RNA–Protein interactions for RNA: ENST00000533064.1

TRIM3-212, Transcript of tripartite motif containing 3, humanhuman

TSL 1 (best)

Gene TRIM3, Length 1,654 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM3-212ENST00000533064 CRKP46108 304 aa17.01■□□□□ 0.31
TRIM3-212ENST00000533064 STRBPQ96SI9 672 aaKnown RBP17.01■□□□□ 0.31
TRIM3-212ENST00000533064 DSCC1Q9BVC3 393 aa17.01■□□□□ 0.31
TRIM3-212ENST00000533064 USP26Q9BXU7 913 aa17.01■□□□□ 0.31
TRIM3-212ENST00000533064 LSG1Q9H089 658 aaKnown RBP17.01■□□□□ 0.31
TRIM3-212ENST00000533064 SERPINA10Q9UK55 444 aa17.01■□□□□ 0.31
TRIM3-212ENST00000533064 ZBTB12Q9Y330 459 aaPredicted RBP17.01■□□□□ 0.31
TRIM3-212ENST00000533064 GAKO14976 1311 aa17.01■□□□□ 0.31
TRIM3-212ENST00000533064 APPP05067 770 aa17.01■□□□□ 0.31
TRIM3-212ENST00000533064 HSPD1P10809 573 aaKnown RBP17.01■□□□□ 0.31
TRIM3-212ENST00000533064 BTDP43251 543 aa17.01■□□□□ 0.31
TRIM3-212ENST00000533064 LCORLQ8N3X6 602 aa17.01■□□□□ 0.31
TRIM3-212ENST00000533064 GMLQ99445 158 aa17.01■□□□□ 0.31
TRIM3-212ENST00000533064 RIOK1Q9BRS2 568 aaKnown RBP17.01■□□□□ 0.31
TRIM3-212ENST00000533064 CRNKL1Q9BZJ0 848 aaKnown RBP17.01■□□□□ 0.31
TRIM3-212ENST00000533064 DAGLAQ9Y4D2 1042 aa17.01■□□□□ 0.31
TRIM3-212ENST00000533064 ZNF541Q9H0D2 1346 aa17■□□□□ 0.31
TRIM3-212ENST00000533064 GPR75-ASB3A0A0A6YYF3 556 aa17■□□□□ 0.31
TRIM3-212ENST00000533064 USP17L8P0C7I0 530 aa17■□□□□ 0.31
TRIM3-212ENST00000533064 PPP4CP60510 307 aa17■□□□□ 0.31
TRIM3-212ENST00000533064 DYNLL1P63167 89 aaKnown RBP17■□□□□ 0.31
TRIM3-212ENST00000533064 PTH1RQ03431 593 aa17■□□□□ 0.31
TRIM3-212ENST00000533064 GPC2Q8N158 579 aa17■□□□□ 0.31
TRIM3-212ENST00000533064 C22orf23Q9BZE7 217 aa17■□□□□ 0.31
TRIM3-212ENST00000533064 SLC4A4Q9Y6R1 1079 aa17■□□□□ 0.31
TRIM3-212ENST00000533064 POLR2AP24928 1970 aaKnown RBP16.99■□□□□ 0.31
TRIM3-212ENST00000533064 DPF2Q92785 391 aa16.99■□□□□ 0.31
TRIM3-212ENST00000533064 MAP4K1Q92918 833 aa16.99■□□□□ 0.31
TRIM3-212ENST00000533064 NACAP1Q9BZK3 213 aa16.99■□□□□ 0.31
TRIM3-212ENST00000533064 U3KPZ7 1027 aaPredicted RBP16.99■□□□□ 0.31
TRIM3-212ENST00000533064 RPAP1Q9BWH6 1393 aaPredicted RBP16.99■□□□□ 0.31
TRIM3-212ENST00000533064 ZC3H4Q9UPT8 1303 aaKnown RBP16.99■□□□□ 0.31
TRIM3-212ENST00000533064 PATL2C9JE40 543 aaKnown RBP16.98■□□□□ 0.31
TRIM3-212ENST00000533064 VPS53Q5VIR6 699 aa16.98■□□□□ 0.31
TRIM3-212ENST00000533064 ZDHHC15Q96MV8 337 aa16.98■□□□□ 0.31
TRIM3-212ENST00000533064 CTNNA3Q9UI47 895 aa16.98■□□□□ 0.31
TRIM3-212ENST00000533064 GMPSP49915 693 aaPredicted RBP16.97■□□□□ 0.31
TRIM3-212ENST00000533064 CFAP100Q494V2 611 aa16.97■□□□□ 0.31
TRIM3-212ENST00000533064 RNF20Q5VTR2 975 aa16.97■□□□□ 0.31
TRIM3-212ENST00000533064 DPY19L2Q6NUT2 758 aa16.97■□□□□ 0.31
TRIM3-212ENST00000533064 RBM8AQ9Y5S9 174 aaKnown RBP16.97■□□□□ 0.31
TRIM3-212ENST00000533064 SCN4AP35499 1836 aa16.97■□□□□ 0.31
TRIM3-212ENST00000533064 USP5P45974 858 aa16.97■□□□□ 0.31
TRIM3-212ENST00000533064 RBM25P49756 843 aaKnown RBP16.97■□□□□ 0.31
TRIM3-212ENST00000533064 DLGAP5Q15398 846 aa16.97■□□□□ 0.31
TRIM3-212ENST00000533064 TEX11Q8IYF3 940 aa16.97■□□□□ 0.31
TRIM3-212ENST00000533064 SH3RF3Q8TEJ3 882 aaPredicted RBP16.97■□□□□ 0.31
TRIM3-212ENST00000533064 NAPBQ9H115 298 aa16.97■□□□□ 0.31
TRIM3-212ENST00000533064 TDO2P48775 406 aa16.96■□□□□ 0.31
TRIM3-212ENST00000533064 ATP8A2Q9NTI2 1148 aa16.96■□□□□ 0.31
TRIM3-212ENST00000533064 GSG1L2A8MUP6 293 aa16.95■□□□□ 0.3
TRIM3-212ENST00000533064 H7C1D1 291 aa16.95■□□□□ 0.3
TRIM3-212ENST00000533064 PRKAB2O43741 272 aa16.95■□□□□ 0.3
TRIM3-212ENST00000533064 ZKSCAN1P17029 563 aaPredicted RBP16.95■□□□□ 0.3
TRIM3-212ENST00000533064 ALX1Q15699 326 aa16.95■□□□□ 0.3
TRIM3-212ENST00000533064 GIMAP6Q6P9H5 292 aa16.95■□□□□ 0.3
TRIM3-212ENST00000533064 IFNL3Q8IZI9 196 aa16.95■□□□□ 0.3
TRIM3-212ENST00000533064 SDR42E1Q8WUS8 393 aa16.95■□□□□ 0.3
TRIM3-212ENST00000533064 USP40Q9NVE5 1235 aa16.95■□□□□ 0.3
TRIM3-212ENST00000533064 CNOT7Q9UIV1 285 aaKnown RBP16.95■□□□□ 0.3
TRIM3-212ENST00000533064 ZMYM6O95789 1325 aa16.95■□□□□ 0.3
TRIM3-212ENST00000533064 MYO1BO43795 1136 aa16.94■□□□□ 0.3
TRIM3-212ENST00000533064 FGAP02671 866 aa16.94■□□□□ 0.3
TRIM3-212ENST00000533064 HSPA4P34932 840 aa16.94■□□□□ 0.3
TRIM3-212ENST00000533064 APOBEC3HQ6NTF7 200 aaKnown RBP16.94■□□□□ 0.3
TRIM3-212ENST00000533064 MICALL2Q8IY33 904 aa16.94■□□□□ 0.3
TRIM3-212ENST00000533064 MYOZ2Q9NPC6 264 aa16.94■□□□□ 0.3
TRIM3-212ENST00000533064 TMOD2Q9NZR1 351 aa16.94■□□□□ 0.3
TRIM3-212ENST00000533064 DDX60LQ5H9U9 1706 aaKnown RBP16.94■□□□□ 0.3
TRIM3-212ENST00000533064 LMOD1P29536 600 aaPredicted RBP16.94■□□□□ 0.3
TRIM3-212ENST00000533064 RHBDL3P58872 404 aa16.94■□□□□ 0.3
TRIM3-212ENST00000533064 ZNF280AP59817 542 aaPredicted RBP16.94■□□□□ 0.3
TRIM3-212ENST00000533064 NECTIN1Q15223 517 aa16.94■□□□□ 0.3
TRIM3-212ENST00000533064 IMMTQ16891 758 aaKnown RBP16.94■□□□□ 0.3
TRIM3-212ENST00000533064 CDC42EP5Q6NZY7 148 aa16.94■□□□□ 0.3
TRIM3-212ENST00000533064 AMOTL1Q8IY63 956 aa16.94■□□□□ 0.3
TRIM3-212ENST00000533064 MTMR14Q8NCE2 650 aa16.94■□□□□ 0.3
TRIM3-212ENST00000533064 TGFBRAP1Q8WUH2 860 aa16.94■□□□□ 0.3
TRIM3-212ENST00000533064 SPDYE2BA6NHP3 402 aa16.93■□□□□ 0.3
TRIM3-212ENST00000533064 FOXP2O15409 715 aa16.93■□□□□ 0.3
TRIM3-212ENST00000533064 DDNO94850 711 aaPredicted RBP16.93■□□□□ 0.3
TRIM3-212ENST00000533064 SPDYE6P0CI01 402 aa16.93■□□□□ 0.3
TRIM3-212ENST00000533064 CREB3L3Q68CJ9 461 aa16.93■□□□□ 0.3
TRIM3-212ENST00000533064 ZNF213O14771 459 aa16.92■□□□□ 0.3
TRIM3-212ENST00000533064 ANAPC15P60006 121 aa16.92■□□□□ 0.3
TRIM3-212ENST00000533064 PRMT6Q96LA8 375 aaPredicted RBP16.92■□□□□ 0.3
TRIM3-212ENST00000533064 EPB41L4AQ9HCS5 686 aaPredicted RBP16.92■□□□□ 0.3
TRIM3-212ENST00000533064 DCP1AQ9NPI6 582 aaPredicted RBP16.92■□□□□ 0.3
TRIM3-212ENST00000533064 GPRC5DQ9NZD1 345 aa16.92■□□□□ 0.3
TRIM3-212ENST00000533064 SLC27A2O14975 620 aa16.91■□□□□ 0.3
TRIM3-212ENST00000533064 RBM26Q5T8P6 1007 aaKnown RBP16.91■□□□□ 0.3
TRIM3-212ENST00000533064 MAPKAPK5Q8IW41 473 aa16.91■□□□□ 0.3
TRIM3-212ENST00000533064 TDRD3Q9H7E2 651 aaKnown RBP16.91■□□□□ 0.3
TRIM3-212ENST00000533064 MCM9Q9NXL9 1143 aa16.91■□□□□ 0.3
TRIM3-212ENST00000533064 ARPP21Q9UBL0 812 aaPredicted RBP16.91■□□□□ 0.3
TRIM3-212ENST00000533064 PCDHAC2Q9Y5I4 1007 aa16.91■□□□□ 0.3
TRIM3-212ENST00000533064 PICALMQ13492 652 aa16.91■□□□□ 0.3
TRIM3-212ENST00000533064 FLT1P17948 1338 aa16.91■□□□□ 0.3
TRIM3-212ENST00000533064 SHTN1A0MZ66 631 aa16.9■□□□□ 0.3
TRIM3-212ENST00000533064 GLTPD2A6NH11 291 aa16.9■□□□□ 0.3
Retrieved 100 of 20,778 RNA–protein pairs in 18.9 ms