RNA–Protein interactions for RNA: ENST00000541713.5

PTPN1-202, Transcript of protein tyrosine phosphatase, non-receptor type 1, humanhuman

TSL 2 BASIC

Gene PTPN1, Length 3,469 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN1-202ENST00000541713 PKNOX2Q96KN3 472 aa15.69■□□□□ 0.1
PTPN1-202ENST00000541713 RIPOR2Q9Y4F9 1068 aa15.69■□□□□ 0.1
PTPN1-202ENST00000541713 FAM205CA6NFA0 338 aa15.68■□□□□ 0.1
PTPN1-202ENST00000541713 EXOC5O00471 708 aa15.68■□□□□ 0.1
PTPN1-202ENST00000541713 PDE8BO95263 885 aa15.68■□□□□ 0.1
PTPN1-202ENST00000541713 CPLX2Q6PUV4 134 aaKnown RBP15.68■□□□□ 0.1
PTPN1-202ENST00000541713 APOA5Q6Q788 366 aa15.68■□□□□ 0.1
PTPN1-202ENST00000541713 LCORLQ8N3X6 602 aa15.68■□□□□ 0.1
PTPN1-202ENST00000541713 ENGASEQ8NFI3 743 aa15.68■□□□□ 0.1
PTPN1-202ENST00000541713 DPF2Q92785 391 aa15.68■□□□□ 0.1
PTPN1-202ENST00000541713 SPTLC3Q9NUV7 552 aa15.68■□□□□ 0.1
PTPN1-202ENST00000541713 ADD2P35612 726 aa15.68■□□□□ 0.1
PTPN1-202ENST00000541713 SUSD4Q5VX71 490 aa15.68■□□□□ 0.1
PTPN1-202ENST00000541713 SYT10Q6XYQ8 523 aa15.68■□□□□ 0.1
PTPN1-202ENST00000541713 NAT10Q9H0A0 1025 aaKnown RBP15.68■□□□□ 0.1
PTPN1-202ENST00000541713 NIP7Q9Y221 180 aaKnown RBP eCLIP15.68■□□□□ 0.1
PTPN1-202ENST00000541713 ADALQ6DHV7 355 aa15.67■□□□□ 0.1
PTPN1-202ENST00000541713 CNNM3Q8NE01 707 aa15.67■□□□□ 0.1
PTPN1-202ENST00000541713 ZNF215Q9UL58 517 aaPredicted RBP15.67■□□□□ 0.1
PTPN1-202ENST00000541713 MAP3K15Q6ZN16 1313 aa15.67■□□□□ 0.1
PTPN1-202ENST00000541713 CHD2O14647 1828 aaKnown RBP15.67■□□□□ 0.1
PTPN1-202ENST00000541713 C5P01031 1676 aa15.67■□□□□ 0.1
PTPN1-202ENST00000541713 USP49Q70CQ1 688 aa15.67■□□□□ 0.1
PTPN1-202ENST00000541713 TMEM232C9JQI7 657 aa15.67■□□□□ 0.1
PTPN1-202ENST00000541713 SLC51AQ86UW1 340 aa15.67■□□□□ 0.1
PTPN1-202ENST00000541713 SPATA5Q8NB90 893 aa15.67■□□□□ 0.1
PTPN1-202ENST00000541713 TNS3Q68CZ2 1445 aa15.67■□□□□ 0.1
PTPN1-202ENST00000541713 LONRF3Q496Y0 759 aa15.66■□□□□ 0.1
PTPN1-202ENST00000541713 OXER1Q8TDS5 423 aa15.66■□□□□ 0.1
PTPN1-202ENST00000541713 CARD10Q9BWT7 1032 aa15.66■□□□□ 0.1
PTPN1-202ENST00000541713 ZSWIM4Q9H7M6 989 aa15.66■□□□□ 0.1
PTPN1-202ENST00000541713 CYP7A1P22680 504 aa15.66■□□□□ 0.1
PTPN1-202ENST00000541713 MFSD6Q6ZSS7 791 aa15.66■□□□□ 0.1
PTPN1-202ENST00000541713 IFNL3Q8IZI9 196 aa15.66■□□□□ 0.1
PTPN1-202ENST00000541713 EEF2KMTQ96G04 330 aa15.66■□□□□ 0.1
PTPN1-202ENST00000541713 UBN2Q6ZU65 1347 aa15.66■□□□□ 0.1
PTPN1-202ENST00000541713 ALDH8A1Q9H2A2 487 aaPredicted RBP15.66■□□□□ 0.1
PTPN1-202ENST00000541713 CABP5Q9NP86 173 aa15.66■□□□□ 0.1
PTPN1-202ENST00000541713 RTEL1Q9NZ71 1219 aa15.66■□□□□ 0.1
PTPN1-202ENST00000541713 TPM3P06753 285 aa15.65■□□□□ 0.1
PTPN1-202ENST00000541713 ZFYP08048 801 aaPredicted RBP15.65■□□□□ 0.1
PTPN1-202ENST00000541713 SFPQP23246 707 aaKnown RBP eCLIP15.65■□□□□ 0.1
PTPN1-202ENST00000541713 DYNLL1P63167 89 aaKnown RBP15.65■□□□□ 0.1
PTPN1-202ENST00000541713 EPC1Q9H2F5 836 aa15.65■□□□□ 0.1
PTPN1-202ENST00000541713 EPB41L4AQ9HCS5 686 aaPredicted RBP15.65■□□□□ 0.1
PTPN1-202ENST00000541713 TACC3Q9Y6A5 838 aa15.65■□□□□ 0.1
PTPN1-202ENST00000541713 MAP3K12Q12852 859 aa15.65■□□□□ 0.1
PTPN1-202ENST00000541713 GPIHBP1Q8IV16 184 aa15.65■□□□□ 0.1
PTPN1-202ENST00000541713 SMYD4Q8IYR2 804 aaPredicted RBP15.65■□□□□ 0.1
PTPN1-202ENST00000541713 LRRN4CLQ8ND94 238 aa15.65■□□□□ 0.1
PTPN1-202ENST00000541713 KCNG4Q8TDN1 519 aa15.65■□□□□ 0.1
PTPN1-202ENST00000541713 FANCLQ9NW38 375 aa15.65■□□□□ 0.1
PTPN1-202ENST00000541713 TFCP2L1Q9NZI6 479 aa15.65■□□□□ 0.1
PTPN1-202ENST00000541713 VPS54Q9P1Q0 977 aa15.65■□□□□ 0.1
PTPN1-202ENST00000541713 POLR2DO15514 142 aaKnown RBP15.64■□□□□ 0.1
PTPN1-202ENST00000541713 KCNQ2O43526 872 aa15.64■□□□□ 0.1
PTPN1-202ENST00000541713 CIAO1O76071 339 aa15.64■□□□□ 0.1
PTPN1-202ENST00000541713 ELF2Q15723 593 aa15.64■□□□□ 0.1
PTPN1-202ENST00000541713 CTAGE5O15320 804 aa15.64■□□□□ 0.09
PTPN1-202ENST00000541713 TERF1P54274 439 aa15.64■□□□□ 0.09
PTPN1-202ENST00000541713 UBASH3AP57075 661 aa15.64■□□□□ 0.09
PTPN1-202ENST00000541713 SSRP1Q08945 709 aaKnown RBP15.64■□□□□ 0.09
PTPN1-202ENST00000541713 SHC4Q6S5L8 630 aa15.64■□□□□ 0.09
PTPN1-202ENST00000541713 DIS3L2Q8IYB7 885 aaKnown RBP15.64■□□□□ 0.09
PTPN1-202ENST00000541713 UTP14AQ9BVJ6 771 aaKnown RBP15.64■□□□□ 0.09
PTPN1-202ENST00000541713 LMO7Q8WWI1 1683 aa15.64■□□□□ 0.09
PTPN1-202ENST00000541713 NOM1Q5C9Z4 860 aaKnown RBP15.64■□□□□ 0.09
PTPN1-202ENST00000541713 STRBPQ96SI9 672 aaKnown RBP15.64■□□□□ 0.09
PTPN1-202ENST00000541713 GPR108Q9NPR9 543 aa15.64■□□□□ 0.09
PTPN1-202ENST00000541713 MAPK8IP1Q9UQF2 711 aa15.64■□□□□ 0.09
PTPN1-202ENST00000541713 CAMTA1Q9Y6Y1 1673 aa15.63■□□□□ 0.09
PTPN1-202ENST00000541713 ERICH2A1L162 156 aa15.63■□□□□ 0.09
PTPN1-202ENST00000541713 PES1O00541 588 aaKnown RBP15.63■□□□□ 0.09
PTPN1-202ENST00000541713 CDC25AP30304 524 aa15.63■□□□□ 0.09
PTPN1-202ENST00000541713 PIP4K2BP78356 416 aa15.63■□□□□ 0.09
PTPN1-202ENST00000541713 NCBP1Q09161 790 aaKnown RBP15.63■□□□□ 0.09
PTPN1-202ENST00000541713 CCDC94Q9BW85 323 aaPredicted RBP15.63■□□□□ 0.09
PTPN1-202ENST00000541713 PCDHA5Q9Y5H7 936 aa15.63■□□□□ 0.09
PTPN1-202ENST00000541713 NMT2O60551 498 aa15.63■□□□□ 0.09
PTPN1-202ENST00000541713 CYP19A1P11511 503 aaPredicted RBP15.63■□□□□ 0.09
PTPN1-202ENST00000541713 FANCCQ00597 558 aa15.63■□□□□ 0.09
PTPN1-202ENST00000541713 PLIN2Q99541 437 aa15.63■□□□□ 0.09
PTPN1-202ENST00000541713 UBAC1Q9BSL1 405 aa15.63■□□□□ 0.09
PTPN1-202ENST00000541713 DNAI1Q9UI46 699 aa15.63■□□□□ 0.09
PTPN1-202ENST00000541713 ADKP55263 362 aaKnown RBP15.63■□□□□ 0.09
PTPN1-202ENST00000541713 FAM47AQ5JRC9 791 aa15.63■□□□□ 0.09
PTPN1-202ENST00000541713 PCDHB6Q9Y5E3 794 aa15.63■□□□□ 0.09
PTPN1-202ENST00000541713 SH2B2O14492 632 aaPredicted RBP15.62■□□□□ 0.09
PTPN1-202ENST00000541713 PDE8AO60658 829 aa15.62■□□□□ 0.09
PTPN1-202ENST00000541713 SLC5A1P13866 664 aa15.62■□□□□ 0.09
PTPN1-202ENST00000541713 WTAPQ15007 396 aa15.62■□□□□ 0.09
PTPN1-202ENST00000541713 DHX58Q96C10 678 aa15.62■□□□□ 0.09
PTPN1-202ENST00000541713 SALL1Q9NSC2 1324 aa15.62■□□□□ 0.09
PTPN1-202ENST00000541713 PRR29P0C7W0 189 aa15.62■□□□□ 0.09
PTPN1-202ENST00000541713 AKAP17AQ02040 695 aaKnown RBP15.62■□□□□ 0.09
PTPN1-202ENST00000541713 SAFBQ15424 915 aaKnown RBP eCLIP15.62■□□□□ 0.09
PTPN1-202ENST00000541713 ARMCX5Q6P1M9 558 aa15.62■□□□□ 0.09
PTPN1-202ENST00000541713 RBM43Q6ZSC3 357 aaKnown RBP15.62■□□□□ 0.09
PTPN1-202ENST00000541713 MAP7D2Q96T17 732 aa15.62■□□□□ 0.09
PTPN1-202ENST00000541713 TPM4P67936 248 aa15.62■□□□□ 0.09
Retrieved 100 of 20,778 RNA–protein pairs in 18.7 ms