RNA–Protein interactions for RNA: ENST00000527916.1

CPSF1-203, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 5

Gene CPSF1, Length 506 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-203ENST00000527916 CPA4Q9UI42 421 aa13.26□□□□□ -0.29
CPSF1-203ENST00000527916 SNCAIPQ9Y6H5 919 aa13.26□□□□□ -0.29
CPSF1-203ENST00000527916 ZSWIM8A7E2V4 1837 aa13.25□□□□□ -0.29
CPSF1-203ENST00000527916 PPATQ06203 517 aa13.25□□□□□ -0.29
CPSF1-203ENST00000527916 ANKRD23Q86SG2 305 aa13.25□□□□□ -0.29
CPSF1-203ENST00000527916 ZKSCAN4Q969J2 545 aaPredicted RBP13.25□□□□□ -0.29
CPSF1-203ENST00000527916 SRCIN1Q9C0H9 1055 aa13.25□□□□□ -0.29
CPSF1-203ENST00000527916 ARAP2Q8WZ64 1704 aa13.25□□□□□ -0.29
CPSF1-203ENST00000527916 PTPRCP08575 1304 aa13.24□□□□□ -0.29
CPSF1-203ENST00000527916 HDLBPQ00341 1268 aaKnown RBP13.24□□□□□ -0.29
CPSF1-203ENST00000527916 UBE4AQ14139 1066 aa13.24□□□□□ -0.29
CPSF1-203ENST00000527916 FAM83AQ86UY5 434 aa13.24□□□□□ -0.29
CPSF1-203ENST00000527916 VPS37DQ86XT2 251 aa13.24□□□□□ -0.29
CPSF1-203ENST00000527916 TRMT2AQ8IZ69 625 aaKnown RBP13.24□□□□□ -0.29
CPSF1-203ENST00000527916 MRPL50Q8N5N7 158 aaKnown RBP13.24□□□□□ -0.29
CPSF1-203ENST00000527916 SLAIN1Q8ND83 568 aa13.24□□□□□ -0.29
CPSF1-203ENST00000527916 U2AF1L4Q8WU68 220 aaKnown RBP13.24□□□□□ -0.29
CPSF1-203ENST00000527916 TEKT1Q969V4 418 aa13.24□□□□□ -0.29
CPSF1-203ENST00000527916 C9orf78Q9NZ63 289 aaPredicted RBP13.24□□□□□ -0.29
CPSF1-203ENST00000527916 UNC80Q8N2C7 3258 aa13.24□□□□□ -0.29
CPSF1-203ENST00000527916 UTYO14607 1347 aa13.23□□□□□ -0.29
CPSF1-203ENST00000527916 PDHXO00330 501 aa13.23□□□□□ -0.29
CPSF1-203ENST00000527916 SGPL1O95470 568 aa13.23□□□□□ -0.29
CPSF1-203ENST00000527916 GYG1P46976 350 aa13.23□□□□□ -0.29
CPSF1-203ENST00000527916 FCGRTP55899 365 aa13.23□□□□□ -0.29
CPSF1-203ENST00000527916 FKBP1CQ5VVH2 108 aa13.23□□□□□ -0.29
CPSF1-203ENST00000527916 LMBR1LQ6UX01 489 aa13.23□□□□□ -0.29
CPSF1-203ENST00000527916 GOLGA6L2Q8N9W4 650 aaPredicted RBP13.23□□□□□ -0.29
CPSF1-203ENST00000527916 TBC1D22AQ8WUA7 517 aa13.23□□□□□ -0.29
CPSF1-203ENST00000527916 ZNF341Q9BYN7 854 aa13.23□□□□□ -0.29
CPSF1-203ENST00000527916 A0A1B0GUL6 1792 aa13.22□□□□□ -0.29
CPSF1-203ENST00000527916 FRAT2O75474 233 aaPredicted RBP13.22□□□□□ -0.29
CPSF1-203ENST00000527916 CTGFP29279 349 aa13.22□□□□□ -0.29
CPSF1-203ENST00000527916 ALDH1L2Q3SY69 923 aa13.22□□□□□ -0.29
CPSF1-203ENST00000527916 GPR153Q6NV75 609 aa13.22□□□□□ -0.29
CPSF1-203ENST00000527916 SLC4A10Q6U841 1118 aa13.22□□□□□ -0.29
CPSF1-203ENST00000527916 FAM84BQ96KN1 310 aaPredicted RBP13.22□□□□□ -0.29
CPSF1-203ENST00000527916 PARK7Q99497 189 aaKnown RBP13.22□□□□□ -0.29
CPSF1-203ENST00000527916 SOX1O00570 391 aaPredicted RBP13.21□□□□□ -0.29
CPSF1-203ENST00000527916 TFRCP02786 760 aaKnown RBP13.21□□□□□ -0.29
CPSF1-203ENST00000527916 CT47B1P0C2W7 299 aaPredicted RBP13.21□□□□□ -0.29
CPSF1-203ENST00000527916 CACNB3P54284 484 aa13.21□□□□□ -0.29
CPSF1-203ENST00000527916 PRKCZQ05513 592 aa13.21□□□□□ -0.29
CPSF1-203ENST00000527916 EPHA10Q5JZY3 1008 aa13.21□□□□□ -0.29
CPSF1-203ENST00000527916 SSH1Q8WYL5 1049 aa13.21□□□□□ -0.29
CPSF1-203ENST00000527916 LRCH3Q96II8 777 aa13.21□□□□□ -0.29
CPSF1-203ENST00000527916 ZNF594Q96JF6 807 aaPredicted RBP13.21□□□□□ -0.29
CPSF1-203ENST00000527916 UNC93B1Q9H1C4 597 aa13.21□□□□□ -0.29
CPSF1-203ENST00000527916 STAP2Q9UGK3 403 aa13.21□□□□□ -0.29
CPSF1-203ENST00000527916 MAST3O60307 1309 aa13.2□□□□□ -0.3
CPSF1-203ENST00000527916 CHAF1AQ13111 956 aaPredicted RBP13.2□□□□□ -0.3
CPSF1-203ENST00000527916 CDCA7LQ96GN5 454 aa13.2□□□□□ -0.3
CPSF1-203ENST00000527916 KAZALD1Q96I82 304 aa13.2□□□□□ -0.3
CPSF1-203ENST00000527916 ZDHHC15Q96MV8 337 aa13.2□□□□□ -0.3
CPSF1-203ENST00000527916 MRIQ9BWK5 157 aa13.2□□□□□ -0.3
CPSF1-203ENST00000527916 KCNH4Q9UQ05 1017 aa13.2□□□□□ -0.3
CPSF1-203ENST00000527916 RPAP1Q9BWH6 1393 aaPredicted RBP13.2□□□□□ -0.3
CPSF1-203ENST00000527916 ADGRA2Q96PE1 1338 aa13.19□□□□□ -0.3
CPSF1-203ENST00000527916 ADCY3O60266 1144 aa13.19□□□□□ -0.3
CPSF1-203ENST00000527916 NBPF7P0C2Y1 421 aaPredicted RBP13.19□□□□□ -0.3
CPSF1-203ENST00000527916 RABL6Q3YEC7 729 aaPredicted RBP13.19□□□□□ -0.3
CPSF1-203ENST00000527916 CAVIN4Q5BKX8 364 aa13.19□□□□□ -0.3
CPSF1-203ENST00000527916 MIGA2Q7L4E1 593 aa13.19□□□□□ -0.3
CPSF1-203ENST00000527916 DEFB123Q8N688 67 aa13.19□□□□□ -0.3
CPSF1-203ENST00000527916 SUCLG2Q96I99 432 aa13.19□□□□□ -0.3
CPSF1-203ENST00000527916 BCRP11274 1271 aa13.18□□□□□ -0.3
CPSF1-203ENST00000527916 INPP5BP32019 993 aa13.18□□□□□ -0.3
CPSF1-203ENST00000527916 BMP8BP34820 402 aa13.18□□□□□ -0.3
CPSF1-203ENST00000527916 NECAB2Q7Z6G3 386 aa13.18□□□□□ -0.3
CPSF1-203ENST00000527916 PXYLP1Q8TE99 480 aa13.18□□□□□ -0.3
CPSF1-203ENST00000527916 DEFB118Q96PH6 123 aa13.18□□□□□ -0.3
CPSF1-203ENST00000527916 IQSEC3Q9UPP2 1182 aaPredicted RBP13.18□□□□□ -0.3
CPSF1-203ENST00000527916 SUGT1Q9Y2Z0 365 aa13.18□□□□□ -0.3
CPSF1-203ENST00000527916 AK9Q5TCS8 1911 aa13.17□□□□□ -0.3
CPSF1-203ENST00000527916 MROH5Q6ZUA9 1318 aa13.17□□□□□ -0.3
CPSF1-203ENST00000527916 LAMA2P24043 3122 aaKnown RBP13.17□□□□□ -0.3
CPSF1-203ENST00000527916 CXCL11O14625 94 aa13.17□□□□□ -0.3
CPSF1-203ENST00000527916 INHAP05111 366 aa13.17□□□□□ -0.3
CPSF1-203ENST00000527916 FLT3LGP49771 235 aa13.17□□□□□ -0.3
CPSF1-203ENST00000527916 GRIK5Q16478 980 aa13.17□□□□□ -0.3
CPSF1-203ENST00000527916 APOBEC3HQ6NTF7 200 aaKnown RBP13.17□□□□□ -0.3
CPSF1-203ENST00000527916 HHIPL2Q6UWX4 724 aa13.17□□□□□ -0.3
CPSF1-203ENST00000527916 FASTKD5Q7L8L6 764 aaKnown RBP13.17□□□□□ -0.3
CPSF1-203ENST00000527916 FBXO33Q7Z6M2 555 aa13.17□□□□□ -0.3
CPSF1-203ENST00000527916 USP44Q9H0E7 712 aa13.17□□□□□ -0.3
CPSF1-203ENST00000527916 ZNF112Q9UJU3 913 aa13.17□□□□□ -0.3
CPSF1-203ENST00000527916 GABRQQ9UN88 632 aa13.17□□□□□ -0.3
CPSF1-203ENST00000527916 STXBP5LQ9Y2K9 1186 aa13.17□□□□□ -0.3
CPSF1-203ENST00000527916 MGAMO43451 1857 aa13.16□□□□□ -0.3
CPSF1-203ENST00000527916 TNPO2O14787 897 aaKnown RBP13.16□□□□□ -0.3
CPSF1-203ENST00000527916 CYP2C8P10632 490 aa13.16□□□□□ -0.3
CPSF1-203ENST00000527916 ELNP15502 786 aa13.16□□□□□ -0.3
CPSF1-203ENST00000527916 IRF5Q13568 498 aa13.16□□□□□ -0.3
CPSF1-203ENST00000527916 MOGSQ13724 837 aa13.16□□□□□ -0.3
CPSF1-203ENST00000527916 FAM151AQ8WW52 585 aa13.16□□□□□ -0.3
CPSF1-203ENST00000527916 PAWRQ96IZ0 340 aaKnown RBP13.16□□□□□ -0.3
CPSF1-203ENST00000527916 GDF15Q99988 308 aa13.16□□□□□ -0.3
CPSF1-203ENST00000527916 BCAMP50895 628 aa13.15□□□□□ -0.3
CPSF1-203ENST00000527916 NOL9Q5SY16 702 aaKnown RBP13.15□□□□□ -0.3
CPSF1-203ENST00000527916 CRISPLD2Q9H0B8 497 aa13.15□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 14.4 ms