RNA–Protein interactions for RNA: ENST00000526054.5

VPS28-204, Transcript of VPS28, ESCRT-I subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS28, Length 892 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-204ENST00000526054 SIL1Q9H173 461 aa12.52□□□□□ -0.41
VPS28-204ENST00000526054 CENPFP49454 3210 aa12.52□□□□□ -0.41
VPS28-204ENST00000526054 PNMA6EA0A0J9YXQ4 647 aa12.51□□□□□ -0.41
VPS28-204ENST00000526054 TESPA1A2RU30 521 aaPredicted RBP12.51□□□□□ -0.41
VPS28-204ENST00000526054 HMMRO75330 724 aa12.51□□□□□ -0.41
VPS28-204ENST00000526054 SLC5A1P13866 664 aa12.51□□□□□ -0.41
VPS28-204ENST00000526054 FGFR2P21802 821 aa12.51□□□□□ -0.41
VPS28-204ENST00000526054 IL15P40933 162 aaPredicted RBP12.51□□□□□ -0.41
VPS28-204ENST00000526054 MAP3K9P80192 1104 aa12.51□□□□□ -0.41
VPS28-204ENST00000526054 POLA2Q14181 598 aa12.51□□□□□ -0.41
VPS28-204ENST00000526054 CEP85Q6P2H3 762 aa12.51□□□□□ -0.41
VPS28-204ENST00000526054 CD99L2Q8TCZ2 262 aa12.51□□□□□ -0.41
VPS28-204ENST00000526054 CNKSR2Q8WXI2 1034 aa12.51□□□□□ -0.41
VPS28-204ENST00000526054 OTUD5Q96G74 571 aa12.51□□□□□ -0.41
VPS28-204ENST00000526054 ZDHHC15Q96MV8 337 aa12.51□□□□□ -0.41
VPS28-204ENST00000526054 PTPN18Q99952 460 aa12.51□□□□□ -0.41
VPS28-204ENST00000526054 PA2G4Q9UQ80 394 aaKnown RBP12.51□□□□□ -0.41
VPS28-204ENST00000526054 SUGT1Q9Y2Z0 365 aa12.51□□□□□ -0.41
VPS28-204ENST00000526054 SUPT16HQ9Y5B9 1047 aaKnown RBP12.51□□□□□ -0.41
VPS28-204ENST00000526054 RPAP1Q9BWH6 1393 aaPredicted RBP12.51□□□□□ -0.41
VPS28-204ENST00000526054 CCL15-CCL14A0A0B4J2E2 113 aa12.5□□□□□ -0.41
VPS28-204ENST00000526054 GTF2A2P52657 109 aa12.5□□□□□ -0.41
VPS28-204ENST00000526054 CCL15Q16663 113 aa12.5□□□□□ -0.41
VPS28-204ENST00000526054 PRPF38BQ5VTL8 546 aaKnown RBP12.5□□□□□ -0.41
VPS28-204ENST00000526054 RPAP2Q8IXW5 612 aaPredicted RBP12.5□□□□□ -0.41
VPS28-204ENST00000526054 SSH3Q8TE77 659 aa12.5□□□□□ -0.41
VPS28-204ENST00000526054 BRI3BPQ8WY22 251 aa12.5□□□□□ -0.41
VPS28-204ENST00000526054 LPIN2Q92539 896 aa12.5□□□□□ -0.41
VPS28-204ENST00000526054 HOOK2Q96ED9 719 aa12.5□□□□□ -0.41
VPS28-204ENST00000526054 MS4A4AQ96JQ5 239 aa12.5□□□□□ -0.41
VPS28-204ENST00000526054 WRNIP1Q96S55 665 aa12.5□□□□□ -0.41
VPS28-204ENST00000526054 SPDYE5A6NIY4 337 aa12.49□□□□□ -0.41
VPS28-204ENST00000526054 SP3Q02447 781 aa12.49□□□□□ -0.41
VPS28-204ENST00000526054 G3BP1Q13283 466 aaKnown RBP eCLIP12.49□□□□□ -0.41
VPS28-204ENST00000526054 OS9Q13438 667 aaPredicted RBP12.49□□□□□ -0.41
VPS28-204ENST00000526054 TAF1CQ15572 869 aaPredicted RBP12.49□□□□□ -0.41
VPS28-204ENST00000526054 APOBEC3HQ6NTF7 200 aaKnown RBP12.49□□□□□ -0.41
VPS28-204ENST00000526054 ATG9AQ7Z3C6 839 aa12.49□□□□□ -0.41
VPS28-204ENST00000526054 FAM83AQ86UY5 434 aa12.49□□□□□ -0.41
VPS28-204ENST00000526054 WDR66Q8TBY9 1149 aa12.49□□□□□ -0.41
VPS28-204ENST00000526054 CRBNQ96SW2 442 aa12.49□□□□□ -0.41
VPS28-204ENST00000526054 MRIQ9BWK5 157 aa12.49□□□□□ -0.41
VPS28-204ENST00000526054 EFCC1Q9HA90 598 aa12.49□□□□□ -0.41
VPS28-204ENST00000526054 CEP126Q9P2H0 1117 aa12.49□□□□□ -0.41
VPS28-204ENST00000526054 PTPN22Q9Y2R2 807 aa12.49□□□□□ -0.41
VPS28-204ENST00000526054 SNCAIPQ9Y6H5 919 aa12.49□□□□□ -0.41
VPS28-204ENST00000526054 AK9Q5TCS8 1911 aa12.49□□□□□ -0.41
VPS28-204ENST00000526054 DOCK2Q92608 1830 aa12.48□□□□□ -0.41
VPS28-204ENST00000526054 ATP2B3Q16720 1220 aa12.48□□□□□ -0.41
VPS28-204ENST00000526054 FKBP1CQ5VVH2 108 aa12.48□□□□□ -0.41
VPS28-204ENST00000526054 DCAF15Q66K64 600 aa12.48□□□□□ -0.41
VPS28-204ENST00000526054 HHIPL2Q6UWX4 724 aa12.48□□□□□ -0.41
VPS28-204ENST00000526054 FAM43AQ8N2R8 423 aa12.48□□□□□ -0.41
VPS28-204ENST00000526054 ZFYVE28Q9HCC9 887 aa12.48□□□□□ -0.41
VPS28-204ENST00000526054 BRCA2P51587 3418 aa12.48□□□□□ -0.41
VPS28-204ENST00000526054 ZSWIM8A7E2V4 1837 aa12.48□□□□□ -0.41
VPS28-204ENST00000526054 SURF6O75683 361 aaKnown RBP12.47□□□□□ -0.41
VPS28-204ENST00000526054 WDHD1O75717 1129 aaPredicted RBP12.47□□□□□ -0.41
VPS28-204ENST00000526054 AAMPQ13685 434 aa12.47□□□□□ -0.41
VPS28-204ENST00000526054 ERO1BQ86YB8 467 aa12.47□□□□□ -0.41
VPS28-204ENST00000526054 CETPP11597 493 aa12.46□□□□□ -0.41
VPS28-204ENST00000526054 PRDX5P30044 214 aa12.46□□□□□ -0.41
VPS28-204ENST00000526054 SNAPC2Q13487 334 aa12.46□□□□□ -0.41
VPS28-204ENST00000526054 ARHGEF6Q15052 776 aa12.46□□□□□ -0.41
VPS28-204ENST00000526054 DIXDC1Q155Q3 683 aa12.46□□□□□ -0.41
VPS28-204ENST00000526054 HSP90AB4PQ58FF6 505 aa12.46□□□□□ -0.41
VPS28-204ENST00000526054 ZKSCAN4Q969J2 545 aaPredicted RBP12.46□□□□□ -0.41
VPS28-204ENST00000526054 ZNF341Q9BYN7 854 aa12.46□□□□□ -0.41
VPS28-204ENST00000526054 GNL3LQ9NVN8 582 aaKnown RBP12.46□□□□□ -0.41
VPS28-204ENST00000526054 AKAP2Q9Y2D5 859 aa12.46□□□□□ -0.41
VPS28-204ENST00000526054 NOP58Q9Y2X3 529 aaKnown RBP12.46□□□□□ -0.41
VPS28-204ENST00000526054 DAGLAQ9Y4D2 1042 aa12.46□□□□□ -0.41
VPS28-204ENST00000526054 MYH2Q9UKX2 1941 aa12.46□□□□□ -0.42
VPS28-204ENST00000526054 POTEFA5A3E0 1075 aa12.45□□□□□ -0.42
VPS28-204ENST00000526054 IRF6O14896 467 aa12.45□□□□□ -0.42
VPS28-204ENST00000526054 LDHBP07195 334 aaKnown RBP12.45□□□□□ -0.42
VPS28-204ENST00000526054 CAP1Q01518 475 aa12.45□□□□□ -0.42
VPS28-204ENST00000526054 TFCP2Q12800 502 aa12.45□□□□□ -0.42
VPS28-204ENST00000526054 PPIL2Q13356 520 aa12.45□□□□□ -0.42
VPS28-204ENST00000526054 MIGA2Q7L4E1 593 aa12.45□□□□□ -0.42
VPS28-204ENST00000526054 ERC1Q8IUD2 1116 aa12.45□□□□□ -0.42
VPS28-204ENST00000526054 ARMC5Q96C12 935 aa12.45□□□□□ -0.42
VPS28-204ENST00000526054 ZCCHC17Q9NP64 241 aaKnown RBP12.45□□□□□ -0.42
VPS28-204ENST00000526054 SALL1Q9NSC2 1324 aa12.44□□□□□ -0.42
VPS28-204ENST00000526054 SEMA3EO15041 775 aa12.44□□□□□ -0.42
VPS28-204ENST00000526054 INPP5BP32019 993 aa12.44□□□□□ -0.42
VPS28-204ENST00000526054 TCP10Q12799 353 aa12.44□□□□□ -0.42
VPS28-204ENST00000526054 SLC9C1Q4G0N8 1177 aa12.44□□□□□ -0.42
VPS28-204ENST00000526054 CDC42EP5Q6NZY7 148 aa12.44□□□□□ -0.42
VPS28-204ENST00000526054 FAM151AQ8WW52 585 aa12.44□□□□□ -0.42
VPS28-204ENST00000526054 DENND2AQ9ULE3 1009 aa12.44□□□□□ -0.42
VPS28-204ENST00000526054 EXOC6BQ9Y2D4 811 aa12.44□□□□□ -0.42
VPS28-204ENST00000526054 KIAA0100Q14667 2235 aaKnown RBP12.43□□□□□ -0.42
VPS28-204ENST00000526054 BTBD19C9JJ37 291 aa12.43□□□□□ -0.42
VPS28-204ENST00000526054 TLR2O60603 784 aa12.43□□□□□ -0.42
VPS28-204ENST00000526054 PHKA1P46020 1223 aa12.43□□□□□ -0.42
VPS28-204ENST00000526054 PPATQ06203 517 aa12.43□□□□□ -0.42
VPS28-204ENST00000526054 NFIAQ12857 509 aa12.43□□□□□ -0.42
VPS28-204ENST00000526054 KIF22Q14807 665 aa12.43□□□□□ -0.42
VPS28-204ENST00000526054 SIRT2Q8IXJ6 389 aa12.43□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 71 ms