP2E1	P05181	493 aa	Predicted RBP	13.77	□□□□□ -0.21
BRF1-218	ENST00000550692	ZAP70	P43403	619 aa		13.77	□□□□□ -0.21
BRF1-218	ENST00000550692	ERICH6B	Q5W0A0	696 aa		13.77	□□□□□ -0.21
BRF1-218	ENST00000550692	SLF2	Q8IX21	1173 aa		13.77	□□□□□ -0.21
BRF1-218	ENST00000550692	EXOC6	Q8TAG9	804 aa		13.77	□□□□□ -0.21
BRF1-218	ENST00000550692	SLC10A4	Q96EP9	437 aa		13.77	□□□□□ -0.21
BRF1-218	ENST00000550692	LRP2BP	Q9P2M1	347 aa		13.77	□□□□□ -0.21
BRF1-218	ENST00000550692	FAM198A	Q9UFP1	575 aa		13.77	□□□□□ -0.21
BRF1-218	ENST00000550692	GPR75-ASB3	A0A0A6YYF3	556 aa		13.76	□□□□□ -0.21
BRF1-218	ENST00000550692	RAB11FIP3	O75154	756 aa		13.76	□□□□□ -0.21
BRF1-218	ENST00000550692	BTD	P43251	543 aa		13.76	□□□□□ -0.21
BRF1-218	ENST00000550692	ZFPM1	Q8IX07	1006 aa		13.76	□□□□□ -0.21
BRF1-218	ENST00000550692	CLASRP	Q8N2M8	674 aa	Known RBP	13.76	□□□□□ -0.21
BRF1-218	ENST00000550692	FAM151A	Q8WW52	585 aa		13.76	□□□□□ -0.21
BRF1-218	ENST00000550692	NDUFB9	Q9Y6M9	179 aa		13.76	□□□□□ -0.21
BRF1-218	ENST00000550692	MYO5A	Q9Y4I1	1855 aa	Known RBP	13.76	□□□□□ -0.21
BRF1-218	ENST00000550692	LDHC	P07864	332 aa		13.75	□□□□□ -0.21
BRF1-218	ENST00000550692	RGS3	P49796	1198 aa		13.75	□□□□□ -0.21
BRF1-218	ENST00000550692	SPRYD7	Q5W111	196 aa		13.75	□□□□□ -0.21
BRF1-218	ENST00000550692	ANKRD13A	Q8IZ07	590 aa		13.75	□□□□□ -0.21
BRF1-218	ENST00000550692	IDI2	Q9BXS1	227 aa		13.75	□□□□□ -0.21
BRF1-218	ENST00000550692	PIH1D3	Q9NQM4	214 aa	Known RBP	13.75	□□□□□ -0.21
BRF1-218	ENST00000550692	PCDHB15	Q9Y5E8	787 aa		13.75	□□□□□ -0.21
BRF1-218	ENST00000550692	RPAP1	Q9BWH6	1393 aa	Predicted RBP	13.74	□□□□□ -0.21
BRF1-218	ENST00000550692	UNCX	A6NJT0	531 aa		13.74	□□□□□ -0.21
BRF1-218	ENST00000550692	CA12	O43570	354 aa		13.74	□□□□□ -0.21
BRF1-218	ENST00000550692	WDHD1	O75717	1129 aa	Predicted RBP	13.74	□□□□□ -0.21
BRF1-218	ENST00000550692	RHBDL3	P58872	404 aa		13.74	□□□□□ -0.21
BRF1-218	ENST00000550692	GSTO1	P78417	241 aa		13.74	□□□□□ -0.21
BRF1-218	ENST00000550692	PPP1R3F	Q6ZSY5	799 aa	Predicted RBP	13.74	□□□□□ -0.21
BRF1-218	ENST00000550692	MIGA2	Q7L4E1	593 aa		13.74	□□□□□ -0.21
BRF1-218	ENST00000550692	DDX55	Q8NHQ9	600 aa	Known RBP eCLIP	13.74	□□□□□ -0.21
BRF1-218	ENST00000550692	WNK4	Q96J92	1243 aa		13.74	□□□□□ -0.21
BRF1-218	ENST00000550692	ANTXR1	Q9H6X2	564 aa		13.74	□□□□□ -0.21
BRF1-218	ENST00000550692	DDX4	Q9NQI0	724 aa	Known RBP	13.74	□□□□□ -0.21
BRF1-218	ENST00000550692	RNF186	Q9NXI6	227 aa		13.74	□□□□□ -0.21
BRF1-218	ENST00000550692	AK9	Q5TCS8	1911 aa		13.74	□□□□□ -0.21
BRF1-218	ENST00000550692	RFX7	Q2KHR2	1363 aa		13.73	□□□□□ -0.21
BRF1-218	ENST00000550692	OTOF	Q9HC10	1997 aa		13.73	□□□□□ -0.21
BRF1-218	ENST00000550692	ENTPD3	O75355	529 aa		13.73	□□□□□ -0.21
BRF1-218	ENST00000550692	TRPA1	O75762	1119 aa		13.73	□□□□□ -0.21
BRF1-218	ENST00000550692	IFIT2	P09913	472 aa	Known RBP	13.73	□□□□□ -0.21
BRF1-218	ENST00000550692	GJA5	P36382	358 aa		13.73	□□□□□ -0.21
BRF1-218	ENST00000550692	MAP3K9	P80192	1104 aa		13.73	□□□□□ -0.21
BRF1-218	ENST00000550692	NAA16	Q6N069	864 aa	Predicted RBP	13.73	□□□□□ -0.21
BRF1-218	ENST00000550692	REM2	Q8IYK8	340 aa	Predicted RBP	13.73	□□□□□ -0.21
BRF1-218	ENST00000550692	DCTPP1	Q9H773	170 aa		13.73	□□□□□ -0.21
BRF1-218	ENST00000550692	ELP3	Q9H9T3	547 aa		13.73	□□□□□ -0.21
BRF1-218	ENST00000550692	SMARCA5	O60264	1052 aa	Predicted RBP	13.72	□□□□□ -0.21
BRF1-218	ENST00000550692	TM4SF4	P48230	202 aa		13.72	□□□□□ -0.21
BRF1-218	ENST00000550692	PICALM	Q13492	652 aa		13.72	□□□□□ -0.21
BRF1-218	ENST00000550692	VGLL4	Q14135	290 aa		13.72	□□□□□ -0.21
BRF1-218	ENST00000550692	DCAF15	Q66K64	600 aa		13.72	□□□□□ -0.21
BRF1-218	ENST00000550692	SH3BP5L	Q7L8J4	393 aa		13.72	□□□□□ -0.21
BRF1-218	ENST00000550692	ADGRA1	Q86SQ6	560 aa		13.72	□□□□□ -0.21
BRF1-218	ENST00000550692	CNKSR2	Q8WXI2	1034 aa		13.72	□□□□□ -0.21
BRF1-218	ENST00000550692	HOOK2	Q96ED9	719 aa		13.72	□□□□□ -0.21

Retrieved 100 of 20,778 RNA–protein pairs in 20.9 ms