RNA–Protein interactions for RNA: ENST00000537408.1

CLSTN3-207, Transcript of calsyntenin 3, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CLSTN3, Length 4,296 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-207ENST00000537408 FAXDC2Q96IV6 333 aa12.41□□□□□ -0.42
CLSTN3-207ENST00000537408 FERMT3Q86UX7 667 aa12.41□□□□□ -0.42
CLSTN3-207ENST00000537408 SPATS2Q86XZ4 545 aaKnown RBP12.41□□□□□ -0.42
CLSTN3-207ENST00000537408 UPF1Q92900 1129 aaKnown RBP eCLIP12.41□□□□□ -0.424e-13■■■■■ 51.6
CLSTN3-207ENST00000537408 TRIM35Q9UPQ4 493 aa12.41□□□□□ -0.42
CLSTN3-207ENST00000537408 ARHGAP25P42331 645 aa12.4□□□□□ -0.42
CLSTN3-207ENST00000537408 CCDC50Q8IVM0 306 aa12.4□□□□□ -0.42
CLSTN3-207ENST00000537408 ADGRB1O14514 1584 aa12.4□□□□□ -0.42
CLSTN3-207ENST00000537408 CBFA2T2O43439 604 aa12.4□□□□□ -0.42
CLSTN3-207ENST00000537408 NAA25Q14CX7 972 aa12.4□□□□□ -0.42
CLSTN3-207ENST00000537408 SETDB2Q96T68 719 aa12.4□□□□□ -0.42
CLSTN3-207ENST00000537408 OSBPL3Q9H4L5 887 aa12.4□□□□□ -0.42
CLSTN3-207ENST00000537408 LOC102724428A0A0B4J2F2 783 aa12.4□□□□□ -0.42
CLSTN3-207ENST00000537408 PHKG2P15735 406 aa12.4□□□□□ -0.42
CLSTN3-207ENST00000537408 CHMLP26374 656 aa12.4□□□□□ -0.42
CLSTN3-207ENST00000537408 SIK1P57059 783 aa12.4□□□□□ -0.42
CLSTN3-207ENST00000537408 PREPLQ4J6C6 727 aaPredicted RBP12.4□□□□□ -0.42
CLSTN3-207ENST00000537408 C11orf57Q6ZUT1 292 aaPredicted RBP12.4□□□□□ -0.42
CLSTN3-207ENST00000537408 ZNF526Q8TF50 670 aaPredicted RBP12.4□□□□□ -0.42
CLSTN3-207ENST00000537408 LRRCC1Q9C099 1032 aa12.4□□□□□ -0.42
CLSTN3-207ENST00000537408 CENPHQ9H3R5 247 aa12.4□□□□□ -0.42
CLSTN3-207ENST00000537408 GNAI3P08754 354 aa12.4□□□□□ -0.43
CLSTN3-207ENST00000537408 GBP2P32456 591 aaPredicted RBP12.4□□□□□ -0.43
CLSTN3-207ENST00000537408 EZH2Q15910 746 aaKnown RBP12.4□□□□□ -0.43
CLSTN3-207ENST00000537408 KCNV1Q6PIU1 500 aa12.4□□□□□ -0.43
CLSTN3-207ENST00000537408 PRPF38AQ8NAV1 312 aaKnown RBP12.4□□□□□ -0.43
CLSTN3-207ENST00000537408 MRFAP1Q9Y605 127 aa12.4□□□□□ -0.43
CLSTN3-207ENST00000537408 RNF40O75150 1001 aa12.39□□□□□ -0.43
CLSTN3-207ENST00000537408 MYL6BP14649 208 aa12.39□□□□□ -0.43
CLSTN3-207ENST00000537408 HSPA4P34932 840 aa12.39□□□□□ -0.43
CLSTN3-207ENST00000537408 CEP85LQ5SZL2 805 aa12.39□□□□□ -0.43
CLSTN3-207ENST00000537408 MAP3K9P80192 1104 aa12.39□□□□□ -0.43
CLSTN3-207ENST00000537408 ICA1Q05084 483 aa12.39□□□□□ -0.43
CLSTN3-207ENST00000537408 FAM76AQ8TAV0 307 aa12.39□□□□□ -0.43
CLSTN3-207ENST00000537408 RNMTO43148 476 aaKnown RBP12.39□□□□□ -0.43
CLSTN3-207ENST00000537408 NR1I2O75469 434 aa12.39□□□□□ -0.43
CLSTN3-207ENST00000537408 NEFHP12036 1026 aa12.39□□□□□ -0.43
CLSTN3-207ENST00000537408 MCM3P25205 808 aa12.39□□□□□ -0.43
CLSTN3-207ENST00000537408 LEO1Q8WVC0 666 aaPredicted RBP12.39□□□□□ -0.43
CLSTN3-207ENST00000537408 GPATCH3Q96I76 525 aa12.39□□□□□ -0.43
CLSTN3-207ENST00000537408 TUBB2AQ13885 445 aa12.38□□□□□ -0.43
CLSTN3-207ENST00000537408 CASP8Q14790 479 aa12.38□□□□□ -0.43
CLSTN3-207ENST00000537408 BEND6Q5SZJ8 279 aaPredicted RBP12.38□□□□□ -0.43
CLSTN3-207ENST00000537408 SLC16A10Q8TF71 515 aa12.38□□□□□ -0.43
CLSTN3-207ENST00000537408 CCDC12Q8WUD4 166 aaPredicted RBP12.38□□□□□ -0.43
CLSTN3-207ENST00000537408 TUBB2BQ9BVA1 445 aa12.38□□□□□ -0.43
CLSTN3-207ENST00000537408 IFNKQ9P0W0 207 aa12.38□□□□□ -0.43
CLSTN3-207ENST00000537408 CEP57Q86XR8 500 aa12.38□□□□□ -0.43
CLSTN3-207ENST00000537408 IL17RAQ96F46 866 aa12.38□□□□□ -0.43
CLSTN3-207ENST00000537408 CFAP45Q9UL16 551 aa12.38□□□□□ -0.43
CLSTN3-207ENST00000537408 KIAA1210Q9ULL0 1709 aa12.38□□□□□ -0.43
CLSTN3-207ENST00000537408 SHPRHQ149N8 1683 aa12.38□□□□□ -0.43
CLSTN3-207ENST00000537408 WDHD1O75717 1129 aaPredicted RBP12.38□□□□□ -0.43
CLSTN3-207ENST00000537408 ZBTB7AO95365 584 aa12.38□□□□□ -0.43
CLSTN3-207ENST00000537408 UBTFL1P0CB47 393 aaPredicted RBP12.38□□□□□ -0.43
CLSTN3-207ENST00000537408 PDCD2Q16342 344 aaPredicted RBP12.38□□□□□ -0.43
CLSTN3-207ENST00000537408 SRGAP1Q7Z6B7 1085 aa12.38□□□□□ -0.43
CLSTN3-207ENST00000537408 ZNF513Q8N8E2 541 aaPredicted RBP12.38□□□□□ -0.43
CLSTN3-207ENST00000537408 RSRC1Q96IZ7 334 aaKnown RBP12.38□□□□□ -0.43
CLSTN3-207ENST00000537408 ZSWIM4Q9H7M6 989 aa12.38□□□□□ -0.43
CLSTN3-207ENST00000537408 TFIP11Q9UBB9 837 aaKnown RBP12.38□□□□□ -0.43
CLSTN3-207ENST00000537408 SLC39A6Q13433 755 aa12.37□□□□□ -0.43
CLSTN3-207ENST00000537408 KIF4BQ2VIQ3 1234 aa12.37□□□□□ -0.43
CLSTN3-207ENST00000537408 ARMCX5Q6P1M9 558 aa12.37□□□□□ -0.43
CLSTN3-207ENST00000537408 RPGRQ92834 1020 aaKnown RBP12.37□□□□□ -0.43
CLSTN3-207ENST00000537408 GOLGA6L7A0A1B0GV03 622 aa12.37□□□□□ -0.43
CLSTN3-207ENST00000537408 N4BP1O75113 896 aaKnown RBP12.37□□□□□ -0.43
CLSTN3-207ENST00000537408 SETSIPP0DME0 302 aa12.37□□□□□ -0.43
CLSTN3-207ENST00000537408 MRPL12P52815 198 aaKnown RBP12.37□□□□□ -0.43
CLSTN3-207ENST00000537408 CEP85Q6P2H3 762 aa12.37□□□□□ -0.43
CLSTN3-207ENST00000537408 AMOTL1Q8IY63 956 aa12.37□□□□□ -0.43
CLSTN3-207ENST00000537408 ZKSCAN4Q969J2 545 aaPredicted RBP12.37□□□□□ -0.43
CLSTN3-207ENST00000537408 IBSPP21815 317 aaPredicted RBP12.37□□□□□ -0.43
CLSTN3-207ENST00000537408 RUFY3Q7L099 469 aa12.37□□□□□ -0.43
CLSTN3-207ENST00000537408 PSMD1Q99460 953 aa12.37□□□□□ -0.43
CLSTN3-207ENST00000537408 ABCB6Q9NP58 842 aa12.37□□□□□ -0.43
CLSTN3-207ENST00000537408 QRICH2Q9H0J4 1663 aa12.37□□□□□ -0.43
CLSTN3-207ENST00000537408 MAP3K5Q99683 1374 aa12.37□□□□□ -0.43
CLSTN3-207ENST00000537408 MTHFSDQ2M296 383 aaKnown RBP12.37□□□□□ -0.43
CLSTN3-207ENST00000537408 MARCH10Q8NA82 808 aaPredicted RBP12.37□□□□□ -0.43
CLSTN3-207ENST00000537408 CRACR2AQ9BSW2 395 aa12.37□□□□□ -0.43
CLSTN3-207ENST00000537408 XPO4Q9C0E2 1151 aaKnown RBP12.37□□□□□ -0.43
CLSTN3-207ENST00000537408 CYP46A1Q9Y6A2 500 aa12.37□□□□□ -0.43
CLSTN3-207ENST00000537408 AHDC1Q5TGY3 1603 aaPredicted RBP12.37□□□□□ -0.43
CLSTN3-207ENST00000537408 XRN1Q8IZH2 1706 aaKnown RBP12.36□□□□□ -0.43
CLSTN3-207ENST00000537408 USP5P45974 858 aa12.36□□□□□ -0.43
CLSTN3-207ENST00000537408 FBXW7Q969H0 707 aa12.36□□□□□ -0.43
CLSTN3-207ENST00000537408 A6NNZ2 444 aa12.36□□□□□ -0.43
CLSTN3-207ENST00000537408 ARHGAP6O43182 974 aa12.36□□□□□ -0.43
CLSTN3-207ENST00000537408 TUBB8Q3ZCM7 444 aa12.36□□□□□ -0.43
CLSTN3-207ENST00000537408 TRIM65Q6PJ69 517 aa12.36□□□□□ -0.43
CLSTN3-207ENST00000537408 BAG1Q99933 345 aaPredicted RBP12.36□□□□□ -0.43
CLSTN3-207ENST00000537408 LARP6Q9BRS8 491 aaKnown RBP12.36□□□□□ -0.43
CLSTN3-207ENST00000537408 SUDS3Q9H7L9 328 aaPredicted RBP12.36□□□□□ -0.43
CLSTN3-207ENST00000537408 PPP1R42Q7Z4L9 355 aa12.36□□□□□ -0.43
CLSTN3-207ENST00000537408 RPUSD2Q8IZ73 545 aaKnown RBP12.36□□□□□ -0.43
CLSTN3-207ENST00000537408 ITSN1Q15811 1721 aa12.35□□□□□ -0.43
CLSTN3-207ENST00000537408 VAMP4O75379 141 aa12.35□□□□□ -0.43
CLSTN3-207ENST00000537408 TPTE2Q6XPS3 522 aa12.35□□□□□ -0.43
CLSTN3-207ENST00000537408 BCAS4Q8TDM0 211 aa12.35□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 92.6 ms