RNA–Protein interactions for RNA: ENST00000533244.5

CCS-208, Transcript of copper chaperone for superoxide dismutase, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCS, Length 1,430 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCS-208ENST00000533244 RFX7Q2KHR2 1363 aa25.01■■□□□ 1.59
CCS-208ENST00000533244 SUPT20HL1Q3ZLR7 823 aa25■■□□□ 1.59
CCS-208ENST00000533244 PAXIP1Q6ZW49 1069 aaPredicted RBP25■■□□□ 1.59
CCS-208ENST00000533244 PPIL4Q8WUA2 492 aaKnown RBP eCLIP25■■□□□ 1.59
CCS-208ENST00000533244 RPAP1Q9BWH6 1393 aaPredicted RBP25■■□□□ 1.59
CCS-208ENST00000533244 MYO5AQ9Y4I1 1855 aaKnown RBP24.99■■□□□ 1.59
CCS-208ENST00000533244 DOCK2Q92608 1830 aa24.99■■□□□ 1.59
CCS-208ENST00000533244 MAP3K11Q16584 847 aa24.99■■□□□ 1.59
CCS-208ENST00000533244 CDAN1Q8IWY9 1227 aa24.99■■□□□ 1.59
CCS-208ENST00000533244 TMEM39BQ9GZU3 492 aa24.99■■□□□ 1.59
CCS-208ENST00000533244 PIH1D3Q9NQM4 214 aaKnown RBP24.99■■□□□ 1.59
CCS-208ENST00000533244 RAI14Q9P0K7 980 aa24.99■■□□□ 1.59
CCS-208ENST00000533244 LRP2BPQ9P2M1 347 aa24.99■■□□□ 1.59
CCS-208ENST00000533244 GPR75-ASB3A0A0A6YYF3 556 aa24.98■■□□□ 1.59
CCS-208ENST00000533244 SMARCA5O60264 1052 aaPredicted RBP24.98■■□□□ 1.59
CCS-208ENST00000533244 GSTO1P78417 241 aa24.98■■□□□ 1.59
CCS-208ENST00000533244 USP40Q9NVE5 1235 aa24.98■■□□□ 1.59
CCS-208ENST00000533244 FAM155AB1AL88 458 aaPredicted RBP24.97■■□□□ 1.59
CCS-208ENST00000533244 UBE2Q2LH0YL09 131 aa24.97■■□□□ 1.59
CCS-208ENST00000533244 BTDP43251 543 aa24.97■■□□□ 1.59
CCS-208ENST00000533244 ARMC9Q7Z3E5 817 aa24.97■■□□□ 1.59
CCS-208ENST00000533244 LDHCP07864 332 aa24.96■■□□□ 1.59
CCS-208ENST00000533244 MAP2K2P36507 400 aa24.96■■□□□ 1.59
CCS-208ENST00000533244 NFIAQ12857 509 aa24.96■■□□□ 1.59
CCS-208ENST00000533244 HDAC1Q13547 482 aaPredicted RBP24.96■■□□□ 1.59
CCS-208ENST00000533244 LDLRAD1Q5T700 205 aa24.96■■□□□ 1.59
CCS-208ENST00000533244 IDI2Q9BXS1 227 aa24.96■■□□□ 1.59
CCS-208ENST00000533244 FAM198AQ9UFP1 575 aa24.96■■□□□ 1.59
CCS-208ENST00000533244 NDUFB9Q9Y6M9 179 aa24.96■■□□□ 1.59
CCS-208ENST00000533244 SLC10A3P09131 477 aa24.95■■□□□ 1.59
CCS-208ENST00000533244 RHBDL3P58872 404 aa24.95■■□□□ 1.59
CCS-208ENST00000533244 TTLL12Q14166 644 aaPredicted RBP24.95■■□□□ 1.59
CCS-208ENST00000533244 EXOC6Q8TAG9 804 aa24.95■■□□□ 1.59
CCS-208ENST00000533244 FAM151AQ8WW52 585 aa24.95■■□□□ 1.59
CCS-208ENST00000533244 CCDC102AQ96A19 550 aa24.95■■□□□ 1.59
CCS-208ENST00000533244 FZD1Q9UP38 647 aa24.95■■□□□ 1.59
CCS-208ENST00000533244 PPP1R12BO60237 982 aaPredicted RBP24.95■■□□□ 1.58
CCS-208ENST00000533244 AOC2O75106 756 aa24.95■■□□□ 1.58
CCS-208ENST00000533244 ATP5JP18859 108 aa24.95■■□□□ 1.58
CCS-208ENST00000533244 ZNF157P51786 506 aaPredicted RBP24.95■■□□□ 1.58
CCS-208ENST00000533244 GRM1Q13255 1194 aa24.95■■□□□ 1.58
CCS-208ENST00000533244 PRKG1Q13976 671 aa24.95■■□□□ 1.58
CCS-208ENST00000533244 ANTXR1Q9H6X2 564 aa24.95■■□□□ 1.58
CCS-208ENST00000533244 ANGEL1Q9UNK9 670 aaKnown RBP24.95■■□□□ 1.58
CCS-208ENST00000533244 WDHD1O75717 1129 aaPredicted RBP24.94■■□□□ 1.58
CCS-208ENST00000533244 MAP4K4O95819 1239 aaPredicted RBP24.94■■□□□ 1.58
CCS-208ENST00000533244 NOGQ13253 232 aa24.94■■□□□ 1.58
CCS-208ENST00000533244 RASAL3Q86YV0 1011 aa24.94■■□□□ 1.58
CCS-208ENST00000533244 UNCXA6NJT0 531 aa24.93■■□□□ 1.58
CCS-208ENST00000533244 USP2O75604 605 aaPredicted RBP24.93■■□□□ 1.58
CCS-208ENST00000533244 NAA16Q6N069 864 aaPredicted RBP24.93■■□□□ 1.58
CCS-208ENST00000533244 ENTPD3O75355 529 aa24.92■■□□□ 1.58
CCS-208ENST00000533244 HSPA1AP0DMV8 641 aaKnown RBP24.92■■□□□ 1.58
CCS-208ENST00000533244 HSPA1BP0DMV9 641 aaKnown RBP24.92■■□□□ 1.58
CCS-208ENST00000533244 TMED8Q6PL24 325 aaPredicted RBP24.92■■□□□ 1.58
CCS-208ENST00000533244 BCL11AQ9H165 835 aa24.92■■□□□ 1.58
CCS-208ENST00000533244 WBP1LQ9NX94 342 aa24.92■■□□□ 1.58
CCS-208ENST00000533244 OTOFQ9HC10 1997 aa24.92■■□□□ 1.58
CCS-208ENST00000533244 TTF1Q15361 905 aaPredicted RBP24.91■■□□□ 1.58
CCS-208ENST00000533244 ADGRA1Q86SQ6 560 aa24.91■■□□□ 1.58
CCS-208ENST00000533244 ZIC5Q96T25 663 aa24.91■■□□□ 1.58
CCS-208ENST00000533244 NPM3O75607 178 aaKnown RBP24.9■■□□□ 1.58
CCS-208ENST00000533244 IDH1O75874 414 aaKnown RBP24.9■■□□□ 1.58
CCS-208ENST00000533244 RGS3P49796 1198 aa24.9■■□□□ 1.58
CCS-208ENST00000533244 PPP4CP60510 307 aa24.9■■□□□ 1.58
CCS-208ENST00000533244 MAP2K1Q02750 393 aaPredicted RBP24.9■■□□□ 1.58
CCS-208ENST00000533244 TCP10Q12799 353 aa24.9■■□□□ 1.58
CCS-208ENST00000533244 DDX4Q9NQI0 724 aaKnown RBP24.9■■□□□ 1.58
CCS-208ENST00000533244 IREB2P48200 963 aaKnown RBP24.89■■□□□ 1.58
CCS-208ENST00000533244 ZFPM1Q8IX07 1006 aa24.89■■□□□ 1.58
CCS-208ENST00000533244 GCC1Q96CN9 775 aa24.89■■□□□ 1.58
CCS-208ENST00000533244 HOOK2Q96ED9 719 aa24.89■■□□□ 1.58
CCS-208ENST00000533244 HAUS7Q99871 368 aa24.89■■□□□ 1.58
CCS-208ENST00000533244 MAP3K12Q12852 859 aa24.88■■□□□ 1.57
CCS-208ENST00000533244 DNAJC2Q99543 621 aaKnown RBP24.88■■□□□ 1.57
CCS-208ENST00000533244 BOLA2Q9H3K6 86 aa24.88■■□□□ 1.57
CCS-208ENST00000533244 ECHDC1Q9NTX5 307 aa24.88■■□□□ 1.57
CCS-208ENST00000533244 ATRNL1Q5VV63 1379 aa24.88■■□□□ 1.57
CCS-208ENST00000533244 GOLIM4O00461 696 aa24.87■■□□□ 1.57
CCS-208ENST00000533244 ANKRD13AQ8IZ07 590 aa24.87■■□□□ 1.57
CCS-208ENST00000533244 DDX55Q8NHQ9 600 aaKnown RBP eCLIP24.87■■□□□ 1.573e-9■■■■■ 39
CCS-208ENST00000533244 COL2A1P02458 1487 aaPredicted RBP24.87■■□□□ 1.57
CCS-208ENST00000533244 BAG3O95817 575 aa24.86■■□□□ 1.57
CCS-208ENST00000533244 CYP7A1P22680 504 aa24.86■■□□□ 1.57
CCS-208ENST00000533244 SH3BP5LQ7L8J4 393 aa24.86■■□□□ 1.57
CCS-208ENST00000533244 MAGEB6Q8N7X4 407 aa24.86■■□□□ 1.57
CCS-208ENST00000533244 EDC3Q96F86 508 aaKnown RBP24.86■■□□□ 1.57
CCS-208ENST00000533244 CLMNQ96JQ2 1002 aa24.86■■□□□ 1.57
CCS-208ENST00000533244 NOL10Q9BSC4 688 aaKnown RBP24.86■■□□□ 1.57
CCS-208ENST00000533244 PAG1Q9NWQ8 432 aa24.86■■□□□ 1.57
CCS-208ENST00000533244 AATFQ9NY61 560 aaKnown RBP eCLIP24.86■■□□□ 1.57
CCS-208ENST00000533244 FOCADQ5VW36 1801 aa24.86■■□□□ 1.57
CCS-208ENST00000533244 LAMB1P07942 1786 aa24.86■■□□□ 1.57
CCS-208ENST00000533244 KIF23Q02241 960 aaPredicted RBP24.86■■□□□ 1.57
CCS-208ENST00000533244 SH3RF3Q8TEJ3 882 aaPredicted RBP24.86■■□□□ 1.57
CCS-208ENST00000533244 CDK5RAP2Q96SN8 1893 aa24.85■■□□□ 1.57
CCS-208ENST00000533244 SALL3Q9BXA9 1300 aa24.85■■□□□ 1.57
CCS-208ENST00000533244 PLCG2P16885 1265 aa24.85■■□□□ 1.57
CCS-208ENST00000533244 DCAF15Q66K64 600 aa24.85■■□□□ 1.57
CCS-208ENST00000533244 PPP1R3FQ6ZSY5 799 aaPredicted RBP24.85■■□□□ 1.57
Retrieved 100 of 20,778 RNA–protein pairs in 42.6 ms