RNA–Protein interactions for RNA: ENST00000534556.1

USH1C-210, Transcript of USH1 protein network component harmonin, humanhuman

TSL 3

Gene USH1C, Length 244 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USH1C-210ENST00000534556 IL1RAPL2Q9NP60 686 aa6.27□□□□□ -1.41
USH1C-210ENST00000534556 DDX4Q9NQI0 724 aaKnown RBP6.27□□□□□ -1.41
USH1C-210ENST00000534556 PCDHB15Q9Y5E8 787 aa6.27□□□□□ -1.41
USH1C-210ENST00000534556 ATRNL1Q5VV63 1379 aa6.27□□□□□ -1.41
USH1C-210ENST00000534556 GAKO14976 1311 aa6.26□□□□□ -1.41
USH1C-210ENST00000534556 CHGBP05060 677 aa6.26□□□□□ -1.41
USH1C-210ENST00000534556 CYP2E1P05181 493 aaPredicted RBP6.26□□□□□ -1.41
USH1C-210ENST00000534556 MAP2K2P36507 400 aa6.26□□□□□ -1.41
USH1C-210ENST00000534556 RHBDL3P58872 404 aa6.26□□□□□ -1.41
USH1C-210ENST00000534556 CAP1Q01518 475 aa6.26□□□□□ -1.41
USH1C-210ENST00000534556 MECOMQ03112 1051 aa6.26□□□□□ -1.41
USH1C-210ENST00000534556 MKRN3Q13064 507 aaKnown RBP6.26□□□□□ -1.41
USH1C-210ENST00000534556 PDE3AQ14432 1141 aa6.26□□□□□ -1.41
USH1C-210ENST00000534556 MAP3K11Q16584 847 aa6.26□□□□□ -1.41
USH1C-210ENST00000534556 PPP1R3FQ6ZSY5 799 aaPredicted RBP6.26□□□□□ -1.41
USH1C-210ENST00000534556 TEKT1Q969V4 418 aa6.26□□□□□ -1.41
USH1C-210ENST00000534556 ANTXR1Q9H6X2 564 aa6.26□□□□□ -1.41
USH1C-210ENST00000534556 GPR108Q9NPR9 543 aa6.26□□□□□ -1.41
USH1C-210ENST00000534556 PIH1D3Q9NQM4 214 aaKnown RBP6.26□□□□□ -1.41
USH1C-210ENST00000534556 DENND2AQ9ULE3 1009 aa6.26□□□□□ -1.41
USH1C-210ENST00000534556 ANGEL1Q9UNK9 670 aaKnown RBP6.26□□□□□ -1.41
USH1C-210ENST00000534556 HDAC5Q9UQL6 1122 aa6.26□□□□□ -1.41
USH1C-210ENST00000534556 SUGT1Q9Y2Z0 365 aa6.26□□□□□ -1.41
USH1C-210ENST00000534556 PDS5AQ29RF7 1337 aaKnown RBP6.25□□□□□ -1.41
USH1C-210ENST00000534556 PARP14Q460N5 1801 aa6.25□□□□□ -1.41
USH1C-210ENST00000534556 DNAH12Q6ZR08 3092 aa6.25□□□□□ -1.41
USH1C-210ENST00000534556 APBB1O00213 710 aa6.25□□□□□ -1.41
USH1C-210ENST00000534556 SEMA3EO15041 775 aa6.25□□□□□ -1.41
USH1C-210ENST00000534556 SMARCA5O60264 1052 aaPredicted RBP6.25□□□□□ -1.41
USH1C-210ENST00000534556 WDHD1O75717 1129 aaPredicted RBP6.25□□□□□ -1.41
USH1C-210ENST00000534556 LDHBP07195 334 aaKnown RBP6.25□□□□□ -1.41
USH1C-210ENST00000534556 ECE1P42892 770 aa6.25□□□□□ -1.41
USH1C-210ENST00000534556 ZAP70P43403 619 aa6.25□□□□□ -1.41
USH1C-210ENST00000534556 RRP1P56182 461 aaKnown RBP6.25□□□□□ -1.41
USH1C-210ENST00000534556 FKBP1BP68106 108 aa6.25□□□□□ -1.41
USH1C-210ENST00000534556 TCP10Q12799 353 aa6.25□□□□□ -1.41
USH1C-210ENST00000534556 SLFNL1Q499Z3 407 aa6.25□□□□□ -1.41
USH1C-210ENST00000534556 SPATA5Q8NB90 893 aa6.25□□□□□ -1.41
USH1C-210ENST00000534556 RHPN1Q8TCX5 695 aa6.25□□□□□ -1.41
USH1C-210ENST00000534556 NSUN4Q96CB9 384 aaKnown RBP6.25□□□□□ -1.41
USH1C-210ENST00000534556 EDC3Q96F86 508 aaKnown RBP6.25□□□□□ -1.41
USH1C-210ENST00000534556 FAM163AQ96GL9 167 aaPredicted RBP6.25□□□□□ -1.41
USH1C-210ENST00000534556 RNF186Q9NXI6 227 aa6.25□□□□□ -1.41
USH1C-210ENST00000534556 ZBTB4Q9P1Z0 1013 aaPredicted RBP6.25□□□□□ -1.41
USH1C-210ENST00000534556 ABCF2Q9UG63 623 aa6.25□□□□□ -1.41
USH1C-210ENST00000534556 DDX19BQ9UMR2 479 aa6.25□□□□□ -1.41
USH1C-210ENST00000534556 AKAP2Q9Y2D5 859 aa6.25□□□□□ -1.41
USH1C-210ENST00000534556 LOC285556D6RIA3 1793 aa6.25□□□□□ -1.41
USH1C-210ENST00000534556 MROH7-TTC4A0A0A0MT08 1334 aa6.25□□□□□ -1.41
USH1C-210ENST00000534556 DDTLA6NHG4 134 aaPredicted RBP6.24□□□□□ -1.41
USH1C-210ENST00000534556 IGF2BP3O00425 579 aaKnown RBP eCLIP6.24□□□□□ -1.41
USH1C-210ENST00000534556 INPP5BP32019 993 aa6.24□□□□□ -1.41
USH1C-210ENST00000534556 CTCFP49711 727 aaPredicted RBP6.24□□□□□ -1.41
USH1C-210ENST00000534556 RGS3P49796 1198 aa6.24□□□□□ -1.41
USH1C-210ENST00000534556 DYNLL1P63167 89 aaKnown RBP6.24□□□□□ -1.41
USH1C-210ENST00000534556 MAP2K1Q02750 393 aaPredicted RBP6.24□□□□□ -1.41
USH1C-210ENST00000534556 EVX2Q03828 476 aa6.24□□□□□ -1.41
USH1C-210ENST00000534556 NOGQ13253 232 aa6.24□□□□□ -1.41
USH1C-210ENST00000534556 TTLL12Q14166 644 aaPredicted RBP6.24□□□□□ -1.41
USH1C-210ENST00000534556 RRP1BQ14684 758 aaKnown RBP6.24□□□□□ -1.41
USH1C-210ENST00000534556 SPRYD7Q5W111 196 aa6.24□□□□□ -1.41
USH1C-210ENST00000534556 MIGA2Q7L4E1 593 aa6.24□□□□□ -1.41
USH1C-210ENST00000534556 FAM83AQ86UY5 434 aa6.24□□□□□ -1.41
USH1C-210ENST00000534556 DDX55Q8NHQ9 600 aaKnown RBP eCLIP6.24□□□□□ -1.41
USH1C-210ENST00000534556 CCDC102AQ96A19 550 aa6.24□□□□□ -1.41
USH1C-210ENST00000534556 WNK4Q96J92 1243 aa6.24□□□□□ -1.41
USH1C-210ENST00000534556 ZNF512BQ96KM6 892 aaPredicted RBP6.24□□□□□ -1.41
USH1C-210ENST00000534556 CRBNQ96SW2 442 aa6.24□□□□□ -1.41
USH1C-210ENST00000534556 PTPN18Q99952 460 aa6.24□□□□□ -1.41
USH1C-210ENST00000534556 USP40Q9NVE5 1235 aa6.24□□□□□ -1.41
USH1C-210ENST00000534556 GNL3LQ9NVN8 582 aaKnown RBP6.24□□□□□ -1.41
USH1C-210ENST00000534556 FRMD4AQ9P2Q2 1039 aaPredicted RBP6.24□□□□□ -1.41
USH1C-210ENST00000534556 PPP2R3BQ9Y5P8 575 aa6.24□□□□□ -1.41
USH1C-210ENST00000534556 SNCAIPQ9Y6H5 919 aa6.24□□□□□ -1.41
USH1C-210ENST00000534556 RLFQ13129 1914 aa6.24□□□□□ -1.41
USH1C-210ENST00000534556 PLXNB2O15031 1838 aa6.24□□□□□ -1.41
USH1C-210ENST00000534556 RPAP1Q9BWH6 1393 aaPredicted RBP6.23□□□□□ -1.41
USH1C-210ENST00000534556 GPR75-ASB3A0A0A6YYF3 556 aa6.23□□□□□ -1.41
USH1C-210ENST00000534556 FAM196BA6NMK8 535 aa6.23□□□□□ -1.41
USH1C-210ENST00000534556 PHF20L1A8MW92 1017 aa6.23□□□□□ -1.41
USH1C-210ENST00000534556 TRPA1O75762 1119 aa6.23□□□□□ -1.41
USH1C-210ENST00000534556 BTDP43251 543 aa6.23□□□□□ -1.41
USH1C-210ENST00000534556 TM4SF4P48230 202 aa6.23□□□□□ -1.41
USH1C-210ENST00000534556 JAG1P78504 1218 aa6.23□□□□□ -1.41
USH1C-210ENST00000534556 OS9Q13438 667 aaPredicted RBP6.23□□□□□ -1.41
USH1C-210ENST00000534556 VGLL4Q14135 290 aa6.23□□□□□ -1.41
USH1C-210ENST00000534556 SHROOM1Q2M3G4 852 aaPredicted RBP6.23□□□□□ -1.41
USH1C-210ENST00000534556 FKBP1CQ5VVH2 108 aa6.23□□□□□ -1.41
USH1C-210ENST00000534556 ERICH6Q7L0X2 663 aa6.23□□□□□ -1.41
USH1C-210ENST00000534556 AACSQ86V21 672 aa6.23□□□□□ -1.41
USH1C-210ENST00000534556 RPAP2Q8IXW5 612 aaPredicted RBP6.23□□□□□ -1.41
USH1C-210ENST00000534556 OTUD7AQ8TE49 926 aaPredicted RBP6.23□□□□□ -1.41
USH1C-210ENST00000534556 SH3RF3Q8TEJ3 882 aaPredicted RBP6.23□□□□□ -1.41
USH1C-210ENST00000534556 FAM151AQ8WW52 585 aa6.23□□□□□ -1.41
USH1C-210ENST00000534556 ZKSCAN4Q969J2 545 aaPredicted RBP6.23□□□□□ -1.41
USH1C-210ENST00000534556 MS4A4AQ96JQ5 239 aa6.23□□□□□ -1.41
USH1C-210ENST00000534556 IDI2Q9BXS1 227 aa6.23□□□□□ -1.41
USH1C-210ENST00000534556 ELP3Q9H9T3 547 aa6.23□□□□□ -1.41
USH1C-210ENST00000534556 PRDM10Q9NQV6 1147 aa6.23□□□□□ -1.41
USH1C-210ENST00000534556 ZNF112Q9UJU3 913 aa6.23□□□□□ -1.41
Retrieved 100 of 20,778 RNA–protein pairs in 12.4 ms