RNA–Protein interactions for RNA: ENST00000515847.1

LIMCH1-222, Transcript of LIM and calponin homology domains 1, human

TSL 4

Gene LIMCH1, Length 490 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
LIMCH1-222	ENST00000515847	DBNDD2	Q9BQY9	259 aa		9.42	□□□□□ -0.9
LIMCH1-222	ENST00000515847	DDX24	Q9GZR7	859 aa	Known RBP eCLIP	9.42	□□□□□ -0.9
LIMCH1-222	ENST00000515847	CCDC8	Q9H0W5	538 aa	Predicted RBP	9.42	□□□□□ -0.9
LIMCH1-222	ENST00000515847	MYOZ2	Q9NPC6	264 aa		9.42	□□□□□ -0.9
LIMCH1-222	ENST00000515847	TMOD2	Q9NZR1	351 aa		9.42	□□□□□ -0.9
LIMCH1-222	ENST00000515847	DBNL	Q9UJU6	430 aa	Known RBP	9.42	□□□□□ -0.9
LIMCH1-222	ENST00000515847	CEP350	Q5VT06	3117 aa		9.41	□□□□□ -0.9
LIMCH1-222	ENST00000515847	ASTN2	O75129	1339 aa	Predicted RBP	9.41	□□□□□ -0.9
LIMCH1-222	ENST00000515847	LDHC	P07864	332 aa		9.41	□□□□□ -0.9
LIMCH1-222	ENST00000515847	MX1	P20591	662 aa		9.41	□□□□□ -0.9
LIMCH1-222	ENST00000515847	MAP3K12	Q12852	859 aa		9.41	□□□□□ -0.9
LIMCH1-222	ENST00000515847	TNFAIP1	Q13829	316 aa		9.41	□□□□□ -0.9
LIMCH1-222	ENST00000515847	PI16	Q6UXB8	463 aa		9.41	□□□□□ -0.9
LIMCH1-222	ENST00000515847	ERICH6	Q7L0X2	663 aa		9.41	□□□□□ -0.9
LIMCH1-222	ENST00000515847	CHD1L	Q86WJ1	897 aa		9.41	□□□□□ -0.9
LIMCH1-222	ENST00000515847	TICAM2	Q86XR7	235 aa		9.41	□□□□□ -0.9
LIMCH1-222	ENST00000515847	ZC3H15	Q8WU90	426 aa	Known RBP	9.41	□□□□□ -0.9
LIMCH1-222	ENST00000515847	BCL11A	Q9H165	835 aa		9.41	□□□□□ -0.9
LIMCH1-222	ENST00000515847	SERPINA10	Q9UK55	444 aa		9.41	□□□□□ -0.9
LIMCH1-222	ENST00000515847	TTF2	Q9UNY4	1162 aa	Known RBP	9.41	□□□□□ -0.9
LIMCH1-222	ENST00000515847	AKAP11	Q9UKA4	1901 aa		9.41	□□□□□ -0.9
LIMCH1-222	ENST00000515847	SMARCA5	O60264	1052 aa	Predicted RBP	9.4	□□□□□ -0.9
LIMCH1-222	ENST00000515847	MAP4K4	O95819	1239 aa	Predicted RBP	9.4	□□□□□ -0.9
LIMCH1-222	ENST00000515847	ATP5J	P18859	108 aa		9.4	□□□□□ -0.9
LIMCH1-222	ENST00000515847	MCAM	P43121	646 aa		9.4	□□□□□ -0.9
LIMCH1-222	ENST00000515847	NUCB1	Q02818	461 aa		9.4	□□□□□ -0.9
LIMCH1-222	ENST00000515847	PDAP1	Q13442	181 aa	Known RBP	9.4	□□□□□ -0.9
LIMCH1-222	ENST00000515847	SCARF1	Q14162	830 aa		9.4	□□□□□ -0.9
LIMCH1-222	ENST00000515847	DLGAP5	Q15398	846 aa		9.4	□□□□□ -0.9
LIMCH1-222	ENST00000515847	NBPF9	Q3BBW0	867 aa		9.4	□□□□□ -0.9
LIMCH1-222	ENST00000515847	CFAP100	Q494V2	611 aa		9.4	□□□□□ -0.9
LIMCH1-222	ENST00000515847	CNTROB	Q8N137	903 aa		9.4	□□□□□ -0.9
LIMCH1-222	ENST00000515847	PDCD7	Q8N8D1	485 aa	Known RBP	9.4	□□□□□ -0.9
LIMCH1-222	ENST00000515847	TEKT1	Q969V4	418 aa		9.4	□□□□□ -0.9
LIMCH1-222	ENST00000515847	PPP4R2	Q9NY27	417 aa		9.4	□□□□□ -0.9
LIMCH1-222	ENST00000515847	GGA3	Q9NZ52	723 aa		9.4	□□□□□ -0.9
LIMCH1-222	ENST00000515847	HMG20B	Q9P0W2	317 aa		9.4	□□□□□ -0.9
LIMCH1-222	ENST00000515847	PCDH10	Q9P2E7	1040 aa		9.4	□□□□□ -0.9
LIMCH1-222	ENST00000515847	LRP2BP	Q9P2M1	347 aa		9.4	□□□□□ -0.9
LIMCH1-222	ENST00000515847	ABCF2	Q9UG63	623 aa		9.4	□□□□□ -0.9
LIMCH1-222	ENST00000515847	PGAP2	Q9UHJ9	254 aa		9.4	□□□□□ -0.9
LIMCH1-222	ENST00000515847	PCDHAC2	Q9Y5I4	1007 aa		9.4	□□□□□ -0.9
LIMCH1-222	ENST00000515847	ECM29	Q5VYK3	1845 aa		9.4	□□□□□ -0.91
LIMCH1-222	ENST00000515847	POLR2A	P24928	1970 aa	Known RBP	9.39	□□□□□ -0.91
LIMCH1-222	ENST00000515847	PASK	Q96RG2	1323 aa		9.39	□□□□□ -0.91
LIMCH1-222	ENST00000515847	WNT10B	O00744	389 aa		9.39	□□□□□ -0.91
LIMCH1-222	ENST00000515847	BAG3	O95817	575 aa		9.39	□□□□□ -0.91
LIMCH1-222	ENST00000515847	ITGBL1	O95965	494 aa	Predicted RBP	9.39	□□□□□ -0.91
LIMCH1-222	ENST00000515847	PRDX5	P30044	214 aa		9.39	□□□□□ -0.91
LIMCH1-222	ENST00000515847	RBM5	P52756	815 aa	Known RBP eCLIP	9.39	□□□□□ -0.91
LIMCH1-222	ENST00000515847	ANGEL2	Q5VTE6	544 aa	Known RBP	9.39	□□□□□ -0.91
LIMCH1-222	ENST00000515847	APOBEC3F	Q8IUX4	373 aa	Known RBP	9.39	□□□□□ -0.91
LIMCH1-222	ENST00000515847	ZBED3	Q96IU2	234 aa	Predicted RBP	9.39	□□□□□ -0.91
LIMCH1-222	ENST00000515847	DNAJC2	Q99543	621 aa	Known RBP	9.39	□□□□□ -0.91
LIMCH1-222	ENST00000515847	MRI	Q9BWK5	157 aa		9.39	□□□□□ -0.91
LIMCH1-222	ENST00000515847	GLIS2	Q9BZE0	524 aa	Predicted RBP	9.39	□□□□□ -0.91
LIMCH1-222	ENST00000515847	RAI14	Q9P0K7	980 aa		9.39	□□□□□ -0.91
LIMCH1-222	ENST00000515847	RFX7	Q2KHR2	1363 aa		9.38	□□□□□ -0.91
LIMCH1-222	ENST00000515847	PITPNM2	Q9BZ72	1349 aa		9.38	□□□□□ -0.91
LIMCH1-222	ENST00000515847	MAST2	Q6P0Q8	1798 aa		9.38	□□□□□ -0.91
LIMCH1-222	ENST00000515847	ADM5	C9JUS6	153 aa		9.38	□□□□□ -0.91
LIMCH1-222	ENST00000515847	TRAF5	O00463	557 aa		9.38	□□□□□ -0.91
LIMCH1-222	ENST00000515847	ZFY	P08048	801 aa	Predicted RBP	9.38	□□□□□ -0.91
LIMCH1-222	ENST00000515847	HSPA6	P17066	643 aa		9.38	□□□□□ -0.91
LIMCH1-222	ENST00000515847	CRK	P46108	304 aa		9.38	□□□□□ -0.91
LIMCH1-222	ENST00000515847	TNNI2	P48788	182 aa		9.38	□□□□□ -0.91
LIMCH1-222	ENST00000515847	FMR1	Q06787	632 aa	Known RBP eCLIP	9.38	□□□□□ -0.91
LIMCH1-222	ENST00000515847	B4GALNT3	Q6L9W6	998 aa		9.38	□□□□□ -0.91
LIMCH1-222	ENST00000515847	HHIPL2	Q6UWX4	724 aa		9.38	□□□□□ -0.91
LIMCH1-222	ENST00000515847	MTMR14	Q8NCE2	650 aa		9.38	□□□□□ -0.91
LIMCH1-222	ENST00000515847	DCPS	Q96C86	337 aa	Known RBP	9.38	□□□□□ -0.91
LIMCH1-222	ENST00000515847	HOOK2	Q96ED9	719 aa		9.38	□□□□□ -0.91
LIMCH1-222	ENST00000515847	HAUS7	Q99871	368 aa		9.38	□□□□□ -0.91
LIMCH1-222	ENST00000515847	LNPK	Q9C0E8	428 aa		9.38	□□□□□ -0.91
LIMCH1-222	ENST00000515847	SNRK	Q9NRH2	765 aa		9.38	□□□□□ -0.91
LIMCH1-222	ENST00000515847	PAG1	Q9NWQ8	432 aa		9.38	□□□□□ -0.91
LIMCH1-222	ENST00000515847	SCAF8	Q9UPN6	1271 aa	Known RBP	9.38	□□□□□ -0.91
LIMCH1-222	ENST00000515847	PPP2R3B	Q9Y5P8	575 aa		9.38	□□□□□ -0.91
LIMCH1-222	ENST00000515847	TRPM7	Q96QT4	1865 aa		9.38	□□□□□ -0.91
LIMCH1-222	ENST00000515847	MYH2	Q9UKX2	1941 aa		9.37	□□□□□ -0.91
LIMCH1-222	ENST00000515847	MYO5A	Q9Y4I1	1855 aa	Known RBP	9.37	□□□□□ -0.91
LIMCH1-222	ENST00000515847	HIP1	O00291	1037 aa		9.37	□□□□□ -0.91
LIMCH1-222	ENST00000515847	IDH1	O75874	414 aa	Known RBP	9.37	□□□□□ -0.91
LIMCH1-222	ENST00000515847	DIXDC1	Q155Q3	683 aa		9.37	□□□□□ -0.91
LIMCH1-222	ENST00000515847	NAA16	Q6N069	864 aa	Predicted RBP	9.37	□□□□□ -0.91
LIMCH1-222	ENST00000515847	DLK2	Q6UY11	383 aa		9.37	□□□□□ -0.91
LIMCH1-222	ENST00000515847	TBC1D9	Q6ZT07	1266 aa		9.37	□□□□□ -0.91
LIMCH1-222	ENST00000515847	KRT26	Q7Z3Y9	468 aa		9.37	□□□□□ -0.91
LIMCH1-222	ENST00000515847	USP48	Q86UV5	1035 aa		9.37	□□□□□ -0.91
LIMCH1-222	ENST00000515847	SULF1	Q8IWU6	871 aa		9.37	□□□□□ -0.91
LIMCH1-222	ENST00000515847	DDRGK1	Q96HY6	314 aa		9.37	□□□□□ -0.91
LIMCH1-222	ENST00000515847	PRMT6	Q96LA8	375 aa	Predicted RBP	9.37	□□□□□ -0.91
LIMCH1-222	ENST00000515847	EIF2AK3	Q9NZJ5	1116 aa	Known RBP	9.37	□□□□□ -0.91
LIMCH1-222	ENST00000515847	NDUFB9	Q9Y6M9	179 aa		9.37	□□□□□ -0.91
LIMCH1-222	ENST00000515847	MROH7-TTC4	A0A0A0MT08	1334 aa		9.36	□□□□□ -0.91
LIMCH1-222	ENST00000515847	CLRN2	A0PK11	232 aa		9.36	□□□□□ -0.91
LIMCH1-222	ENST00000515847	GOLIM4	O00461	696 aa		9.36	□□□□□ -0.91
LIMCH1-222	ENST00000515847	IGHD	P01880	384 aa		9.36	□□□□□ -0.91
LIMCH1-222	ENST00000515847	CYP2E1	P05181	493 aa	Predicted RBP	9.36	□□□□□ -0.91
LIMCH1-222	ENST00000515847	NF2	P35240	595 aa		9.36	□□□□□ -0.91

Retrieved 100 of 20,778 RNA–protein pairs in 17.7 ms