RNA–Protein interactions for RNA: ENST00000539950.1

VPS13A-213, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 3

Gene VPS13A, Length 390 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-213ENST00000539950 BCO2Q9BYV7 579 aa6.93□□□□□ -1.3
VPS13A-213ENST00000539950 ZC3H12CQ9C0D7 883 aaKnown RBP6.93□□□□□ -1.3
VPS13A-213ENST00000539950 ACSS3Q9H6R3 686 aa6.93□□□□□ -1.3
VPS13A-213ENST00000539950 NLRP2Q9NX02 1062 aa6.93□□□□□ -1.3
VPS13A-213ENST00000539950 KIR2DP1A0A0G2JNF4 349 aaPredicted RBP6.92□□□□□ -1.3
VPS13A-213ENST00000539950 PNMA6FA0A0J9YX94 578 aa6.92□□□□□ -1.3
VPS13A-213ENST00000539950 FAM170BA6NMN3 283 aa6.92□□□□□ -1.3
VPS13A-213ENST00000539950 DYNC1LI2O43237 492 aaPredicted RBP6.92□□□□□ -1.3
VPS13A-213ENST00000539950 TREHO43280 583 aa6.92□□□□□ -1.3
VPS13A-213ENST00000539950 FOSL1P15407 271 aa6.92□□□□□ -1.3
VPS13A-213ENST00000539950 LIG1P18858 919 aa6.92□□□□□ -1.3
VPS13A-213ENST00000539950 MSMPQ1L6U9 139 aa6.92□□□□□ -1.3
VPS13A-213ENST00000539950 MCTP1Q6DN14 999 aa6.92□□□□□ -1.3
VPS13A-213ENST00000539950 ZNF862O60290 1169 aa6.91□□□□□ -1.3
VPS13A-213ENST00000539950 PLCB3Q01970 1234 aa6.91□□□□□ -1.3
VPS13A-213ENST00000539950 MAP7Q14244 749 aa6.91□□□□□ -1.3
VPS13A-213ENST00000539950 ENOX2Q16206 610 aaKnown RBP6.91□□□□□ -1.3
VPS13A-213ENST00000539950 CPSF6Q16630 551 aaKnown RBP eCLIP6.91□□□□□ -1.3
VPS13A-213ENST00000539950 LARP7Q4G0J3 582 aaKnown RBP eCLIP6.91□□□□□ -1.3
VPS13A-213ENST00000539950 NXPE4Q6UWF7 544 aa6.91□□□□□ -1.3
VPS13A-213ENST00000539950 SEZ6L2Q6UXD5 910 aa6.91□□□□□ -1.3
VPS13A-213ENST00000539950 LGR6Q9HBX8 967 aa6.91□□□□□ -1.3
VPS13A-213ENST00000539950 GPN3Q9UHW5 284 aaPredicted RBP6.91□□□□□ -1.3
VPS13A-213ENST00000539950 TMPRSS2O15393 492 aa6.9□□□□□ -1.3
VPS13A-213ENST00000539950 WNT11O96014 354 aa6.9□□□□□ -1.3
VPS13A-213ENST00000539950 GSTP1P09211 210 aaKnown RBP6.9□□□□□ -1.3
VPS13A-213ENST00000539950 PDZD3Q86UT5 571 aa6.9□□□□□ -1.3
VPS13A-213ENST00000539950 STK35Q8TDR2 534 aa6.9□□□□□ -1.3
VPS13A-213ENST00000539950 METTL22Q9BUU2 404 aaPredicted RBP6.9□□□□□ -1.3
VPS13A-213ENST00000539950 C1GALT1Q9NS00 363 aa6.9□□□□□ -1.3
VPS13A-213ENST00000539950 TMEM39AQ9NV64 488 aa6.9□□□□□ -1.3
VPS13A-213ENST00000539950 DAGLAQ9Y4D2 1042 aa6.9□□□□□ -1.3
VPS13A-213ENST00000539950 SYNGAP1Q96PV0 1343 aa6.9□□□□□ -1.3
VPS13A-213ENST00000539950 COL17A1Q9UMD9 1497 aaPredicted RBP6.9□□□□□ -1.31
VPS13A-213ENST00000539950 CYP26A1O43174 497 aa6.89□□□□□ -1.31
VPS13A-213ENST00000539950 IRAK1P51617 712 aa6.89□□□□□ -1.31
VPS13A-213ENST00000539950 ZNF765Q7L2R6 523 aa6.89□□□□□ -1.31
VPS13A-213ENST00000539950 SETDB2Q96T68 719 aa6.89□□□□□ -1.31
VPS13A-213ENST00000539950 PPP4R2Q9NY27 417 aa6.89□□□□□ -1.31
VPS13A-213ENST00000539950 CRIM1Q9NZV1 1036 aa6.89□□□□□ -1.31
VPS13A-213ENST00000539950 AKAP2Q9Y2D5 859 aa6.89□□□□□ -1.31
VPS13A-213ENST00000539950 PCDHGC5Q9Y5F6 944 aa6.89□□□□□ -1.31
VPS13A-213ENST00000539950 IVNS1ABPQ9Y6Y0 642 aa6.89□□□□□ -1.31
VPS13A-213ENST00000539950 XRCC5P13010 732 aaKnown RBP6.88□□□□□ -1.31
VPS13A-213ENST00000539950 PPP2R3AQ06190 1150 aa6.88□□□□□ -1.31
VPS13A-213ENST00000539950 C3orf58Q8NDZ4 430 aa6.88□□□□□ -1.31
VPS13A-213ENST00000539950 FANCD2OSQ96PS1 177 aa6.88□□□□□ -1.31
VPS13A-213ENST00000539950 CCDC39Q9UFE4 941 aa6.88□□□□□ -1.31
VPS13A-213ENST00000539950 MAPK8P45983 427 aa6.87□□□□□ -1.31
VPS13A-213ENST00000539950 ID3Q02535 119 aa6.87□□□□□ -1.31
VPS13A-213ENST00000539950 KIF4BQ2VIQ3 1234 aa6.87□□□□□ -1.31
VPS13A-213ENST00000539950 DUSP27Q5VZP5 1158 aa6.87□□□□□ -1.31
VPS13A-213ENST00000539950 NFXL1Q6ZNB6 911 aa6.87□□□□□ -1.31
VPS13A-213ENST00000539950 SULF2Q8IWU5 870 aa6.87□□□□□ -1.31
VPS13A-213ENST00000539950 KCNB2Q92953 911 aa6.87□□□□□ -1.31
VPS13A-213ENST00000539950 LRRC4CQ9HCJ2 640 aa6.87□□□□□ -1.31
VPS13A-213ENST00000539950 DISC1Q9NRI5 854 aa6.87□□□□□ -1.31
VPS13A-213ENST00000539950 KRT82Q9NSB4 513 aa6.87□□□□□ -1.31
VPS13A-213ENST00000539950 PRNPP04156 253 aa6.86□□□□□ -1.31
VPS13A-213ENST00000539950 SLFN14P0C7P3 912 aa6.86□□□□□ -1.31
VPS13A-213ENST00000539950 FMR1Q06787 632 aaKnown RBP eCLIP6.86□□□□□ -1.31
VPS13A-213ENST00000539950 ZC3H7BQ9UGR2 993 aaKnown RBP6.86□□□□□ -1.31
VPS13A-213ENST00000539950 WWC3Q9ULE0 1092 aa6.86□□□□□ -1.31
VPS13A-213ENST00000539950 TAL1P17542 331 aaPredicted RBP6.85□□□□□ -1.31
VPS13A-213ENST00000539950 KCNA1Q09470 495 aa6.85□□□□□ -1.31
VPS13A-213ENST00000539950 CDK5R2Q13319 367 aa6.85□□□□□ -1.31
VPS13A-213ENST00000539950 OGFOD3Q6PK18 319 aa6.85□□□□□ -1.31
VPS13A-213ENST00000539950 ABI1Q8IZP0 508 aa6.85□□□□□ -1.31
VPS13A-213ENST00000539950 ASB16Q96NS5 453 aa6.85□□□□□ -1.31
VPS13A-213ENST00000539950 OSBPL7Q9BZF2 842 aa6.85□□□□□ -1.31
VPS13A-213ENST00000539950 ATXN3LQ9H3M9 355 aa6.85□□□□□ -1.31
VPS13A-213ENST00000539950 PIDD1Q9HB75 910 aa6.85□□□□□ -1.31
VPS13A-213ENST00000539950 ADGRE2Q9UHX3 823 aa6.85□□□□□ -1.31
VPS13A-213ENST00000539950 ANGEL1Q9UNK9 670 aaKnown RBP6.85□□□□□ -1.31
VPS13A-213ENST00000539950 HCLS1P14317 486 aaPredicted RBP6.84□□□□□ -1.31
VPS13A-213ENST00000539950 NME2P22392 152 aa6.84□□□□□ -1.31
VPS13A-213ENST00000539950 ARNTP27540 789 aa6.84□□□□□ -1.31
VPS13A-213ENST00000539950 CYP27A1Q02318 531 aa6.84□□□□□ -1.31
VPS13A-213ENST00000539950 TTLL4Q14679 1199 aa6.84□□□□□ -1.31
VPS13A-213ENST00000539950 MAP1SQ66K74 1059 aaPredicted RBP6.84□□□□□ -1.31
VPS13A-213ENST00000539950 MPRIPQ6WCQ1 1025 aa6.84□□□□□ -1.31
VPS13A-213ENST00000539950 TPTE2Q6XPS3 522 aa6.84□□□□□ -1.31
VPS13A-213ENST00000539950 ZSCAN29Q8IWY8 852 aaPredicted RBP6.84□□□□□ -1.31
VPS13A-213ENST00000539950 NECAB3Q96P71 396 aaPredicted RBP6.84□□□□□ -1.31
VPS13A-213ENST00000539950 BSDC1Q9NW68 430 aaPredicted RBP6.84□□□□□ -1.31
VPS13A-213ENST00000539950 FBXO24O75426 580 aa6.83□□□□□ -1.32
VPS13A-213ENST00000539950 PAGE1O75459 146 aa6.83□□□□□ -1.32
VPS13A-213ENST00000539950 GSTT1P30711 240 aa6.83□□□□□ -1.32
VPS13A-213ENST00000539950 ZNF252P-AS1Q0IIN9 211 aa6.83□□□□□ -1.32
VPS13A-213ENST00000539950 VSIG10LQ86VR7 867 aa6.83□□□□□ -1.32
VPS13A-213ENST00000539950 SMYD4Q8IYR2 804 aaPredicted RBP6.83□□□□□ -1.32
VPS13A-213ENST00000539950 FBF1Q8TES7 1133 aa6.83□□□□□ -1.32
VPS13A-213ENST00000539950 KRTAP4-12Q9BQ66 201 aa6.83□□□□□ -1.32
VPS13A-213ENST00000539950 ENC1O14682 589 aa6.82□□□□□ -1.32
VPS13A-213ENST00000539950 RNGTTO60942 597 aaKnown RBP6.82□□□□□ -1.32
VPS13A-213ENST00000539950 NEFMP07197 916 aa6.82□□□□□ -1.32
VPS13A-213ENST00000539950 FAM87AP0C7U9 286 aa6.82□□□□□ -1.32
VPS13A-213ENST00000539950 ZC3H12AQ5D1E8 599 aaKnown RBP6.82□□□□□ -1.32
VPS13A-213ENST00000539950 GRIN3AQ8TCU5 1115 aa6.82□□□□□ -1.32
VPS13A-213ENST00000539950 GPBAR1Q8TDU6 330 aa6.82□□□□□ -1.32
Retrieved 100 of 20,778 RNA–protein pairs in 18.1 ms