RNA–Protein interactions for RNA: ENST00000526271.2

CPSF1-201, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 3

Gene CPSF1, Length 697 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-201ENST00000526271 ZNF112Q9UJU3 913 aa17.96■□□□□ 0.47
CPSF1-201ENST00000526271 DAGLAQ9Y4D2 1042 aa17.96■□□□□ 0.47
CPSF1-201ENST00000526271 CSADQ9Y600 493 aa17.96■□□□□ 0.47
CPSF1-201ENST00000526271 MGAMO43451 1857 aa17.96■□□□□ 0.47
CPSF1-201ENST00000526271 AK9Q5TCS8 1911 aa17.96■□□□□ 0.47
CPSF1-201ENST00000526271 EYA2O00167 538 aa17.95■□□□□ 0.46
CPSF1-201ENST00000526271 MYCP01106 439 aaPredicted RBP17.95■□□□□ 0.46
CPSF1-201ENST00000526271 PRDX5P30044 214 aa17.95■□□□□ 0.46
CPSF1-201ENST00000526271 LACTBP83111 547 aaPredicted RBP17.95■□□□□ 0.46
CPSF1-201ENST00000526271 PPIL2Q13356 520 aa17.95■□□□□ 0.46
CPSF1-201ENST00000526271 CDC42EP5Q6NZY7 148 aa17.95■□□□□ 0.46
CPSF1-201ENST00000526271 C17orf99Q6UX52 265 aa17.95■□□□□ 0.46
CPSF1-201ENST00000526271 VPS37DQ86XT2 251 aa17.95■□□□□ 0.46
CPSF1-201ENST00000526271 SHISA4Q96DD7 197 aa17.95■□□□□ 0.46
CPSF1-201ENST00000526271 MYH2Q9UKX2 1941 aa17.95■□□□□ 0.46
CPSF1-201ENST00000526271 DOCK2Q92608 1830 aa17.95■□□□□ 0.46
CPSF1-201ENST00000526271 ECM2O94769 699 aaPredicted RBP17.94■□□□□ 0.46
CPSF1-201ENST00000526271 FXR1P51114 621 aaKnown RBP eCLIP17.94■□□□□ 0.46
CPSF1-201ENST00000526271 PUM3Q15397 648 aaKnown RBP17.94■□□□□ 0.46
CPSF1-201ENST00000526271 CAVIN4Q5BKX8 364 aa17.94■□□□□ 0.46
CPSF1-201ENST00000526271 PTPRCP08575 1304 aa17.94■□□□□ 0.46
CPSF1-201ENST00000526271 RFX7Q2KHR2 1363 aa17.93■□□□□ 0.46
CPSF1-201ENST00000526271 DOCK3Q8IZD9 2030 aa17.93■□□□□ 0.46
CPSF1-201ENST00000526271 CETPP11597 493 aa17.93■□□□□ 0.46
CPSF1-201ENST00000526271 MTFR1Q15390 333 aa17.93■□□□□ 0.46
CPSF1-201ENST00000526271 GOLGA6L2Q8N9W4 650 aaPredicted RBP17.93■□□□□ 0.46
CPSF1-201ENST00000526271 CDCA7LQ96GN5 454 aa17.93■□□□□ 0.46
CPSF1-201ENST00000526271 KCNH4Q9UQ05 1017 aa17.93■□□□□ 0.46
CPSF1-201ENST00000526271 SUGT1Q9Y2Z0 365 aa17.93■□□□□ 0.46
CPSF1-201ENST00000526271 SLFN5Q08AF3 891 aa17.92■□□□□ 0.46
CPSF1-201ENST00000526271 TCP10Q12799 353 aa17.92■□□□□ 0.46
CPSF1-201ENST00000526271 SLC9C1Q4G0N8 1177 aa17.92■□□□□ 0.46
CPSF1-201ENST00000526271 GPAT2Q6NUI2 795 aa17.92■□□□□ 0.46
CPSF1-201ENST00000526271 SH3BP5LQ7L8J4 393 aa17.92■□□□□ 0.46
CPSF1-201ENST00000526271 TRIM47Q96LD4 638 aa17.92■□□□□ 0.46
CPSF1-201ENST00000526271 ZCCHC17Q9NP64 241 aaKnown RBP17.92■□□□□ 0.46
CPSF1-201ENST00000526271 CPA4Q9UI42 421 aa17.92■□□□□ 0.46
CPSF1-201ENST00000526271 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP17.92■□□□□ 0.46
CPSF1-201ENST00000526271 FRAT2O75474 233 aaPredicted RBP17.91■□□□□ 0.46
CPSF1-201ENST00000526271 SNAPC2Q13487 334 aa17.91■□□□□ 0.46
CPSF1-201ENST00000526271 FAM151AQ8WW52 585 aa17.91■□□□□ 0.46
CPSF1-201ENST00000526271 LPIN2Q92539 896 aa17.91■□□□□ 0.46
CPSF1-201ENST00000526271 ZNF341Q9BYN7 854 aa17.91■□□□□ 0.46
CPSF1-201ENST00000526271 PHF20L1A8MW92 1017 aa17.9■□□□□ 0.46
CPSF1-201ENST00000526271 IFIT1P09914 478 aaKnown RBP17.9■□□□□ 0.46
CPSF1-201ENST00000526271 ADORA1P30542 326 aa17.9■□□□□ 0.46
CPSF1-201ENST00000526271 PHKA1P46020 1223 aa17.9■□□□□ 0.46
CPSF1-201ENST00000526271 PPATQ06203 517 aa17.9■□□□□ 0.46
CPSF1-201ENST00000526271 PA2G4Q9UQ80 394 aaKnown RBP17.9■□□□□ 0.46
CPSF1-201ENST00000526271 COLQQ9Y215 455 aaPredicted RBP17.9■□□□□ 0.46
CPSF1-201ENST00000526271 NOL9Q5SY16 702 aaKnown RBP17.89■□□□□ 0.45
CPSF1-201ENST00000526271 UBE2Q1Q7Z7E8 422 aa17.89■□□□□ 0.45
CPSF1-201ENST00000526271 TRMT2AQ8IZ69 625 aaKnown RBP17.89■□□□□ 0.45
CPSF1-201ENST00000526271 ZNF384Q8TF68 577 aa17.89■□□□□ 0.45
CPSF1-201ENST00000526271 GCC1Q96CN9 775 aa17.89■□□□□ 0.45
CPSF1-201ENST00000526271 TMEM106CQ9BVX2 250 aa17.89■□□□□ 0.45
CPSF1-201ENST00000526271 SIL1Q9H173 461 aa17.89■□□□□ 0.45
CPSF1-201ENST00000526271 MAST3O60307 1309 aa17.89■□□□□ 0.45
CPSF1-201ENST00000526271 PDHXO00330 501 aa17.88■□□□□ 0.45
CPSF1-201ENST00000526271 BCRP11274 1271 aa17.88■□□□□ 0.45
CPSF1-201ENST00000526271 SLC5A1P13866 664 aa17.88■□□□□ 0.45
CPSF1-201ENST00000526271 OSBPP22059 807 aa17.88■□□□□ 0.45
CPSF1-201ENST00000526271 ANKRD23Q86SG2 305 aa17.88■□□□□ 0.45
CPSF1-201ENST00000526271 WDR66Q8TBY9 1149 aa17.88■□□□□ 0.45
CPSF1-201ENST00000526271 TMOD2Q9NZR1 351 aa17.88■□□□□ 0.45
CPSF1-201ENST00000526271 FRMD4AQ9P2Q2 1039 aaPredicted RBP17.88■□□□□ 0.45
CPSF1-201ENST00000526271 DOCK1Q14185 1865 aa17.88■□□□□ 0.45
CPSF1-201ENST00000526271 LAMA3Q16787 3333 aa17.87■□□□□ 0.45
CPSF1-201ENST00000526271 H0YGN5 161 aa17.87■□□□□ 0.45
CPSF1-201ENST00000526271 DCAF15Q66K64 600 aa17.87■□□□□ 0.45
CPSF1-201ENST00000526271 DDX4Q9NQI0 724 aaKnown RBP17.87■□□□□ 0.45
CPSF1-201ENST00000526271 SRRDQ9UH36 339 aa17.87■□□□□ 0.45
CPSF1-201ENST00000526271 ALPK3Q96L96 1907 aa17.87■□□□□ 0.45
CPSF1-201ENST00000526271 GAKO14976 1311 aa17.87■□□□□ 0.45
CPSF1-201ENST00000526271 SALL1Q9NSC2 1324 aa17.87■□□□□ 0.45
CPSF1-201ENST00000526271 CYP2C8P10632 490 aa17.86■□□□□ 0.45
CPSF1-201ENST00000526271 PSMC4P43686 418 aa17.86■□□□□ 0.45
CPSF1-201ENST00000526271 SLC4A8Q2Y0W8 1093 aa17.86■□□□□ 0.45
CPSF1-201ENST00000526271 USP40Q9NVE5 1235 aa17.86■□□□□ 0.45
CPSF1-201ENST00000526271 DDTLA6NHG4 134 aaPredicted RBP17.85■□□□□ 0.45
CPSF1-201ENST00000526271 E9PSI1 815 aa17.85■□□□□ 0.45
CPSF1-201ENST00000526271 SIPA1L1O43166 1804 aa17.85■□□□□ 0.45
CPSF1-201ENST00000526271 WDHD1O75717 1129 aaPredicted RBP17.85■□□□□ 0.45
CPSF1-201ENST00000526271 CIAO1O76071 339 aa17.85■□□□□ 0.45
CPSF1-201ENST00000526271 MAP3K10Q02779 954 aa17.85■□□□□ 0.45
CPSF1-201ENST00000526271 ATP2B3Q16720 1220 aa17.85■□□□□ 0.45
CPSF1-201ENST00000526271 CCDC84Q86UT8 332 aaPredicted RBP17.85■□□□□ 0.45
CPSF1-201ENST00000526271 GABRQQ9UN88 632 aa17.85■□□□□ 0.45
CPSF1-201ENST00000526271 LRRFIP2Q9Y608 721 aaKnown RBP17.85■□□□□ 0.45
CPSF1-201ENST00000526271 ZBTB22O15209 634 aa17.84■□□□□ 0.45
CPSF1-201ENST00000526271 RGS3P49796 1198 aa17.84■□□□□ 0.45
CPSF1-201ENST00000526271 PRKCZQ05513 592 aa17.84■□□□□ 0.45
CPSF1-201ENST00000526271 ALDH1L2Q3SY69 923 aa17.84■□□□□ 0.45
CPSF1-201ENST00000526271 NBPF11Q86T75 865 aa17.84■□□□□ 0.45
CPSF1-201ENST00000526271 MEIS3Q99687 375 aa17.84■□□□□ 0.45
CPSF1-201ENST00000526271 RASGRF1Q13972 1273 aa17.83■□□□□ 0.44
CPSF1-201ENST00000526271 CCDC102BQ68D86 513 aa17.83■□□□□ 0.44
CPSF1-201ENST00000526271 IDI2Q9BXS1 227 aa17.83■□□□□ 0.44
CPSF1-201ENST00000526271 ATAD5Q96QE3 1844 aa17.82■□□□□ 0.44
CPSF1-201ENST00000526271 MYPNQ86TC9 1320 aa17.82■□□□□ 0.44
Retrieved 100 of 20,778 RNA–protein pairs in 13.5 ms