RNA–Protein interactions for RNA: ENST00000544622.4

YBX3-216, Transcript of Y-box binding protein 3, humanhuman

TSL 3

Gene YBX3, Length 685 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-216ENST00000544622 IGSF3O75054 1194 aa14.03□□□□□ -0.16
YBX3-216ENST00000544622 CYP2E1P05181 493 aaPredicted RBP14.03□□□□□ -0.16
YBX3-216ENST00000544622 TNNI2P48788 182 aa14.03□□□□□ -0.16
YBX3-216ENST00000544622 KIF23Q02241 960 aaPredicted RBP14.03□□□□□ -0.16
YBX3-216ENST00000544622 MECOMQ03112 1051 aa14.03□□□□□ -0.16
YBX3-216ENST00000544622 PRKG1Q13976 671 aa14.03□□□□□ -0.16
YBX3-216ENST00000544622 CSRNP1Q96S65 589 aa14.03□□□□□ -0.16
YBX3-216ENST00000544622 ANGEL1Q9UNK9 670 aaKnown RBP14.03□□□□□ -0.16
YBX3-216ENST00000544622 AKAP11Q9UKA4 1901 aa14.02□□□□□ -0.16
YBX3-216ENST00000544622 RPAP1Q9BWH6 1393 aaPredicted RBP14.02□□□□□ -0.17
YBX3-216ENST00000544622 RAB11FIP3O75154 756 aa14.02□□□□□ -0.17
YBX3-216ENST00000544622 NFIAQ12857 509 aa14.02□□□□□ -0.17
YBX3-216ENST00000544622 TTC39AQ5SRH9 613 aa14.02□□□□□ -0.17
YBX3-216ENST00000544622 COL13A1Q5TAT6 717 aaPredicted RBP14.02□□□□□ -0.17
YBX3-216ENST00000544622 ERICH6Q7L0X2 663 aa14.02□□□□□ -0.17
YBX3-216ENST00000544622 FAM151AQ8WW52 585 aa14.02□□□□□ -0.17
YBX3-216ENST00000544622 KIF1BPQ96EK5 621 aa14.02□□□□□ -0.17
YBX3-216ENST00000544622 IDI2Q9BXS1 227 aa14.02□□□□□ -0.17
YBX3-216ENST00000544622 FAM198AQ9UFP1 575 aa14.02□□□□□ -0.17
YBX3-216ENST00000544622 RFX7Q2KHR2 1363 aa14.01□□□□□ -0.17
YBX3-216ENST00000544622 MROH7-TTC4A0A0A0MT08 1334 aa14.01□□□□□ -0.17
YBX3-216ENST00000544622 HSPA8P11142 646 aaKnown RBP14.01□□□□□ -0.17
YBX3-216ENST00000544622 CTCFP49711 727 aaPredicted RBP14.01□□□□□ -0.17
YBX3-216ENST00000544622 RHBDL3P58872 404 aa14.01□□□□□ -0.17
YBX3-216ENST00000544622 TTLL12Q14166 644 aaPredicted RBP14.01□□□□□ -0.17
YBX3-216ENST00000544622 DZIP1Q86YF9 867 aaKnown RBP14.01□□□□□ -0.17
YBX3-216ENST00000544622 SLF2Q8IX21 1173 aa14.01□□□□□ -0.17
YBX3-216ENST00000544622 REM2Q8IYK8 340 aaPredicted RBP14.01□□□□□ -0.17
YBX3-216ENST00000544622 AIDAQ96BJ3 306 aa14.01□□□□□ -0.17
YBX3-216ENST00000544622 IL1RAPL2Q9NP60 686 aa14.01□□□□□ -0.17
YBX3-216ENST00000544622 PRDM10Q9NQV6 1147 aa14.01□□□□□ -0.17
YBX3-216ENST00000544622 SNRKQ9NRH2 765 aa14.01□□□□□ -0.17
YBX3-216ENST00000544622 USP40Q9NVE5 1235 aa14.01□□□□□ -0.17
YBX3-216ENST00000544622 TMOD2Q9NZR1 351 aa14.01□□□□□ -0.17
YBX3-216ENST00000544622 CA12O43570 354 aa14□□□□□ -0.17
YBX3-216ENST00000544622 WDHD1O75717 1129 aaPredicted RBP14□□□□□ -0.17
YBX3-216ENST00000544622 ZAP70P43403 619 aa14□□□□□ -0.17
YBX3-216ENST00000544622 TM4SF4P48230 202 aa14□□□□□ -0.17
YBX3-216ENST00000544622 PPP1R3FQ6ZSY5 799 aaPredicted RBP14□□□□□ -0.17
YBX3-216ENST00000544622 AACSQ86V21 672 aa14□□□□□ -0.17
YBX3-216ENST00000544622 CLASRPQ8N2M8 674 aaKnown RBP14□□□□□ -0.17
YBX3-216ENST00000544622 DDX55Q8NHQ9 600 aaKnown RBP eCLIP14□□□□□ -0.17
YBX3-216ENST00000544622 CLMNQ96JQ2 1002 aa14□□□□□ -0.17
YBX3-216ENST00000544622 NPM3O75607 178 aaKnown RBP13.99□□□□□ -0.17
YBX3-216ENST00000544622 IREB2P48200 963 aaKnown RBP13.99□□□□□ -0.17
YBX3-216ENST00000544622 LBX1P52954 281 aa13.99□□□□□ -0.17
YBX3-216ENST00000544622 SPRYD7Q5W111 196 aa13.99□□□□□ -0.17
YBX3-216ENST00000544622 ZFPM1Q8IX07 1006 aa13.99□□□□□ -0.17
YBX3-216ENST00000544622 ANKRD13AQ8IZ07 590 aa13.99□□□□□ -0.17
YBX3-216ENST00000544622 PPIL4Q8WUA2 492 aaKnown RBP eCLIP13.99□□□□□ -0.17
YBX3-216ENST00000544622 DCTPP1Q9H773 170 aa13.99□□□□□ -0.17
YBX3-216ENST00000544622 PCDHB15Q9Y5E8 787 aa13.99□□□□□ -0.17
YBX3-216ENST00000544622 MYH2Q9UKX2 1941 aa13.98□□□□□ -0.17
YBX3-216ENST00000544622 ENTPD3O75355 529 aa13.98□□□□□ -0.17
YBX3-216ENST00000544622 MAP4K4O95819 1239 aaPredicted RBP13.98□□□□□ -0.17
YBX3-216ENST00000544622 LDHCP07864 332 aa13.98□□□□□ -0.17
YBX3-216ENST00000544622 ZBTB48P10074 688 aaPredicted RBP13.98□□□□□ -0.17
YBX3-216ENST00000544622 BTDP43251 543 aa13.98□□□□□ -0.17
YBX3-216ENST00000544622 GSTO1P78417 241 aa13.98□□□□□ -0.17
YBX3-216ENST00000544622 MAP3K10Q02779 954 aa13.98□□□□□ -0.17
YBX3-216ENST00000544622 SH3BP5LQ7L8J4 393 aa13.98□□□□□ -0.17
YBX3-216ENST00000544622 SLC10A4Q96EP9 437 aa13.98□□□□□ -0.17
YBX3-216ENST00000544622 BEGAINQ9BUH8 593 aa13.98□□□□□ -0.17
YBX3-216ENST00000544622 PIH1D3Q9NQM4 214 aaKnown RBP13.98□□□□□ -0.17
YBX3-216ENST00000544622 RNF186Q9NXI6 227 aa13.98□□□□□ -0.17
YBX3-216ENST00000544622 SAGE1Q9NXZ1 904 aa13.98□□□□□ -0.17
YBX3-216ENST00000544622 RAI14Q9P0K7 980 aa13.98□□□□□ -0.17
YBX3-216ENST00000544622 LRP2BPQ9P2M1 347 aa13.98□□□□□ -0.17
YBX3-216ENST00000544622 ATRNL1Q5VV63 1379 aa13.97□□□□□ -0.17
YBX3-216ENST00000544622 PPP4CP60510 307 aa13.97□□□□□ -0.17
YBX3-216ENST00000544622 TCP10Q12799 353 aa13.97□□□□□ -0.17
YBX3-216ENST00000544622 ADGRA1Q86SQ6 560 aa13.97□□□□□ -0.17
YBX3-216ENST00000544622 HOOK2Q96ED9 719 aa13.97□□□□□ -0.17
YBX3-216ENST00000544622 ANTXR1Q9H6X2 564 aa13.97□□□□□ -0.17
YBX3-216ENST00000544622 DDX4Q9NQI0 724 aaKnown RBP13.97□□□□□ -0.17
YBX3-216ENST00000544622 ZNF112Q9UJU3 913 aa13.97□□□□□ -0.17
YBX3-216ENST00000544622 APBB1O00213 710 aa13.96□□□□□ -0.17
YBX3-216ENST00000544622 GJA5P36382 358 aa13.96□□□□□ -0.17
YBX3-216ENST00000544622 RGS3P49796 1198 aa13.96□□□□□ -0.17
YBX3-216ENST00000544622 MAP3K9P80192 1104 aa13.96□□□□□ -0.17
YBX3-216ENST00000544622 VGLL4Q14135 290 aa13.96□□□□□ -0.17
YBX3-216ENST00000544622 WNK4Q96J92 1243 aa13.96□□□□□ -0.17
YBX3-216ENST00000544622 LRRCC1Q9C099 1032 aa13.96□□□□□ -0.17
YBX3-216ENST00000544622 NDUFB9Q9Y6M9 179 aa13.96□□□□□ -0.17
YBX3-216ENST00000544622 TESPA1A2RU30 521 aaPredicted RBP13.95□□□□□ -0.18
YBX3-216ENST00000544622 DDTLA6NHG4 134 aaPredicted RBP13.95□□□□□ -0.18
YBX3-216ENST00000544622 IFIT2P09913 472 aaKnown RBP13.95□□□□□ -0.18
YBX3-216ENST00000544622 INHBEP58166 350 aa13.95□□□□□ -0.18
YBX3-216ENST00000544622 NAA16Q6N069 864 aaPredicted RBP13.95□□□□□ -0.18
YBX3-216ENST00000544622 TMED8Q6PL24 325 aaPredicted RBP13.95□□□□□ -0.18
YBX3-216ENST00000544622 MIGA2Q7L4E1 593 aa13.95□□□□□ -0.18
YBX3-216ENST00000544622 CRBNQ96SW2 442 aa13.95□□□□□ -0.18
YBX3-216ENST00000544622 CFHR5Q9BXR6 569 aa13.95□□□□□ -0.18
YBX3-216ENST00000544622 TSKSQ9UJT2 592 aa13.95□□□□□ -0.18
YBX3-216ENST00000544622 LAMB1P07942 1786 aa13.94□□□□□ -0.18
YBX3-216ENST00000544622 PHF20L1A8MW92 1017 aa13.94□□□□□ -0.18
YBX3-216ENST00000544622 SMARCA5O60264 1052 aaPredicted RBP13.94□□□□□ -0.18
YBX3-216ENST00000544622 TRPA1O75762 1119 aa13.94□□□□□ -0.18
YBX3-216ENST00000544622 ATP5JP18859 108 aa13.94□□□□□ -0.18
YBX3-216ENST00000544622 MKRN3Q13064 507 aaKnown RBP13.94□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 59.1 ms