RNA–Protein interactions for RNA: ENST00000540304.5

CLIP1-212, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 5

Gene CLIP1, Length 2,554 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-212ENST00000540304 ABCF2Q9UG63 623 aa11.34□□□□□ -0.59
CLIP1-212ENST00000540304 CNPY2Q9Y2B0 182 aa11.34□□□□□ -0.59
CLIP1-212ENST00000540304 PDIA3P30101 505 aaKnown RBP11.33□□□□□ -0.6
CLIP1-212ENST00000540304 PSEN1P49768 467 aa11.33□□□□□ -0.6
CLIP1-212ENST00000540304 MRE11P49959 708 aa11.33□□□□□ -0.6
CLIP1-212ENST00000540304 RBM6P78332 1123 aaKnown RBP11.33□□□□□ -0.6
CLIP1-212ENST00000540304 GRAPQ13588 217 aa11.33□□□□□ -0.6
CLIP1-212ENST00000540304 ZNF772Q68DY9 489 aaPredicted RBP11.33□□□□□ -0.6
CLIP1-212ENST00000540304 PRR5LQ6MZQ0 368 aa11.33□□□□□ -0.6
CLIP1-212ENST00000540304 GAS2L3Q86XJ1 694 aa11.33□□□□□ -0.6
CLIP1-212ENST00000540304 IFNL3Q8IZI9 196 aa11.33□□□□□ -0.6
CLIP1-212ENST00000540304 GRAPLQ8TC17 118 aaPredicted RBP11.33□□□□□ -0.6
CLIP1-212ENST00000540304 EPB41L4AQ9HCS5 686 aaPredicted RBP11.33□□□□□ -0.6
CLIP1-212ENST00000540304 RAI14Q9P0K7 980 aa11.33□□□□□ -0.6
CLIP1-212ENST00000540304 CYP7A1P22680 504 aa11.33□□□□□ -0.6
CLIP1-212ENST00000540304 KLRK1P26718 216 aa11.33□□□□□ -0.6
CLIP1-212ENST00000540304 ANTXR2P58335 489 aa11.33□□□□□ -0.6
CLIP1-212ENST00000540304 HMGN5P82970 282 aaKnown RBP11.33□□□□□ -0.6
CLIP1-212ENST00000540304 CSPP1Q1MSJ5 1256 aa11.33□□□□□ -0.6
CLIP1-212ENST00000540304 ZSCAN23Q3MJ62 389 aa11.33□□□□□ -0.6
CLIP1-212ENST00000540304 LCORLQ8N3X6 602 aa11.33□□□□□ -0.6
CLIP1-212ENST00000540304 NSUN7Q8NE18 718 aaKnown RBP11.33□□□□□ -0.6
CLIP1-212ENST00000540304 NACAP1Q9BZK3 213 aa11.33□□□□□ -0.6
CLIP1-212ENST00000540304 MAST2Q6P0Q8 1798 aa11.33□□□□□ -0.6
CLIP1-212ENST00000540304 GSG1L2A8MUP6 293 aa11.32□□□□□ -0.6
CLIP1-212ENST00000540304 CLGNO14967 610 aa11.32□□□□□ -0.6
CLIP1-212ENST00000540304 HIBADHP31937 336 aaKnown RBP11.32□□□□□ -0.6
CLIP1-212ENST00000540304 ZNF445P59923 1031 aa11.32□□□□□ -0.6
CLIP1-212ENST00000540304 ST5P78524 1137 aa11.32□□□□□ -0.6
CLIP1-212ENST00000540304 TXNRD1Q16881 649 aa11.32□□□□□ -0.6
CLIP1-212ENST00000540304 FAM184AQ8NB25 1140 aa11.32□□□□□ -0.6
CLIP1-212ENST00000540304 KIF3AQ9Y496 699 aa11.32□□□□□ -0.6
CLIP1-212ENST00000540304 SLC4A4Q9Y6R1 1079 aa11.32□□□□□ -0.6
CLIP1-212ENST00000540304 PTPDC1A2A3K4 754 aa11.32□□□□□ -0.6
CLIP1-212ENST00000540304 CTDNEP1O95476 244 aa11.32□□□□□ -0.6
CLIP1-212ENST00000540304 CCT2P78371 535 aaKnown RBP11.32□□□□□ -0.6
CLIP1-212ENST00000540304 SLC51AQ86UW1 340 aa11.32□□□□□ -0.6
CLIP1-212ENST00000540304 MIGA1Q8NAN2 632 aa11.32□□□□□ -0.6
CLIP1-212ENST00000540304 DDX11Q96FC9 970 aa11.32□□□□□ -0.6
CLIP1-212ENST00000540304 GRPEL1Q9HAV7 217 aa11.32□□□□□ -0.6
CLIP1-212ENST00000540304 SERPINB2P05120 415 aa11.31□□□□□ -0.6
CLIP1-212ENST00000540304 DNM1Q05193 864 aaKnown RBP11.31□□□□□ -0.6
CLIP1-212ENST00000540304 RPGRQ92834 1020 aaKnown RBP11.31□□□□□ -0.6
CLIP1-212ENST00000540304 GPHNQ9NQX3 736 aaPredicted RBP11.31□□□□□ -0.6
CLIP1-212ENST00000540304 TFCP2L1Q9NZI6 479 aa11.31□□□□□ -0.6
CLIP1-212ENST00000540304 SALL1Q9NSC2 1324 aa11.31□□□□□ -0.6
CLIP1-212ENST00000540304 CCDC88AQ3V6T2 1871 aa11.31□□□□□ -0.6
CLIP1-212ENST00000540304 MAGEB6P1A0A0J9YX57 407 aa11.31□□□□□ -0.6
CLIP1-212ENST00000540304 KLF18A0A0U1RQI7 1052 aa11.31□□□□□ -0.6
CLIP1-212ENST00000540304 FIBPO43427 364 aa11.31□□□□□ -0.6
CLIP1-212ENST00000540304 PRKAB2O43741 272 aa11.31□□□□□ -0.6
CLIP1-212ENST00000540304 GADD45BO75293 160 aaPredicted RBP11.31□□□□□ -0.6
CLIP1-212ENST00000540304 XRCC6P12956 609 aaKnown RBP eCLIP11.31□□□□□ -0.6
CLIP1-212ENST00000540304 TDO2P48775 406 aa11.31□□□□□ -0.6
CLIP1-212ENST00000540304 ADGRA1Q86SQ6 560 aa11.31□□□□□ -0.6
CLIP1-212ENST00000540304 NCOA5Q9HCD5 579 aaKnown RBP11.31□□□□□ -0.6
CLIP1-212ENST00000540304 TMEM63CQ9P1W3 806 aa11.31□□□□□ -0.6
CLIP1-212ENST00000540304 NEDD4P46934 1319 aa11.31□□□□□ -0.6
CLIP1-212ENST00000540304 IRS2Q9Y4H2 1338 aa11.31□□□□□ -0.6
CLIP1-212ENST00000540304 H3BQV1 296 aa11.3□□□□□ -0.6
CLIP1-212ENST00000540304 ZSCAN20P17040 1043 aaPredicted RBP11.3□□□□□ -0.6
CLIP1-212ENST00000540304 CRY2Q49AN0 593 aa11.3□□□□□ -0.6
CLIP1-212ENST00000540304 IFFO2Q5TF58 517 aa11.3□□□□□ -0.6
CLIP1-212ENST00000540304 NAA16Q6N069 864 aaPredicted RBP11.3□□□□□ -0.6
CLIP1-212ENST00000540304 FERMT3Q86UX7 667 aa11.3□□□□□ -0.6
CLIP1-212ENST00000540304 PROM2Q8N271 834 aa11.3□□□□□ -0.6
CLIP1-212ENST00000540304 SYAP1Q96A49 352 aaPredicted RBP11.3□□□□□ -0.6
CLIP1-212ENST00000540304 CNNM2Q9H8M5 875 aa11.3□□□□□ -0.6
CLIP1-212ENST00000540304 ANGEL1Q9UNK9 670 aaKnown RBP11.3□□□□□ -0.6
CLIP1-212ENST00000540304 LEMD3Q9Y2U8 911 aa11.3□□□□□ -0.6
CLIP1-212ENST00000540304 GOLGA8BA8MQT2 603 aa11.3□□□□□ -0.6
CLIP1-212ENST00000540304 B4E1Z4 1266 aa11.3□□□□□ -0.6
CLIP1-212ENST00000540304 DHX16O60231 1041 aaKnown RBP11.3□□□□□ -0.6
CLIP1-212ENST00000540304 FOSBP53539 338 aa11.3□□□□□ -0.6
CLIP1-212ENST00000540304 UBE2HP62256 183 aa11.3□□□□□ -0.6
CLIP1-212ENST00000540304 KRT85P78386 507 aa11.3□□□□□ -0.6
CLIP1-212ENST00000540304 CYB5R4Q7L1T6 521 aa11.3□□□□□ -0.6
CLIP1-212ENST00000540304 TMEM87BQ96K49 555 aa11.3□□□□□ -0.6
CLIP1-212ENST00000540304 ANKIB1Q9P2G1 1089 aa11.3□□□□□ -0.6
CLIP1-212ENST00000540304 MYH15Q9Y2K3 1946 aa11.3□□□□□ -0.6
CLIP1-212ENST00000540304 KIAA1551Q9HCM1 1747 aa11.3□□□□□ -0.6
CLIP1-212ENST00000540304 XDHP47989 1333 aa11.3□□□□□ -0.6
CLIP1-212ENST00000540304 SH2B2O14492 632 aaPredicted RBP11.29□□□□□ -0.6
CLIP1-212ENST00000540304 CTDSPL2Q05D32 466 aa11.29□□□□□ -0.6
CLIP1-212ENST00000540304 AKNAD1Q5T1N1 836 aa11.29□□□□□ -0.6
CLIP1-212ENST00000540304 FAM173BQ6P4H8 233 aa11.29□□□□□ -0.6
CLIP1-212ENST00000540304 RIOK1Q9BRS2 568 aaKnown RBP11.29□□□□□ -0.6
CLIP1-212ENST00000540304 KRT23Q9C075 422 aa11.29□□□□□ -0.6
CLIP1-212ENST00000540304 PLSCR1O15162 318 aa11.29□□□□□ -0.6
CLIP1-212ENST00000540304 DDR1Q08345 913 aa11.29□□□□□ -0.6
CLIP1-212ENST00000540304 MFSD6Q6ZSS7 791 aa11.29□□□□□ -0.6
CLIP1-212ENST00000540304 TXNRD3Q86VQ6 643 aa11.29□□□□□ -0.6
CLIP1-212ENST00000540304 RAB11FIP4Q86YS3 637 aa11.29□□□□□ -0.6
CLIP1-212ENST00000540304 STAG1Q8WVM7 1258 aa11.29□□□□□ -0.6
CLIP1-212ENST00000540304 RBM17Q96I25 401 aaKnown RBP11.29□□□□□ -0.6
CLIP1-212ENST00000540304 HPS5Q9UPZ3 1129 aa11.29□□□□□ -0.6
CLIP1-212ENST00000540304 POLRMTO00411 1230 aaKnown RBP11.28□□□□□ -0.6
CLIP1-212ENST00000540304 RESTQ13127 1097 aa11.28□□□□□ -0.6
CLIP1-212ENST00000540304 NSUN4Q96CB9 384 aaKnown RBP11.28□□□□□ -0.6
CLIP1-212ENST00000540304 ZSCAN16Q9H4T2 348 aaPredicted RBP11.28□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 13.5 ms