RNA–Protein interactions for RNA: ENST00000509601.1

TPM3-220, Transcript of tropomyosin 3, humanhuman

TSL 4

Gene TPM3, Length 543 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM3-220ENST00000509601 NFIAQ12857 509 aa22.16■■□□□ 1.14
TPM3-220ENST00000509601 IFNL1Q8IU54 200 aa22.16■■□□□ 1.14
TPM3-220ENST00000509601 PANK1Q8TE04 598 aa22.16■■□□□ 1.14
TPM3-220ENST00000509601 FAM151AQ8WW52 585 aa22.16■■□□□ 1.14
TPM3-220ENST00000509601 USP40Q9NVE5 1235 aa22.16■■□□□ 1.14
TPM3-220ENST00000509601 HMG20BQ9P0W2 317 aa22.16■■□□□ 1.14
TPM3-220ENST00000509601 TESPA1A2RU30 521 aaPredicted RBP22.15■■□□□ 1.14
TPM3-220ENST00000509601 IGF2BP3O00425 579 aaKnown RBP eCLIP22.15■■□□□ 1.14
TPM3-220ENST00000509601 NOM1Q5C9Z4 860 aaKnown RBP22.15■■□□□ 1.14
TPM3-220ENST00000509601 ZGPATQ8N5A5 531 aaKnown RBP22.15■■□□□ 1.14
TPM3-220ENST00000509601 ZNF296Q8WUU4 475 aaPredicted RBP22.15■■□□□ 1.14
TPM3-220ENST00000509601 CNKSR2Q8WXI2 1034 aa22.15■■□□□ 1.14
TPM3-220ENST00000509601 FAM163AQ96GL9 167 aaPredicted RBP22.15■■□□□ 1.14
TPM3-220ENST00000509601 FAM198AQ9UFP1 575 aa22.15■■□□□ 1.14
TPM3-220ENST00000509601 ABCF2Q9UG63 623 aa22.15■■□□□ 1.14
TPM3-220ENST00000509601 NOP58Q9Y2X3 529 aaKnown RBP22.15■■□□□ 1.14
TPM3-220ENST00000509601 GPR25O00155 361 aa22.14■■□□□ 1.13
TPM3-220ENST00000509601 SURF6O75683 361 aaKnown RBP22.14■■□□□ 1.13
TPM3-220ENST00000509601 VGLL4Q14135 290 aa22.14■■□□□ 1.13
TPM3-220ENST00000509601 ZFPM1Q8IX07 1006 aa22.14■■□□□ 1.13
TPM3-220ENST00000509601 OPTNQ96CV9 577 aa22.14■■□□□ 1.13
TPM3-220ENST00000509601 MS4A4AQ96JQ5 239 aa22.14■■□□□ 1.13
TPM3-220ENST00000509601 PTPN18Q99952 460 aa22.14■■□□□ 1.13
TPM3-220ENST00000509601 GPR108Q9NPR9 543 aa22.14■■□□□ 1.13
TPM3-220ENST00000509601 GAKO14976 1311 aa22.13■■□□□ 1.13
TPM3-220ENST00000509601 CCDC85CA6NKD9 419 aa22.13■■□□□ 1.13
TPM3-220ENST00000509601 ALDH1A1P00352 501 aa22.13■■□□□ 1.13
TPM3-220ENST00000509601 ARID4AP29374 1257 aaPredicted RBP22.13■■□□□ 1.13
TPM3-220ENST00000509601 PI16Q6UXB8 463 aa22.13■■□□□ 1.13
TPM3-220ENST00000509601 MIGA2Q7L4E1 593 aa22.13■■□□□ 1.13
TPM3-220ENST00000509601 ZNF384Q8TF68 577 aa22.13■■□□□ 1.13
TPM3-220ENST00000509601 TCP10Q12799 353 aa22.12■■□□□ 1.13
TPM3-220ENST00000509601 GORABQ5T7V8 394 aa22.12■■□□□ 1.13
TPM3-220ENST00000509601 SPTY2D1Q68D10 685 aaPredicted RBP22.12■■□□□ 1.13
TPM3-220ENST00000509601 TBC1D9Q6ZT07 1266 aa22.12■■□□□ 1.13
TPM3-220ENST00000509601 SPATA5Q8NB90 893 aa22.12■■□□□ 1.13
TPM3-220ENST00000509601 RPAP1Q9BWH6 1393 aaPredicted RBP22.12■■□□□ 1.13
TPM3-220ENST00000509601 TNNI3KQ59H18 835 aa22.11■■□□□ 1.13
TPM3-220ENST00000509601 ERICH6Q7L0X2 663 aa22.11■■□□□ 1.13
TPM3-220ENST00000509601 CTU1Q7Z7A3 348 aaKnown RBP22.11■■□□□ 1.13
TPM3-220ENST00000509601 ZKSCAN4Q969J2 545 aaPredicted RBP22.11■■□□□ 1.13
TPM3-220ENST00000509601 HOOK2Q96ED9 719 aa22.11■■□□□ 1.13
TPM3-220ENST00000509601 IDI2Q9BXS1 227 aa22.11■■□□□ 1.13
TPM3-220ENST00000509601 FPGT-TNNI3KV9GXZ4 949 aa22.11■■□□□ 1.13
TPM3-220ENST00000509601 OTOFQ9HC10 1997 aa22.1■■□□□ 1.13
TPM3-220ENST00000509601 MYH2Q9UKX2 1941 aa22.1■■□□□ 1.13
TPM3-220ENST00000509601 MCAMP43121 646 aa22.1■■□□□ 1.13
TPM3-220ENST00000509601 MECOMQ03112 1051 aa22.1■■□□□ 1.13
TPM3-220ENST00000509601 CEP85Q6P2H3 762 aa22.1■■□□□ 1.13
TPM3-220ENST00000509601 DBNDD2Q9BQY9 259 aa22.1■■□□□ 1.13
TPM3-220ENST00000509601 CSADQ9Y600 493 aa22.1■■□□□ 1.13
TPM3-220ENST00000509601 SNCAIPQ9Y6H5 919 aa22.1■■□□□ 1.13
TPM3-220ENST00000509601 DCAF15Q66K64 600 aa22.09■■□□□ 1.13
TPM3-220ENST00000509601 DZIP1Q86YF9 867 aaKnown RBP22.09■■□□□ 1.13
TPM3-220ENST00000509601 SLF2Q8IX21 1173 aa22.09■■□□□ 1.13
TPM3-220ENST00000509601 WRNIP1Q96S55 665 aa22.09■■□□□ 1.13
TPM3-220ENST00000509601 ZNF341Q9BYN7 854 aa22.09■■□□□ 1.13
TPM3-220ENST00000509601 ZNF112Q9UJU3 913 aa22.09■■□□□ 1.13
TPM3-220ENST00000509601 LAMB1P07942 1786 aa22.08■■□□□ 1.13
TPM3-220ENST00000509601 GPR75-ASB3A0A0A6YYF3 556 aa22.08■■□□□ 1.13
TPM3-220ENST00000509601 SPDYE5A6NIY4 337 aa22.08■■□□□ 1.13
TPM3-220ENST00000509601 FKTNO75072 461 aa22.08■■□□□ 1.13
TPM3-220ENST00000509601 WDHD1O75717 1129 aaPredicted RBP22.08■■□□□ 1.13
TPM3-220ENST00000509601 UQCRFS1P1P0C7P4 283 aa22.08■■□□□ 1.13
TPM3-220ENST00000509601 RGS3P49796 1198 aa22.08■■□□□ 1.13
TPM3-220ENST00000509601 OS9Q13438 667 aaPredicted RBP22.08■■□□□ 1.13
TPM3-220ENST00000509601 BRI3BPQ8WY22 251 aa22.08■■□□□ 1.13
TPM3-220ENST00000509601 NSUN4Q96CB9 384 aaKnown RBP22.08■■□□□ 1.13
TPM3-220ENST00000509601 ENTPD3O75355 529 aa22.07■■□□□ 1.12
TPM3-220ENST00000509601 MS4A1P11836 297 aa22.07■■□□□ 1.12
TPM3-220ENST00000509601 INPP5BP32019 993 aa22.07■■□□□ 1.12
TPM3-220ENST00000509601 BTDP43251 543 aa22.07■■□□□ 1.12
TPM3-220ENST00000509601 RHBDL3P58872 404 aa22.07■■□□□ 1.12
TPM3-220ENST00000509601 SH3BP5LQ7L8J4 393 aa22.07■■□□□ 1.12
TPM3-220ENST00000509601 ERO1BQ86YB8 467 aa22.07■■□□□ 1.12
TPM3-220ENST00000509601 OTUD5Q96G74 571 aa22.07■■□□□ 1.12
TPM3-220ENST00000509601 MROH7-TTC4A0A0A0MT08 1334 aa22.06■■□□□ 1.12
TPM3-220ENST00000509601 GTF2A2P52657 109 aa22.06■■□□□ 1.12
TPM3-220ENST00000509601 OTUD7BQ6GQQ9 843 aa22.06■■□□□ 1.12
TPM3-220ENST00000509601 EAF2Q96CJ1 260 aaPredicted RBP22.06■■□□□ 1.12
TPM3-220ENST00000509601 DDX4Q9NQI0 724 aaKnown RBP22.06■■□□□ 1.12
TPM3-220ENST00000509601 SNRKQ9NRH2 765 aa22.06■■□□□ 1.12
TPM3-220ENST00000509601 RFX7Q2KHR2 1363 aa22.05■■□□□ 1.12
TPM3-220ENST00000509601 RGS19P49795 217 aa22.05■■□□□ 1.12
TPM3-220ENST00000509601 MAP3K10Q02779 954 aa22.05■■□□□ 1.12
TPM3-220ENST00000509601 CRHR2Q13324 411 aa22.05■■□□□ 1.12
TPM3-220ENST00000509601 CCDC158Q5M9N0 1113 aa22.05■■□□□ 1.12
TPM3-220ENST00000509601 ZNF512BQ96KM6 892 aaPredicted RBP22.05■■□□□ 1.12
TPM3-220ENST00000509601 CCDC8Q9H0W5 538 aaPredicted RBP22.05■■□□□ 1.12
TPM3-220ENST00000509601 DBNLQ9UJU6 430 aaKnown RBP22.05■■□□□ 1.12
TPM3-220ENST00000509601 RCAN3Q9UKA8 241 aa22.05■■□□□ 1.12
TPM3-220ENST00000509601 AK9Q5TCS8 1911 aa22.04■■□□□ 1.12
TPM3-220ENST00000509601 ATRNL1Q5VV63 1379 aa22.04■■□□□ 1.12
TPM3-220ENST00000509601 CCL15-CCL14A0A0B4J2E2 113 aa22.04■■□□□ 1.12
TPM3-220ENST00000509601 DDTLA6NHG4 134 aaPredicted RBP22.04■■□□□ 1.12
TPM3-220ENST00000509601 IRF6O14896 467 aa22.04■■□□□ 1.12
TPM3-220ENST00000509601 LDHCP07864 332 aa22.04■■□□□ 1.12
TPM3-220ENST00000509601 CCL15Q16663 113 aa22.04■■□□□ 1.12
TPM3-220ENST00000509601 TTC39AQ5SRH9 613 aa22.04■■□□□ 1.12
TPM3-220ENST00000509601 ZBTB40Q9NUA8 1239 aa22.04■■□□□ 1.12
Retrieved 100 of 20,778 RNA–protein pairs in 32.4 ms