RNA–Protein interactions for RNA: ENST00000531924.1

VPS28-215, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 3

Gene VPS28, Length 695 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-215ENST00000531924 FAM151AQ8WW52 585 aa18.27■□□□□ 0.52
VPS28-215ENST00000531924 BRI3BPQ8WY22 251 aa18.27■□□□□ 0.52
VPS28-215ENST00000531924 ZKSCAN4Q969J2 545 aaPredicted RBP18.27■□□□□ 0.52
VPS28-215ENST00000531924 MS4A4AQ96JQ5 239 aa18.27■□□□□ 0.52
VPS28-215ENST00000531924 ZNF341Q9BYN7 854 aa18.27■□□□□ 0.52
VPS28-215ENST00000531924 USP40Q9NVE5 1235 aa18.27■□□□□ 0.52
VPS28-215ENST00000531924 AKAP2Q9Y2D5 859 aa18.27■□□□□ 0.52
VPS28-215ENST00000531924 SPDYE5A6NIY4 337 aa18.26■□□□□ 0.51
VPS28-215ENST00000531924 CETPP11597 493 aa18.26■□□□□ 0.51
VPS28-215ENST00000531924 PRDX5P30044 214 aa18.26■□□□□ 0.51
VPS28-215ENST00000531924 PHKA1P46020 1223 aa18.26■□□□□ 0.51
VPS28-215ENST00000531924 CDC42EP5Q6NZY7 148 aa18.26■□□□□ 0.51
VPS28-215ENST00000531924 MIGA2Q7L4E1 593 aa18.26■□□□□ 0.51
VPS28-215ENST00000531924 DZIP1Q86YF9 867 aaKnown RBP18.26■□□□□ 0.51
VPS28-215ENST00000531924 EFCC1Q9HA90 598 aa18.26■□□□□ 0.51
VPS28-215ENST00000531924 DAGLAQ9Y4D2 1042 aa18.26■□□□□ 0.51
VPS28-215ENST00000531924 ADORA1P30542 326 aa18.25■□□□□ 0.51
VPS28-215ENST00000531924 SNAPC2Q13487 334 aa18.25■□□□□ 0.51
VPS28-215ENST00000531924 GORABQ5T7V8 394 aa18.25■□□□□ 0.51
VPS28-215ENST00000531924 CCDC102BQ68D86 513 aa18.25■□□□□ 0.51
VPS28-215ENST00000531924 SLF2Q8IX21 1173 aa18.25■□□□□ 0.51
VPS28-215ENST00000531924 SALL1Q9NSC2 1324 aa18.24■□□□□ 0.51
VPS28-215ENST00000531924 GNAI2P04899 355 aa18.24■□□□□ 0.51
VPS28-215ENST00000531924 TIMM10P62072 90 aa18.24■□□□□ 0.51
VPS28-215ENST00000531924 MVPQ14764 893 aaKnown RBP18.24■□□□□ 0.51
VPS28-215ENST00000531924 SPTY2D1Q68D10 685 aaPredicted RBP18.24■□□□□ 0.51
VPS28-215ENST00000531924 NEUROD6Q96NK8 337 aa18.24■□□□□ 0.51
VPS28-215ENST00000531924 ABCF2Q9UG63 623 aa18.24■□□□□ 0.51
VPS28-215ENST00000531924 SNCAIPQ9Y6H5 919 aa18.24■□□□□ 0.51
VPS28-215ENST00000531924 RPAP1Q9BWH6 1393 aaPredicted RBP18.24■□□□□ 0.51
VPS28-215ENST00000531924 TFCP2Q12800 502 aa18.23■□□□□ 0.51
VPS28-215ENST00000531924 PPIL2Q13356 520 aa18.23■□□□□ 0.51
VPS28-215ENST00000531924 ATF7IPQ6VMQ6 1270 aa18.23■□□□□ 0.51
VPS28-215ENST00000531924 A0A1B0GUL7 405 aa18.22■□□□□ 0.51
VPS28-215ENST00000531924 IRF6O14896 467 aa18.22■□□□□ 0.51
VPS28-215ENST00000531924 TRIM27P14373 513 aa18.22■□□□□ 0.51
VPS28-215ENST00000531924 PPATQ06203 517 aa18.22■□□□□ 0.51
VPS28-215ENST00000531924 KIF22Q14807 665 aa18.22■□□□□ 0.51
VPS28-215ENST00000531924 ZSCAN29Q8IWY8 852 aaPredicted RBP18.22■□□□□ 0.51
VPS28-215ENST00000531924 FAM43AQ8N2R8 423 aa18.22■□□□□ 0.51
VPS28-215ENST00000531924 CLUAP1Q96AJ1 413 aa18.22■□□□□ 0.51
VPS28-215ENST00000531924 XAGE2Q96GT9 111 aa18.22■□□□□ 0.51
VPS28-215ENST00000531924 PTPN22Q9Y2R2 807 aa18.22■□□□□ 0.51
VPS28-215ENST00000531924 BCAR3O75815 825 aa18.21■□□□□ 0.51
VPS28-215ENST00000531924 NFIAQ12857 509 aa18.21■□□□□ 0.51
VPS28-215ENST00000531924 G3BP1Q13283 466 aaKnown RBP eCLIP18.21■□□□□ 0.51
VPS28-215ENST00000531924 MTX1Q13505 466 aa18.21■□□□□ 0.51
VPS28-215ENST00000531924 RASGRF1Q13972 1273 aa18.21■□□□□ 0.51
VPS28-215ENST00000531924 ZCCHC17Q9NP64 241 aaKnown RBP18.21■□□□□ 0.51
VPS28-215ENST00000531924 INPP5BP32019 993 aa18.2■□□□□ 0.5
VPS28-215ENST00000531924 GOLGA6L2Q8N9W4 650 aaPredicted RBP18.2■□□□□ 0.5
VPS28-215ENST00000531924 OTOFQ9HC10 1997 aa18.2■□□□□ 0.5
VPS28-215ENST00000531924 BTBD19C9JJ37 291 aa18.19■□□□□ 0.5
VPS28-215ENST00000531924 ZKSCAN2Q63HK3 967 aa18.19■□□□□ 0.5
VPS28-215ENST00000531924 ERICH6Q7L0X2 663 aa18.19■□□□□ 0.5
VPS28-215ENST00000531924 FAM198AQ9UFP1 575 aa18.19■□□□□ 0.5
VPS28-215ENST00000531924 PDS5AQ29RF7 1337 aaKnown RBP18.19■□□□□ 0.5
VPS28-215ENST00000531924 TLR2O60603 784 aa18.18■□□□□ 0.5
VPS28-215ENST00000531924 ENTPD3O75355 529 aa18.18■□□□□ 0.5
VPS28-215ENST00000531924 RGS3P49796 1198 aa18.18■□□□□ 0.5
VPS28-215ENST00000531924 HNRNPUQ00839 825 aaKnown RBP eCLIP18.18■□□□□ 0.5
VPS28-215ENST00000531924 NBPF11Q86T75 865 aa18.18■□□□□ 0.5
VPS28-215ENST00000531924 PICK1Q9NRD5 415 aa18.18■□□□□ 0.5
VPS28-215ENST00000531924 ZNF112Q9UJU3 913 aa18.18■□□□□ 0.5
VPS28-215ENST00000531924 TNRC18O15417 2968 aaPredicted RBP18.18■□□□□ 0.5
VPS28-215ENST00000531924 MYH13Q9UKX3 1938 aa18.17■□□□□ 0.5
VPS28-215ENST00000531924 ZBTB22O15209 634 aa18.17■□□□□ 0.5
VPS28-215ENST00000531924 BTDP43251 543 aa18.17■□□□□ 0.5
VPS28-215ENST00000531924 GSTO1P78417 241 aa18.17■□□□□ 0.5
VPS28-215ENST00000531924 OS9Q13438 667 aaPredicted RBP18.17■□□□□ 0.5
VPS28-215ENST00000531924 PICALMQ13492 652 aa18.17■□□□□ 0.5
VPS28-215ENST00000531924 FTSJ3Q8IY81 847 aaKnown RBP18.17■□□□□ 0.5
VPS28-215ENST00000531924 IDI2Q9BXS1 227 aa18.17■□□□□ 0.5
VPS28-215ENST00000531924 GAKO14976 1311 aa18.17■□□□□ 0.5
VPS28-215ENST00000531924 LDHCP07864 332 aa18.16■□□□□ 0.5
VPS28-215ENST00000531924 SLC9C1Q4G0N8 1177 aa18.16■□□□□ 0.5
VPS28-215ENST00000531924 ZFPM1Q8IX07 1006 aa18.16■□□□□ 0.5
VPS28-215ENST00000531924 TMEM106CQ9BVX2 250 aa18.16■□□□□ 0.5
VPS28-215ENST00000531924 TNNQ9UQP3 1299 aa18.16■□□□□ 0.5
VPS28-215ENST00000531924 LAMB1P07942 1786 aa18.15■□□□□ 0.5
VPS28-215ENST00000531924 PDHXO00330 501 aa18.15■□□□□ 0.5
VPS28-215ENST00000531924 MECOMQ03112 1051 aa18.15■□□□□ 0.5
VPS28-215ENST00000531924 NOL9Q5SY16 702 aaKnown RBP18.15■□□□□ 0.5
VPS28-215ENST00000531924 PRPF38BQ5VTL8 546 aaKnown RBP18.15■□□□□ 0.5
VPS28-215ENST00000531924 ANKRD23Q86SG2 305 aa18.15■□□□□ 0.5
VPS28-215ENST00000531924 TMEM57Q8N5G2 664 aa18.15■□□□□ 0.5
VPS28-215ENST00000531924 SPATA5Q8NB90 893 aa18.15■□□□□ 0.5
VPS28-215ENST00000531924 ARMC5Q96C12 935 aa18.15■□□□□ 0.5
VPS28-215ENST00000531924 FAM163AQ96GL9 167 aaPredicted RBP18.15■□□□□ 0.5
VPS28-215ENST00000531924 NOL10Q9BSC4 688 aaKnown RBP18.15■□□□□ 0.5
VPS28-215ENST00000531924 RAI14Q9P0K7 980 aa18.15■□□□□ 0.5
VPS28-215ENST00000531924 MROH7-TTC4A0A0A0MT08 1334 aa18.15■□□□□ 0.5
VPS28-215ENST00000531924 PNMA6EA0A0J9YXQ4 647 aa18.14■□□□□ 0.49
VPS28-215ENST00000531924 UQCRFS1P1P0C7P4 283 aa18.14■□□□□ 0.49
VPS28-215ENST00000531924 LACTBP83111 547 aaPredicted RBP18.14■□□□□ 0.49
VPS28-215ENST00000531924 HMG20BQ9P0W2 317 aa18.14■□□□□ 0.49
VPS28-215ENST00000531924 LRP2BPQ9P2M1 347 aa18.14■□□□□ 0.49
VPS28-215ENST00000531924 KCNH4Q9UQ05 1017 aa18.14■□□□□ 0.49
VPS28-215ENST00000531924 ZHX2Q9Y6X8 837 aa18.14■□□□□ 0.49
VPS28-215ENST00000531924 CXCL11O14625 94 aa18.13■□□□□ 0.49
Retrieved 100 of 20,778 RNA–protein pairs in 29.4 ms