RNA–Protein interactions for RNA: ENST00000536429.1

PRKDC-206, Transcript of protein kinase, DNA-activated, catalytic subunit, humanhuman

TSL 3

Gene PRKDC, Length 659 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRKDC-206ENST00000536429 BCL11AQ9H165 835 aa16.16■□□□□ 0.18
PRKDC-206ENST00000536429 NDUFB9Q9Y6M9 179 aa16.16■□□□□ 0.18
PRKDC-206ENST00000536429 ECM29Q5VYK3 1845 aa16.15■□□□□ 0.18
PRKDC-206ENST00000536429 USP2O75604 605 aaPredicted RBP16.15■□□□□ 0.18
PRKDC-206ENST00000536429 CYP2E1P05181 493 aaPredicted RBP16.15■□□□□ 0.18
PRKDC-206ENST00000536429 SUPT20HL1Q3ZLR7 823 aa16.15■□□□□ 0.18
PRKDC-206ENST00000536429 HSP90AB4PQ58FF6 505 aa16.15■□□□□ 0.18
PRKDC-206ENST00000536429 SPTY2D1Q68D10 685 aaPredicted RBP16.15■□□□□ 0.18
PRKDC-206ENST00000536429 NSUN4Q96CB9 384 aaKnown RBP16.15■□□□□ 0.18
PRKDC-206ENST00000536429 KIF1BPQ96EK5 621 aa16.15■□□□□ 0.18
PRKDC-206ENST00000536429 CLMNQ96JQ2 1002 aa16.15■□□□□ 0.18
PRKDC-206ENST00000536429 ZNF512BQ96KM6 892 aaPredicted RBP16.15■□□□□ 0.18
PRKDC-206ENST00000536429 CRBNQ96SW2 442 aa16.15■□□□□ 0.18
PRKDC-206ENST00000536429 USP40Q9NVE5 1235 aa16.15■□□□□ 0.18
PRKDC-206ENST00000536429 ZBTB4Q9P1Z0 1013 aaPredicted RBP16.15■□□□□ 0.18
PRKDC-206ENST00000536429 PCDHB15Q9Y5E8 787 aa16.15■□□□□ 0.18
PRKDC-206ENST00000536429 TNNI2P48788 182 aa16.14■□□□□ 0.17
PRKDC-206ENST00000536429 MKRN3Q13064 507 aaKnown RBP16.14■□□□□ 0.17
PRKDC-206ENST00000536429 MAP3K11Q16584 847 aa16.14■□□□□ 0.17
PRKDC-206ENST00000536429 COL13A1Q5TAT6 717 aaPredicted RBP16.14■□□□□ 0.17
PRKDC-206ENST00000536429 ZFPM1Q8IX07 1006 aa16.14■□□□□ 0.17
PRKDC-206ENST00000536429 AIDAQ96BJ3 306 aa16.14■□□□□ 0.17
PRKDC-206ENST00000536429 PIH1D3Q9NQM4 214 aaKnown RBP16.14■□□□□ 0.17
PRKDC-206ENST00000536429 TMOD2Q9NZR1 351 aa16.14■□□□□ 0.17
PRKDC-206ENST00000536429 RAI14Q9P0K7 980 aa16.14■□□□□ 0.17
PRKDC-206ENST00000536429 FAM198AQ9UFP1 575 aa16.14■□□□□ 0.17
PRKDC-206ENST00000536429 TSKSQ9UJT2 592 aa16.14■□□□□ 0.17
PRKDC-206ENST00000536429 MROH7-TTC4A0A0A0MT08 1334 aa16.14■□□□□ 0.17
PRKDC-206ENST00000536429 PPP1R12BO60237 982 aaPredicted RBP16.13■□□□□ 0.17
PRKDC-206ENST00000536429 HSPA8P11142 646 aaKnown RBP16.13■□□□□ 0.17
PRKDC-206ENST00000536429 BTDP43251 543 aa16.13■□□□□ 0.17
PRKDC-206ENST00000536429 TCP10Q12799 353 aa16.13■□□□□ 0.17
PRKDC-206ENST00000536429 FKBP1CQ5VVH2 108 aa16.13■□□□□ 0.17
PRKDC-206ENST00000536429 FAM83AQ86UY5 434 aa16.13■□□□□ 0.17
PRKDC-206ENST00000536429 FAM163AQ96GL9 167 aaPredicted RBP16.13■□□□□ 0.17
PRKDC-206ENST00000536429 SMARCA5O60264 1052 aaPredicted RBP16.12■□□□□ 0.17
PRKDC-206ENST00000536429 RAB11FIP3O75154 756 aa16.12■□□□□ 0.17
PRKDC-206ENST00000536429 LBX1P52954 281 aa16.12■□□□□ 0.17
PRKDC-206ENST00000536429 RHBDL3P58872 404 aa16.12■□□□□ 0.17
PRKDC-206ENST00000536429 CSRNP1Q96S65 589 aa16.12■□□□□ 0.17
PRKDC-206ENST00000536429 DDX4Q9NQI0 724 aaKnown RBP16.12■□□□□ 0.17
PRKDC-206ENST00000536429 LRP2BPQ9P2M1 347 aa16.12■□□□□ 0.17
PRKDC-206ENST00000536429 RFX7Q2KHR2 1363 aa16.12■□□□□ 0.17
PRKDC-206ENST00000536429 GPR75-ASB3A0A0A6YYF3 556 aa16.11■□□□□ 0.17
PRKDC-206ENST00000536429 WDHD1O75717 1129 aaPredicted RBP16.11■□□□□ 0.17
PRKDC-206ENST00000536429 CTCFP49711 727 aaPredicted RBP16.11■□□□□ 0.17
PRKDC-206ENST00000536429 CLASRPQ8N2M8 674 aaKnown RBP16.11■□□□□ 0.17
PRKDC-206ENST00000536429 FAM151AQ8WW52 585 aa16.11■□□□□ 0.17
PRKDC-206ENST00000536429 ANTXR1Q9H6X2 564 aa16.11■□□□□ 0.17
PRKDC-206ENST00000536429 GJA5P36382 358 aa16.1■□□□□ 0.17
PRKDC-206ENST00000536429 IREB2P48200 963 aaKnown RBP16.1■□□□□ 0.17
PRKDC-206ENST00000536429 RGS3P49796 1198 aa16.1■□□□□ 0.17
PRKDC-206ENST00000536429 PPP1R3FQ6ZSY5 799 aaPredicted RBP16.1■□□□□ 0.17
PRKDC-206ENST00000536429 ADGRA1Q86SQ6 560 aa16.1■□□□□ 0.17
PRKDC-206ENST00000536429 SLF2Q8IX21 1173 aa16.1■□□□□ 0.17
PRKDC-206ENST00000536429 IDI2Q9BXS1 227 aa16.1■□□□□ 0.17
PRKDC-206ENST00000536429 AKAP11Q9UKA4 1901 aa16.09■□□□□ 0.17
PRKDC-206ENST00000536429 IFIT2P09913 472 aaKnown RBP16.09■□□□□ 0.17
PRKDC-206ENST00000536429 SLURP2P0DP57 97 aa16.09■□□□□ 0.17
PRKDC-206ENST00000536429 SPRYD7Q5W111 196 aa16.09■□□□□ 0.17
PRKDC-206ENST00000536429 MIGA2Q7L4E1 593 aa16.09■□□□□ 0.17
PRKDC-206ENST00000536429 SH3BP5LQ7L8J4 393 aa16.09■□□□□ 0.17
PRKDC-206ENST00000536429 DDX55Q8NHQ9 600 aaKnown RBP eCLIP16.09■□□□□ 0.17
PRKDC-206ENST00000536429 CNKSR2Q8WXI2 1034 aa16.09■□□□□ 0.17
PRKDC-206ENST00000536429 SLC10A4Q96EP9 437 aa16.09■□□□□ 0.17
PRKDC-206ENST00000536429 BEGAINQ9BUH8 593 aa16.09■□□□□ 0.17
PRKDC-206ENST00000536429 DCTPP1Q9H773 170 aa16.09■□□□□ 0.17
PRKDC-206ENST00000536429 RPAP1Q9BWH6 1393 aaPredicted RBP16.09■□□□□ 0.17
PRKDC-206ENST00000536429 GSTO1P78417 241 aa16.08■□□□□ 0.16
PRKDC-206ENST00000536429 PICALMQ13492 652 aa16.08■□□□□ 0.16
PRKDC-206ENST00000536429 VGLL4Q14135 290 aa16.08■□□□□ 0.16
PRKDC-206ENST00000536429 NAA16Q6N069 864 aaPredicted RBP16.08■□□□□ 0.16
PRKDC-206ENST00000536429 ANKRD13AQ8IZ07 590 aa16.08■□□□□ 0.16
PRKDC-206ENST00000536429 WNK4Q96J92 1243 aa16.08■□□□□ 0.16
PRKDC-206ENST00000536429 LRRCC1Q9C099 1032 aa16.08■□□□□ 0.16
PRKDC-206ENST00000536429 ELP3Q9H9T3 547 aa16.08■□□□□ 0.16
PRKDC-206ENST00000536429 RNF186Q9NXI6 227 aa16.08■□□□□ 0.16
PRKDC-206ENST00000536429 MYH2Q9UKX2 1941 aa16.07■□□□□ 0.16
PRKDC-206ENST00000536429 DDTLA6NHG4 134 aaPredicted RBP16.07■□□□□ 0.16
PRKDC-206ENST00000536429 IDH1O75874 414 aaKnown RBP16.07■□□□□ 0.16
PRKDC-206ENST00000536429 LDHCP07864 332 aa16.07■□□□□ 0.16
PRKDC-206ENST00000536429 MAP3K9P80192 1104 aa16.07■□□□□ 0.16
PRKDC-206ENST00000536429 SH3RF3Q8TEJ3 882 aaPredicted RBP16.07■□□□□ 0.16
PRKDC-206ENST00000536429 EDC3Q96F86 508 aaKnown RBP16.07■□□□□ 0.16
PRKDC-206ENST00000536429 AATFQ9NY61 560 aaKnown RBP eCLIP16.07■□□□□ 0.16
PRKDC-206ENST00000536429 ATRNL1Q5VV63 1379 aa16.07■□□□□ 0.16
PRKDC-206ENST00000536429 ENTPD3O75355 529 aa16.06■□□□□ 0.16
PRKDC-206ENST00000536429 TRPA1O75762 1119 aa16.06■□□□□ 0.16
PRKDC-206ENST00000536429 ZKSCAN4Q969J2 545 aaPredicted RBP16.06■□□□□ 0.16
PRKDC-206ENST00000536429 WRNIP1Q96S55 665 aa16.06■□□□□ 0.16
PRKDC-206ENST00000536429 DNAJC2Q99543 621 aaKnown RBP16.06■□□□□ 0.16
PRKDC-206ENST00000536429 PRDM10Q9NQV6 1147 aa16.06■□□□□ 0.16
PRKDC-206ENST00000536429 UNCXA6NJT0 531 aa16.05■□□□□ 0.16
PRKDC-206ENST00000536429 CYP7A1P22680 504 aa16.05■□□□□ 0.16
PRKDC-206ENST00000536429 INPP5BP32019 993 aa16.05■□□□□ 0.16
PRKDC-206ENST00000536429 DYNLL1P63167 89 aaKnown RBP16.05■□□□□ 0.16
PRKDC-206ENST00000536429 TEX11Q8IYF3 940 aa16.05■□□□□ 0.16
PRKDC-206ENST00000536429 MAGEB6Q8N7X4 407 aa16.05■□□□□ 0.16
PRKDC-206ENST00000536429 PPIL4Q8WUA2 492 aaKnown RBP eCLIP16.05■□□□□ 0.16
PRKDC-206ENST00000536429 OPTNQ96CV9 577 aa16.05■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 47.5 ms