RNA–Protein interactions for RNA: ENST00000537002.5

PTPRD-213, Transcript of protein tyrosine phosphatase, receptor type D, humanhuman

TSL 1 (best) BASIC

Gene PTPRD, Length 8,224 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRD-213ENST00000537002 PPP1R42Q7Z4L9 355 aa6.1□□□□□ -1.43
PTPRD-213ENST00000537002 SRGAP1Q7Z6B7 1085 aa6.1□□□□□ -1.43
PTPRD-213ENST00000537002 KCNB2Q92953 911 aa6.1□□□□□ -1.43
PTPRD-213ENST00000537002 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP6.1□□□□□ -1.43
PTPRD-213ENST00000537002 TTF2Q9UNY4 1162 aaKnown RBP6.1□□□□□ -1.43
PTPRD-213ENST00000537002 YTHDC2Q9H6S0 1430 aaKnown RBP6.1□□□□□ -1.43
PTPRD-213ENST00000537002 RRAGBQ5VZM2 374 aa6.1□□□□□ -1.43
PTPRD-213ENST00000537002 CACNA2D4Q7Z3S7 1137 aa6.1□□□□□ -1.43
PTPRD-213ENST00000537002 MSANTD4Q8NCY6 345 aa6.1□□□□□ -1.43
PTPRD-213ENST00000537002 A0A1B0GVL5 298 aa6.09□□□□□ -1.43
PTPRD-213ENST00000537002 HPDP32754 393 aaPredicted RBP6.09□□□□□ -1.43
PTPRD-213ENST00000537002 AP1ARQ63HQ0 302 aa6.09□□□□□ -1.43
PTPRD-213ENST00000537002 SIRT2Q8IXJ6 389 aa6.09□□□□□ -1.43
PTPRD-213ENST00000537002 AMOTL1Q8IY63 956 aa6.09□□□□□ -1.43
PTPRD-213ENST00000537002 SUFUQ9UMX1 484 aa6.09□□□□□ -1.43
PTPRD-213ENST00000537002 AFMP43652 599 aa6.09□□□□□ -1.43
PTPRD-213ENST00000537002 MAP3K9P80192 1104 aa6.09□□□□□ -1.43
PTPRD-213ENST00000537002 FANCCQ00597 558 aa6.09□□□□□ -1.43
PTPRD-213ENST00000537002 FLIIQ13045 1269 aa6.09□□□□□ -1.43
PTPRD-213ENST00000537002 NMIQ13287 307 aaPredicted RBP6.09□□□□□ -1.43
PTPRD-213ENST00000537002 UBAC1Q9BSL1 405 aa6.09□□□□□ -1.43
PTPRD-213ENST00000537002 DDX24Q9GZR7 859 aaKnown RBP eCLIP6.09□□□□□ -1.43
PTPRD-213ENST00000537002 ACTR5Q9H9F9 607 aaPredicted RBP6.09□□□□□ -1.43
PTPRD-213ENST00000537002 HOMER3Q9NSC5 361 aa6.09□□□□□ -1.43
PTPRD-213ENST00000537002 ZNF446Q9NWS9 450 aa6.09□□□□□ -1.43
PTPRD-213ENST00000537002 ANKRD26Q9UPS8 1709 aa6.09□□□□□ -1.43
PTPRD-213ENST00000537002 ARID4AP29374 1257 aaPredicted RBP6.09□□□□□ -1.43
PTPRD-213ENST00000537002 STX17P56962 302 aa6.09□□□□□ -1.43
PTPRD-213ENST00000537002 SLC8A3P57103 927 aa6.09□□□□□ -1.43
PTPRD-213ENST00000537002 TAF7Q15545 349 aaPredicted RBP6.09□□□□□ -1.43
PTPRD-213ENST00000537002 CCDC129Q6ZRS4 1044 aa6.09□□□□□ -1.43
PTPRD-213ENST00000537002 CDC37L1Q7L3B6 337 aa6.09□□□□□ -1.43
PTPRD-213ENST00000537002 TTC6Q86TZ1 520 aa6.09□□□□□ -1.43
PTPRD-213ENST00000537002 MAGEC3Q8TD91 643 aa6.09□□□□□ -1.43
PTPRD-213ENST00000537002 NGLY1Q96IV0 654 aa6.09□□□□□ -1.43
PTPRD-213ENST00000537002 FUT8Q9BYC5 575 aa6.09□□□□□ -1.43
PTPRD-213ENST00000537002 TRIM6Q9C030 488 aaPredicted RBP6.09□□□□□ -1.43
PTPRD-213ENST00000537002 SNX14Q9Y5W7 946 aa6.09□□□□□ -1.43
PTPRD-213ENST00000537002 MYL6BP14649 208 aa6.09□□□□□ -1.43
PTPRD-213ENST00000537002 RSRC2Q7L4I2 434 aaKnown RBP6.09□□□□□ -1.43
PTPRD-213ENST00000537002 CCHCR1Q8TD31 782 aa6.09□□□□□ -1.43
PTPRD-213ENST00000537002 SH3GL3Q99963 347 aa6.09□□□□□ -1.43
PTPRD-213ENST00000537002 COL3A1P02461 1466 aaPredicted RBP6.09□□□□□ -1.43
PTPRD-213ENST00000537002 PXDNLA1KZ92 1463 aa6.09□□□□□ -1.43
PTPRD-213ENST00000537002 GOLGA8AA7E2F4 631 aa6.09□□□□□ -1.43
PTPRD-213ENST00000537002 GNGT1P63211 74 aa6.09□□□□□ -1.43
PTPRD-213ENST00000537002 RUFY3Q7L099 469 aa6.09□□□□□ -1.43
PTPRD-213ENST00000537002 CPLX4Q7Z7G2 160 aa6.09□□□□□ -1.43
PTPRD-213ENST00000537002 CCDC57Q2TAC2 916 aa6.09□□□□□ -1.44
PTPRD-213ENST00000537002 NBPF6Q5VWK0 638 aa6.09□□□□□ -1.44
PTPRD-213ENST00000537002 NBPF5PQ86XG9 351 aaPredicted RBP6.09□□□□□ -1.44
PTPRD-213ENST00000537002 CNKSR2Q8WXI2 1034 aa6.09□□□□□ -1.44
PTPRD-213ENST00000537002 NBPF4Q96M43 638 aa6.09□□□□□ -1.44
PTPRD-213ENST00000537002 NAPGQ99747 312 aaPredicted RBP6.09□□□□□ -1.44
PTPRD-213ENST00000537002 ZSWIM6Q9HCJ5 1215 aa6.09□□□□□ -1.44
PTPRD-213ENST00000537002 CDC23Q9UJX2 597 aa6.09□□□□□ -1.44
PTPRD-213ENST00000537002 TARSL2A2RTX5 802 aaKnown RBP6.08□□□□□ -1.44
PTPRD-213ENST00000537002 ANKRD65E5RJM6 399 aa6.08□□□□□ -1.44
PTPRD-213ENST00000537002 SPTLC2O15270 562 aa6.08□□□□□ -1.44
PTPRD-213ENST00000537002 KIF5BP33176 963 aa6.08□□□□□ -1.44
PTPRD-213ENST00000537002 ATP8B2P98198 1209 aa6.08□□□□□ -1.44
PTPRD-213ENST00000537002 WDR93Q6P2C0 686 aa6.08□□□□□ -1.44
PTPRD-213ENST00000537002 TEX11Q8IYF3 940 aa6.08□□□□□ -1.44
PTPRD-213ENST00000537002 NEXMIFQ5QGS0 1516 aa6.08□□□□□ -1.44
PTPRD-213ENST00000537002 LMTK2Q8IWU2 1503 aa6.08□□□□□ -1.44
PTPRD-213ENST00000537002 TTC36A6NLP5 189 aa6.08□□□□□ -1.44
PTPRD-213ENST00000537002 MPHOSPH10O00566 681 aaKnown RBP6.08□□□□□ -1.44
PTPRD-213ENST00000537002 MTIF2P46199 727 aaKnown RBP6.08□□□□□ -1.44
PTPRD-213ENST00000537002 AARSP49588 968 aaKnown RBP eCLIP6.08□□□□□ -1.44
PTPRD-213ENST00000537002 HAND2P61296 217 aa6.08□□□□□ -1.44
PTPRD-213ENST00000537002 CCDC6Q16204 474 aa6.08□□□□□ -1.44
PTPRD-213ENST00000537002 ANKRD24Q8TF21 1146 aa6.08□□□□□ -1.44
PTPRD-213ENST00000537002 DEPDC5O75140 1603 aa6.08□□□□□ -1.44
PTPRD-213ENST00000537002 RFX7Q2KHR2 1363 aa6.08□□□□□ -1.44
PTPRD-213ENST00000537002 KCNA6P17658 529 aa6.08□□□□□ -1.44
PTPRD-213ENST00000537002 PEX19P40855 299 aa6.08□□□□□ -1.44
PTPRD-213ENST00000537002 CFAP58Q5T655 872 aa6.08□□□□□ -1.44
PTPRD-213ENST00000537002 TTC19Q6DKK2 380 aaPredicted RBP6.08□□□□□ -1.44
PTPRD-213ENST00000537002 VPS37DQ86XT2 251 aa6.08□□□□□ -1.44
PTPRD-213ENST00000537002 CTAGE1Q96RT6 745 aa6.08□□□□□ -1.44
PTPRD-213ENST00000537002 XPO4Q9C0E2 1151 aaKnown RBP6.08□□□□□ -1.44
PTPRD-213ENST00000537002 MRFAP1Q9Y605 127 aa6.08□□□□□ -1.44
PTPRD-213ENST00000537002 RIMS2Q9UQ26 1411 aa6.08□□□□□ -1.44
PTPRD-213ENST00000537002 ZCCHC11Q5TAX3 1644 aaKnown RBP6.08□□□□□ -1.44
PTPRD-213ENST00000537002 ADGRF5Q8IZF2 1346 aa6.08□□□□□ -1.44
PTPRD-213ENST00000537002 SMIM23A6NLE4 172 aa6.08□□□□□ -1.44
PTPRD-213ENST00000537002 GCFC2P16383 781 aaKnown RBP6.08□□□□□ -1.44
PTPRD-213ENST00000537002 MYL5Q02045 173 aa6.08□□□□□ -1.44
PTPRD-213ENST00000537002 ELOA2Q8IYF1 753 aaPredicted RBP6.08□□□□□ -1.44
PTPRD-213ENST00000537002 ST7Q9NRC1 585 aa6.08□□□□□ -1.44
PTPRD-213ENST00000537002 RCOR1Q9UKL0 485 aa6.08□□□□□ -1.44
PTPRD-213ENST00000537002 PTPDC1A2A3K4 754 aa6.08□□□□□ -1.44
PTPRD-213ENST00000537002 NSRP1Q9H0G5 558 aaKnown RBP6.08□□□□□ -1.44
PTPRD-213ENST00000537002 PALD1Q9ULE6 856 aa6.08□□□□□ -1.44
PTPRD-213ENST00000537002 MACROD2A1Z1Q3 448 aa6.08□□□□□ -1.44
PTPRD-213ENST00000537002 GOLGA6BA6NDN3 693 aa6.08□□□□□ -1.44
PTPRD-213ENST00000537002 RWDD2BP57060 319 aa6.08□□□□□ -1.44
PTPRD-213ENST00000537002 CHD2O14647 1828 aaKnown RBP6.08□□□□□ -1.44
PTPRD-213ENST00000537002 TCHHQ07283 1943 aa6.08□□□□□ -1.44
PTPRD-213ENST00000537002 FBLN1P23142 703 aa6.08□□□□□ -1.44
Retrieved 100 of 20,778 RNA–protein pairs in 23.3 ms