RNA–Protein interactions for RNA: ENST00000542953.1

NPIPB3-211, Transcript of nuclear pore complex interacting protein family member B3, humanhuman

TSL 4

Gene NPIPB3, Length 573 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPIPB3-211ENST00000542953 CDH23Q9H251 3354 aa6.37□□□□□ -1.39
NPIPB3-211ENST00000542953 TLR2O60603 784 aa6.36□□□□□ -1.39
NPIPB3-211ENST00000542953 CCL5P13501 91 aa6.36□□□□□ -1.39
NPIPB3-211ENST00000542953 PRSS12P56730 875 aa6.36□□□□□ -1.39
NPIPB3-211ENST00000542953 TAF1CQ15572 869 aaPredicted RBP6.36□□□□□ -1.39
NPIPB3-211ENST00000542953 TSR1Q2NL82 804 aaKnown RBP6.36□□□□□ -1.39
NPIPB3-211ENST00000542953 STRIP1Q5VSL9 837 aa6.36□□□□□ -1.39
NPIPB3-211ENST00000542953 ARHGAP39Q9C0H5 1083 aa6.36□□□□□ -1.39
NPIPB3-211ENST00000542953 ZCCHC17Q9NP64 241 aaKnown RBP6.36□□□□□ -1.39
NPIPB3-211ENST00000542953 PIEZO1Q92508 2521 aa6.35□□□□□ -1.39
NPIPB3-211ENST00000542953 MED23Q9ULK4 1368 aa6.35□□□□□ -1.39
NPIPB3-211ENST00000542953 ZNF804BA4D1E1 1349 aa6.35□□□□□ -1.39
NPIPB3-211ENST00000542953 XDHP47989 1333 aa6.35□□□□□ -1.39
NPIPB3-211ENST00000542953 PER1O15534 1290 aaPredicted RBP6.35□□□□□ -1.39
NPIPB3-211ENST00000542953 GRK4P32298 578 aa6.35□□□□□ -1.39
NPIPB3-211ENST00000542953 IREB2P48200 963 aaKnown RBP6.35□□□□□ -1.39
NPIPB3-211ENST00000542953 KIF22Q14807 665 aa6.35□□□□□ -1.39
NPIPB3-211ENST00000542953 PROSER3Q2NL68 480 aa6.35□□□□□ -1.39
NPIPB3-211ENST00000542953 SUPT20HL1Q3ZLR7 823 aa6.35□□□□□ -1.39
NPIPB3-211ENST00000542953 ANKRD13AQ8IZ07 590 aa6.35□□□□□ -1.39
NPIPB3-211ENST00000542953 TDHQ8IZJ6 230 aa6.35□□□□□ -1.39
NPIPB3-211ENST00000542953 MTMR14Q8NCE2 650 aa6.35□□□□□ -1.39
NPIPB3-211ENST00000542953 U2AF1L4Q8WU68 220 aaKnown RBP6.35□□□□□ -1.39
NPIPB3-211ENST00000542953 ZNF516Q92618 1163 aa6.35□□□□□ -1.39
NPIPB3-211ENST00000542953 OPTNQ96CV9 577 aa6.35□□□□□ -1.39
NPIPB3-211ENST00000542953 GUCD1Q96NT3 240 aa6.35□□□□□ -1.39
NPIPB3-211ENST00000542953 THUMPD2Q9BTF0 503 aaKnown RBP6.35□□□□□ -1.39
NPIPB3-211ENST00000542953 ANKIB1Q9P2G1 1089 aa6.35□□□□□ -1.39
NPIPB3-211ENST00000542953 SRRDQ9UH36 339 aa6.35□□□□□ -1.39
NPIPB3-211ENST00000542953 RIPOR2Q9Y4F9 1068 aa6.35□□□□□ -1.39
NPIPB3-211ENST00000542953 COL2A1P02458 1487 aaPredicted RBP6.34□□□□□ -1.39
NPIPB3-211ENST00000542953 SMAPO00193 183 aa6.34□□□□□ -1.39
NPIPB3-211ENST00000542953 USP2O75604 605 aaPredicted RBP6.34□□□□□ -1.39
NPIPB3-211ENST00000542953 SGPL1O95470 568 aa6.34□□□□□ -1.39
NPIPB3-211ENST00000542953 CTGFP29279 349 aa6.34□□□□□ -1.39
NPIPB3-211ENST00000542953 GTF2A2P52657 109 aa6.34□□□□□ -1.39
NPIPB3-211ENST00000542953 COPS6Q7L5N1 327 aa6.34□□□□□ -1.39
NPIPB3-211ENST00000542953 FAM43AQ8N2R8 423 aa6.34□□□□□ -1.39
NPIPB3-211ENST00000542953 HELBQ8NG08 1087 aaPredicted RBP6.34□□□□□ -1.39
NPIPB3-211ENST00000542953 SYMPKQ92797 1274 aaKnown RBP6.34□□□□□ -1.39
NPIPB3-211ENST00000542953 TATDN2Q93075 761 aa6.34□□□□□ -1.39
NPIPB3-211ENST00000542953 FAM89AQ96GI7 184 aa6.34□□□□□ -1.39
NPIPB3-211ENST00000542953 TRIM47Q96LD4 638 aa6.34□□□□□ -1.39
NPIPB3-211ENST00000542953 ISCA1Q9BUE6 129 aa6.34□□□□□ -1.39
NPIPB3-211ENST00000542953 MXD3Q9BW11 206 aa6.34□□□□□ -1.39
NPIPB3-211ENST00000542953 RNF208Q9H0X6 261 aa6.34□□□□□ -1.39
NPIPB3-211ENST00000542953 ZSWIM8A7E2V4 1837 aa6.34□□□□□ -1.4
NPIPB3-211ENST00000542953 FAM205AQ6ZU69 1335 aa6.33□□□□□ -1.4
NPIPB3-211ENST00000542953 ADGRA2Q96PE1 1338 aa6.33□□□□□ -1.4
NPIPB3-211ENST00000542953 CCL15-CCL14A0A0B4J2E2 113 aa6.33□□□□□ -1.4
NPIPB3-211ENST00000542953 WDHD1O75717 1129 aaPredicted RBP6.33□□□□□ -1.4
NPIPB3-211ENST00000542953 ATP2B4P23634 1241 aa6.33□□□□□ -1.4
NPIPB3-211ENST00000542953 MAGEA10P43363 369 aaPredicted RBP6.33□□□□□ -1.4
NPIPB3-211ENST00000542953 UBXN2AP68543 259 aa6.33□□□□□ -1.4
NPIPB3-211ENST00000542953 TRIM28Q13263 835 aaKnown RBP6.33□□□□□ -1.4
NPIPB3-211ENST00000542953 CCL15Q16663 113 aa6.33□□□□□ -1.4
NPIPB3-211ENST00000542953 NBPF12Q5TAG4 269 aaPredicted RBP6.33□□□□□ -1.4
NPIPB3-211ENST00000542953 C17orf99Q6UX52 265 aa6.33□□□□□ -1.4
NPIPB3-211ENST00000542953 XAGE3Q8WTP9 111 aa6.33□□□□□ -1.4
NPIPB3-211ENST00000542953 COA1Q9GZY4 146 aa6.33□□□□□ -1.4
NPIPB3-211ENST00000542953 OTOFQ9HC10 1997 aa6.32□□□□□ -1.4
NPIPB3-211ENST00000542953 SPDYE16A6NNV3 312 aaPredicted RBP6.32□□□□□ -1.4
NPIPB3-211ENST00000542953 IRS4O14654 1257 aaPredicted RBP6.32□□□□□ -1.4
NPIPB3-211ENST00000542953 ANXA1P04083 346 aa6.32□□□□□ -1.4
NPIPB3-211ENST00000542953 OSBPP22059 807 aa6.32□□□□□ -1.4
NPIPB3-211ENST00000542953 HOXD10P28358 340 aa6.32□□□□□ -1.4
NPIPB3-211ENST00000542953 PPP1R3FQ6ZSY5 799 aaPredicted RBP6.32□□□□□ -1.4
NPIPB3-211ENST00000542953 RAET1EQ8TD07 263 aa6.32□□□□□ -1.4
NPIPB3-211ENST00000542953 FAM122AQ96E09 287 aa6.32□□□□□ -1.4
NPIPB3-211ENST00000542953 UNC93B1Q9H1C4 597 aa6.32□□□□□ -1.4
NPIPB3-211ENST00000542953 ELP3Q9H9T3 547 aa6.32□□□□□ -1.4
NPIPB3-211ENST00000542953 PAK6Q9NQU5 681 aaPredicted RBP6.32□□□□□ -1.4
NPIPB3-211ENST00000542953 SEC31BQ9NQW1 1179 aa6.32□□□□□ -1.4
NPIPB3-211ENST00000542953 RAPGEFL1Q9UHV5 662 aa6.32□□□□□ -1.4
NPIPB3-211ENST00000542953 PNMA3Q9UL41 463 aa6.32□□□□□ -1.4
NPIPB3-211ENST00000542953 BDP1A6H8Y1 2624 aa6.32□□□□□ -1.4
NPIPB3-211ENST00000542953 MYPNQ86TC9 1320 aa6.31□□□□□ -1.4
NPIPB3-211ENST00000542953 SYNGAP1Q96PV0 1343 aa6.31□□□□□ -1.4
NPIPB3-211ENST00000542953 SPDYE5A6NIY4 337 aa6.31□□□□□ -1.4
NPIPB3-211ENST00000542953 BTBD19C9JJ37 291 aa6.31□□□□□ -1.4
NPIPB3-211ENST00000542953 CETPP11597 493 aa6.31□□□□□ -1.4
NPIPB3-211ENST00000542953 PSMC4P43686 418 aa6.31□□□□□ -1.4
NPIPB3-211ENST00000542953 VGLL4Q14135 290 aa6.31□□□□□ -1.4
NPIPB3-211ENST00000542953 DLGAP5Q15398 846 aa6.31□□□□□ -1.4
NPIPB3-211ENST00000542953 CC2D1BQ5T0F9 858 aaKnown RBP6.31□□□□□ -1.4
NPIPB3-211ENST00000542953 TTLL5Q6EMB2 1281 aa6.31□□□□□ -1.4
NPIPB3-211ENST00000542953 NECAB2Q7Z6G3 386 aa6.31□□□□□ -1.4
NPIPB3-211ENST00000542953 KIAA0825Q8IV33 1275 aa6.31□□□□□ -1.4
NPIPB3-211ENST00000542953 PLBD2Q8NHP8 589 aa6.31□□□□□ -1.4
NPIPB3-211ENST00000542953 DDX55Q8NHQ9 600 aaKnown RBP eCLIP6.31□□□□□ -1.4
NPIPB3-211ENST00000542953 ZBTB4Q9P1Z0 1013 aaPredicted RBP6.31□□□□□ -1.4
NPIPB3-211ENST00000542953 FAM198AQ9UFP1 575 aa6.31□□□□□ -1.4
NPIPB3-211ENST00000542953 ZMYND8Q9ULU4 1186 aaPredicted RBP6.31□□□□□ -1.4
NPIPB3-211ENST00000542953 NUDCQ9Y266 331 aa6.31□□□□□ -1.4
NPIPB3-211ENST00000542953 ALPK3Q96L96 1907 aa6.31□□□□□ -1.4
NPIPB3-211ENST00000542953 IRS2Q9Y4H2 1338 aa6.3□□□□□ -1.4
NPIPB3-211ENST00000542953 TNFRSF10AO00220 468 aa6.3□□□□□ -1.4
NPIPB3-211ENST00000542953 RNF40O75150 1001 aa6.3□□□□□ -1.4
NPIPB3-211ENST00000542953 DGAT1O75907 488 aa6.3□□□□□ -1.4
NPIPB3-211ENST00000542953 U2AF1L5P0DN76 240 aaPredicted RBP6.3□□□□□ -1.4
Retrieved 100 of 20,778 RNA–protein pairs in 37.3 ms