RNA–Protein interactions for RNA: ENST00000540669.1

VPS33A-204, Transcript of VPS33A, CORVET/HOPS core subunit, humanhuman

TSL 3

Gene VPS33A, Length 455 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33A-204ENST00000540669 MKRN1Q9UHC7 482 aaKnown RBP12.73□□□□□ -0.37
VPS33A-204ENST00000540669 RPAP1Q9BWH6 1393 aaPredicted RBP12.72□□□□□ -0.37
VPS33A-204ENST00000540669 CCDC171Q6TFL3 1326 aa12.72□□□□□ -0.37
VPS33A-204ENST00000540669 GMPSP49915 693 aaPredicted RBP12.72□□□□□ -0.37
VPS33A-204ENST00000540669 EIF6P56537 245 aaKnown RBP12.72□□□□□ -0.37
VPS33A-204ENST00000540669 NAA16Q6N069 864 aaPredicted RBP12.72□□□□□ -0.37
VPS33A-204ENST00000540669 DZIP1Q86YF9 867 aaKnown RBP12.72□□□□□ -0.37
VPS33A-204ENST00000540669 CERS3Q8IU89 383 aa12.72□□□□□ -0.37
VPS33A-204ENST00000540669 IL17RAQ96F46 866 aa12.72□□□□□ -0.37
VPS33A-204ENST00000540669 BACH2Q9BYV9 841 aa12.72□□□□□ -0.37
VPS33A-204ENST00000540669 RAI14Q9P0K7 980 aa12.72□□□□□ -0.37
VPS33A-204ENST00000540669 TTF2Q9UNY4 1162 aaKnown RBP12.72□□□□□ -0.37
VPS33A-204ENST00000540669 MYH1P12882 1939 aa12.72□□□□□ -0.37
VPS33A-204ENST00000540669 SPDYE2BA6NHP3 402 aa12.71□□□□□ -0.37
VPS33A-204ENST00000540669 SPDYE6P0CI01 402 aa12.71□□□□□ -0.37
VPS33A-204ENST00000540669 CYP7A1P22680 504 aa12.71□□□□□ -0.37
VPS33A-204ENST00000540669 CRKP46108 304 aa12.71□□□□□ -0.37
VPS33A-204ENST00000540669 GSTO1P78417 241 aa12.71□□□□□ -0.37
VPS33A-204ENST00000540669 KIAA0825Q8IV33 1275 aa12.71□□□□□ -0.37
VPS33A-204ENST00000540669 LCORLQ8N3X6 602 aa12.71□□□□□ -0.37
VPS33A-204ENST00000540669 STRBPQ96SI9 672 aaKnown RBP12.71□□□□□ -0.37
VPS33A-204ENST00000540669 LSG1Q9H089 658 aaKnown RBP12.71□□□□□ -0.37
VPS33A-204ENST00000540669 DIAPH3Q9NSV4 1193 aa12.71□□□□□ -0.37
VPS33A-204ENST00000540669 GPRC5DQ9NZD1 345 aa12.71□□□□□ -0.37
VPS33A-204ENST00000540669 GREB1LQ9C091 1923 aaPredicted RBP12.7□□□□□ -0.38
VPS33A-204ENST00000540669 SHTN1A0MZ66 631 aa12.7□□□□□ -0.38
VPS33A-204ENST00000540669 GLTPD2A6NH11 291 aa12.7□□□□□ -0.38
VPS33A-204ENST00000540669 GPAA1O43292 621 aa12.7□□□□□ -0.38
VPS33A-204ENST00000540669 USP17L8P0C7I0 530 aa12.7□□□□□ -0.38
VPS33A-204ENST00000540669 MCMDC2Q4G0Z9 681 aa12.7□□□□□ -0.38
VPS33A-204ENST00000540669 TEKT1Q969V4 418 aa12.7□□□□□ -0.38
VPS33A-204ENST00000540669 EPB41L4AQ9HCS5 686 aaPredicted RBP12.7□□□□□ -0.38
VPS33A-204ENST00000540669 PCDHAC2Q9Y5I4 1007 aa12.7□□□□□ -0.38
VPS33A-204ENST00000540669 ATRNL1Q5VV63 1379 aa12.69□□□□□ -0.38
VPS33A-204ENST00000540669 ROBO3Q96MS0 1386 aa12.69□□□□□ -0.38
VPS33A-204ENST00000540669 IQCA1LA6NCM1 817 aa12.69□□□□□ -0.38
VPS33A-204ENST00000540669 POTECB2RU33 542 aa12.69□□□□□ -0.38
VPS33A-204ENST00000540669 WDHD1O75717 1129 aaPredicted RBP12.69□□□□□ -0.38
VPS33A-204ENST00000540669 MBD4O95243 580 aa12.69□□□□□ -0.38
VPS33A-204ENST00000540669 SEC24BO95487 1268 aa12.69□□□□□ -0.38
VPS33A-204ENST00000540669 EGFRP00533 1210 aa12.69□□□□□ -0.38
VPS33A-204ENST00000540669 LDHCP07864 332 aa12.69□□□□□ -0.38
VPS33A-204ENST00000540669 CWC27Q6UX04 472 aaKnown RBP12.69□□□□□ -0.38
VPS33A-204ENST00000540669 SLF2Q8IX21 1173 aa12.69□□□□□ -0.38
VPS33A-204ENST00000540669 DSCC1Q9BVC3 393 aa12.69□□□□□ -0.38
VPS33A-204ENST00000540669 DDNO94850 711 aaPredicted RBP12.68□□□□□ -0.38
VPS33A-204ENST00000540669 LMOD1P29536 600 aaPredicted RBP12.68□□□□□ -0.38
VPS33A-204ENST00000540669 BTDP43251 543 aa12.68□□□□□ -0.38
VPS33A-204ENST00000540669 DYNLL1P63167 89 aaKnown RBP12.68□□□□□ -0.38
VPS33A-204ENST00000540669 ALX1Q15699 326 aa12.68□□□□□ -0.38
VPS33A-204ENST00000540669 SPDYE2Q495Y8 402 aa12.68□□□□□ -0.38
VPS33A-204ENST00000540669 VPS53Q5VIR6 699 aa12.68□□□□□ -0.38
VPS33A-204ENST00000540669 FKBP1CQ5VVH2 108 aa12.68□□□□□ -0.38
VPS33A-204ENST00000540669 GIMAP6Q6P9H5 292 aa12.68□□□□□ -0.38
VPS33A-204ENST00000540669 CCDC129Q6ZRS4 1044 aa12.68□□□□□ -0.38
VPS33A-204ENST00000540669 MICALL2Q8IY33 904 aa12.68□□□□□ -0.38
VPS33A-204ENST00000540669 MIGA1Q8NAN2 632 aa12.68□□□□□ -0.38
VPS33A-204ENST00000540669 RUFY2Q8WXA3 655 aa12.68□□□□□ -0.38
VPS33A-204ENST00000540669 MAP4K1Q92918 833 aa12.68□□□□□ -0.38
VPS33A-204ENST00000540669 KCNB2Q92953 911 aa12.68□□□□□ -0.38
VPS33A-204ENST00000540669 IDI2Q9BXS1 227 aa12.68□□□□□ -0.38
VPS33A-204ENST00000540669 CNTNAP1P78357 1384 aa12.68□□□□□ -0.38
VPS33A-204ENST00000540669 MAGEB6P1A0A0J9YX57 407 aa12.67□□□□□ -0.38
VPS33A-204ENST00000540669 GSG1L2A8MUP6 293 aa12.67□□□□□ -0.38
VPS33A-204ENST00000540669 WNT10BO00744 389 aa12.67□□□□□ -0.38
VPS33A-204ENST00000540669 PTH1RQ03431 593 aa12.67□□□□□ -0.38
VPS33A-204ENST00000540669 CFAP100Q494V2 611 aa12.67□□□□□ -0.38
VPS33A-204ENST00000540669 CDC42EP5Q6NZY7 148 aa12.67□□□□□ -0.38
VPS33A-204ENST00000540669 TRPM4Q8TD43 1214 aa12.67□□□□□ -0.38
VPS33A-204ENST00000540669 FBXW7Q969H0 707 aa12.67□□□□□ -0.38
VPS33A-204ENST00000540669 ARMT1Q9H993 441 aa12.67□□□□□ -0.38
VPS33A-204ENST00000540669 MYOZ2Q9NPC6 264 aa12.67□□□□□ -0.38
VPS33A-204ENST00000540669 AATFQ9NY61 560 aaKnown RBP eCLIP12.67□□□□□ -0.38
VPS33A-204ENST00000540669 PGAP2Q9UHJ9 254 aa12.67□□□□□ -0.38
VPS33A-204ENST00000540669 F8W031 263 aaPredicted RBP12.66□□□□□ -0.38
VPS33A-204ENST00000540669 HSPD1P10809 573 aaKnown RBP12.66□□□□□ -0.38
VPS33A-204ENST00000540669 PLCG2P16885 1265 aa12.66□□□□□ -0.38
VPS33A-204ENST00000540669 GNAT2P19087 354 aa12.66□□□□□ -0.38
VPS33A-204ENST00000540669 HIRAP54198 1017 aaPredicted RBP12.66□□□□□ -0.38
VPS33A-204ENST00000540669 CASC1Q6TDU7 716 aa12.66□□□□□ -0.38
VPS33A-204ENST00000540669 SH3RF3Q8TEJ3 882 aaPredicted RBP12.66□□□□□ -0.38
VPS33A-204ENST00000540669 AIDAQ96BJ3 306 aa12.66□□□□□ -0.38
VPS33A-204ENST00000540669 PRMT6Q96LA8 375 aaPredicted RBP12.66□□□□□ -0.38
VPS33A-204ENST00000540669 DDX4Q9NQI0 724 aaKnown RBP12.66□□□□□ -0.38
VPS33A-204ENST00000540669 CNOT7Q9UIV1 285 aaKnown RBP12.66□□□□□ -0.38
VPS33A-204ENST00000540669 HDAC9Q9UKV0 1011 aa12.66□□□□□ -0.38
VPS33A-204ENST00000540669 FLT1P17948 1338 aa12.65□□□□□ -0.38
VPS33A-204ENST00000540669 PITPNM2Q9BZ72 1349 aa12.65□□□□□ -0.38
VPS33A-204ENST00000540669 SSC5DA1L4H1 1573 aa12.65□□□□□ -0.38
VPS33A-204ENST00000540669 SPDYE4A6NLX3 237 aa12.65□□□□□ -0.38
VPS33A-204ENST00000540669 PRKAB2O43741 272 aa12.65□□□□□ -0.38
VPS33A-204ENST00000540669 BAG3O95817 575 aa12.65□□□□□ -0.38
VPS33A-204ENST00000540669 VEGFAP15692 232 aaPredicted RBP12.65□□□□□ -0.38
VPS33A-204ENST00000540669 EPS15P42566 896 aa12.65□□□□□ -0.38
VPS33A-204ENST00000540669 MFAP1P55081 439 aaKnown RBP12.65□□□□□ -0.38
VPS33A-204ENST00000540669 OGFOD1Q8N543 542 aa12.65□□□□□ -0.38
VPS33A-204ENST00000540669 USP26Q9BXU7 913 aa12.65□□□□□ -0.38
VPS33A-204ENST00000540669 NBPF3Q9H094 633 aa12.65□□□□□ -0.38
VPS33A-204ENST00000540669 DCP1AQ9NPI6 582 aaPredicted RBP12.65□□□□□ -0.38
VPS33A-204ENST00000540669 ADARB2Q9NS39 739 aaKnown RBP12.65□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 13.2 ms