RNA–Protein interactions for RNA: ENST00000550267.1

VPS29-208, Transcript of VPS29, retromer complex component, humanhuman

TSL 2

Gene VPS29, Length 810 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-208ENST00000550267 CERS5Q8N5B7 392 aa13.48□□□□□ -0.25
VPS29-208ENST00000550267 PI4KAP1Q8N8J0 262 aa13.48□□□□□ -0.25
VPS29-208ENST00000550267 GNAI1P63096 354 aa13.47□□□□□ -0.25
VPS29-208ENST00000550267 SP3Q02447 781 aa13.47□□□□□ -0.25
VPS29-208ENST00000550267 NBPF12Q5TAG4 269 aaPredicted RBP13.47□□□□□ -0.25
VPS29-208ENST00000550267 CCDC30Q5VVM6 783 aa13.47□□□□□ -0.25
VPS29-208ENST00000550267 KSR2Q6VAB6 950 aa13.47□□□□□ -0.25
VPS29-208ENST00000550267 PTPN18Q99952 460 aa13.47□□□□□ -0.25
VPS29-208ENST00000550267 ANKRD2Q9GZV1 360 aa13.47□□□□□ -0.25
VPS29-208ENST00000550267 CD209Q9NNX6 404 aa13.47□□□□□ -0.25
VPS29-208ENST00000550267 PPP2R3BQ9Y5P8 575 aa13.47□□□□□ -0.25
VPS29-208ENST00000550267 LAMB1P07942 1786 aa13.47□□□□□ -0.25
VPS29-208ENST00000550267 HTTP42858 3142 aa13.46□□□□□ -0.25
VPS29-208ENST00000550267 AOX1Q06278 1338 aa13.46□□□□□ -0.25
VPS29-208ENST00000550267 NEURL1BA8MQ27 555 aa13.46□□□□□ -0.25
VPS29-208ENST00000550267 F8W031 263 aaPredicted RBP13.46□□□□□ -0.25
VPS29-208ENST00000550267 SNAP23O00161 211 aa13.46□□□□□ -0.25
VPS29-208ENST00000550267 USP2O75604 605 aaPredicted RBP13.46□□□□□ -0.25
VPS29-208ENST00000550267 ITGA6P23229 1130 aa13.46□□□□□ -0.25
VPS29-208ENST00000550267 KCNJ4P48050 445 aa13.46□□□□□ -0.25
VPS29-208ENST00000550267 NEXNQ0ZGT2 675 aa13.46□□□□□ -0.25
VPS29-208ENST00000550267 CFAP100Q494V2 611 aa13.46□□□□□ -0.25
VPS29-208ENST00000550267 OTUD7BQ6GQQ9 843 aa13.46□□□□□ -0.25
VPS29-208ENST00000550267 UBE3BQ7Z3V4 1068 aa13.46□□□□□ -0.25
VPS29-208ENST00000550267 MTMR14Q8NCE2 650 aa13.46□□□□□ -0.25
VPS29-208ENST00000550267 VEZTQ9HBM0 779 aa13.46□□□□□ -0.25
VPS29-208ENST00000550267 SEPT9Q9UHD8 586 aaPredicted RBP13.46□□□□□ -0.25
VPS29-208ENST00000550267 UNCXA6NJT0 531 aa13.45□□□□□ -0.26
VPS29-208ENST00000550267 H7C1W4 665 aa13.45□□□□□ -0.26
VPS29-208ENST00000550267 IREB2P48200 963 aaKnown RBP13.45□□□□□ -0.26
VPS29-208ENST00000550267 CHRNDQ07001 517 aa13.45□□□□□ -0.26
VPS29-208ENST00000550267 SUPT20HL1Q3ZLR7 823 aa13.45□□□□□ -0.26
VPS29-208ENST00000550267 TSPYL6Q8N831 410 aa13.45□□□□□ -0.26
VPS29-208ENST00000550267 DDX12PQ92771 950 aa13.45□□□□□ -0.26
VPS29-208ENST00000550267 PRMT6Q96LA8 375 aaPredicted RBP13.45□□□□□ -0.26
VPS29-208ENST00000550267 MPHOSPH8Q99549 860 aa13.45□□□□□ -0.26
VPS29-208ENST00000550267 IRS2Q9Y4H2 1338 aa13.44□□□□□ -0.26
VPS29-208ENST00000550267 TESPA1A2RU30 521 aaPredicted RBP13.44□□□□□ -0.26
VPS29-208ENST00000550267 APAF1O14727 1248 aa13.44□□□□□ -0.26
VPS29-208ENST00000550267 MYO1BO43795 1136 aa13.44□□□□□ -0.26
VPS29-208ENST00000550267 RASA3Q14644 834 aa13.44□□□□□ -0.26
VPS29-208ENST00000550267 ANKRD13AQ8IZ07 590 aa13.44□□□□□ -0.26
VPS29-208ENST00000550267 BBXQ8WY36 941 aaPredicted RBP13.44□□□□□ -0.26
VPS29-208ENST00000550267 ZNF333Q96JL9 665 aa13.44□□□□□ -0.26
VPS29-208ENST00000550267 ELP3Q9H9T3 547 aa13.44□□□□□ -0.26
VPS29-208ENST00000550267 MKI67P46013 3256 aaKnown RBP13.44□□□□□ -0.26
VPS29-208ENST00000550267 MYH3P11055 1940 aa13.44□□□□□ -0.26
VPS29-208ENST00000550267 TAF5LO75529 589 aa13.43□□□□□ -0.26
VPS29-208ENST00000550267 CALD1Q05682 793 aaKnown RBP13.43□□□□□ -0.26
VPS29-208ENST00000550267 G2E3Q7L622 706 aa13.43□□□□□ -0.26
VPS29-208ENST00000550267 HELBQ8NG08 1087 aaPredicted RBP13.43□□□□□ -0.26
VPS29-208ENST00000550267 OPTNQ96CV9 577 aa13.43□□□□□ -0.26
VPS29-208ENST00000550267 PLA2G12BQ9BX93 195 aa13.43□□□□□ -0.26
VPS29-208ENST00000550267 JAG2Q9Y219 1238 aa13.43□□□□□ -0.26
VPS29-208ENST00000550267 PTCH2Q9Y6C5 1203 aa13.43□□□□□ -0.26
VPS29-208ENST00000550267 ECM29Q5VYK3 1845 aa13.42□□□□□ -0.26
VPS29-208ENST00000550267 MYCP01106 439 aaPredicted RBP13.42□□□□□ -0.26
VPS29-208ENST00000550267 CSF1RP07333 972 aa13.42□□□□□ -0.26
VPS29-208ENST00000550267 RBM5P52756 815 aaKnown RBP eCLIP13.42□□□□□ -0.26
VPS29-208ENST00000550267 CASP7P55210 303 aa13.42□□□□□ -0.26
VPS29-208ENST00000550267 SLC4A8Q2Y0W8 1093 aa13.42□□□□□ -0.26
VPS29-208ENST00000550267 SLC9C1Q4G0N8 1177 aa13.42□□□□□ -0.26
VPS29-208ENST00000550267 CHMP4AQ9BY43 222 aa13.42□□□□□ -0.26
VPS29-208ENST00000550267 IL1R1P14778 569 aa13.41□□□□□ -0.26
VPS29-208ENST00000550267 GCKRQ14397 625 aa13.41□□□□□ -0.26
VPS29-208ENST00000550267 C15orf52Q6ZUT6 534 aaKnown RBP13.41□□□□□ -0.26
VPS29-208ENST00000550267 NBPF11Q86T75 865 aa13.41□□□□□ -0.26
VPS29-208ENST00000550267 BRI3BPQ8WY22 251 aa13.41□□□□□ -0.26
VPS29-208ENST00000550267 STK31Q9BXU1 1019 aa13.41□□□□□ -0.26
VPS29-208ENST00000550267 BRCA2P51587 3418 aa13.41□□□□□ -0.26
VPS29-208ENST00000550267 OTOFQ9HC10 1997 aa13.41□□□□□ -0.26
VPS29-208ENST00000550267 CCL15-CCL14A0A0B4J2E2 113 aa13.4□□□□□ -0.26
VPS29-208ENST00000550267 ANKRD18BA2A2Z9 1011 aa13.4□□□□□ -0.26
VPS29-208ENST00000550267 H0YGN5 161 aa13.4□□□□□ -0.26
VPS29-208ENST00000550267 FKBP1AP62942 108 aaKnown RBP13.4□□□□□ -0.26
VPS29-208ENST00000550267 KCNC4Q03721 635 aa13.4□□□□□ -0.26
VPS29-208ENST00000550267 TAF1CQ15572 869 aaPredicted RBP13.4□□□□□ -0.26
VPS29-208ENST00000550267 CCL15Q16663 113 aa13.4□□□□□ -0.26
VPS29-208ENST00000550267 PPP1R3FQ6ZSY5 799 aaPredicted RBP13.4□□□□□ -0.26
VPS29-208ENST00000550267 ZNF804AQ7Z570 1209 aa13.4□□□□□ -0.26
VPS29-208ENST00000550267 TSR2Q969E8 191 aaKnown RBP13.4□□□□□ -0.26
VPS29-208ENST00000550267 ZFYVE28Q9HCC9 887 aa13.4□□□□□ -0.26
VPS29-208ENST00000550267 CDKN2AIPQ9NXV6 580 aaPredicted RBP13.4□□□□□ -0.26
VPS29-208ENST00000550267 TSR3Q9UJK0 312 aaKnown RBP13.4□□□□□ -0.26
VPS29-208ENST00000550267 CENPFP49454 3210 aa13.39□□□□□ -0.27
VPS29-208ENST00000550267 DDX10Q13206 875 aaKnown RBP13.39□□□□□ -0.27
VPS29-208ENST00000550267 ARHGEF6Q15052 776 aa13.39□□□□□ -0.27
VPS29-208ENST00000550267 FAM43AQ8N2R8 423 aa13.39□□□□□ -0.27
VPS29-208ENST00000550267 SH3TC2Q8TF17 1288 aa13.39□□□□□ -0.27
VPS29-208ENST00000550267 TDRD3Q9H7E2 651 aaKnown RBP13.39□□□□□ -0.27
VPS29-208ENST00000550267 ZNF70Q9UC06 446 aaPredicted RBP13.39□□□□□ -0.27
VPS29-208ENST00000550267 TNFAIP1Q13829 316 aa13.38□□□□□ -0.27
VPS29-208ENST00000550267 VGLL4Q14135 290 aa13.38□□□□□ -0.27
VPS29-208ENST00000550267 NBR1Q14596 966 aa13.38□□□□□ -0.27
VPS29-208ENST00000550267 PACS2Q86VP3 889 aa13.38□□□□□ -0.27
VPS29-208ENST00000550267 LRCH3Q96II8 777 aa13.38□□□□□ -0.27
VPS29-208ENST00000550267 TEPSINQ96N21 525 aa13.38□□□□□ -0.27
VPS29-208ENST00000550267 ARHGAP39Q9C0H5 1083 aa13.38□□□□□ -0.27
VPS29-208ENST00000550267 A0A1B0GUL6 1792 aa13.37□□□□□ -0.27
VPS29-208ENST00000550267 SPDYE16A6NNV3 312 aaPredicted RBP13.37□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 8.9 ms