RNA–Protein interactions for RNA: ENST00000508465.5

NUP54-206, Transcript of nucleoporin 54, humanhuman

TSL 3

Gene NUP54, Length 744 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-206ENST00000508465 USP11P51784 963 aa7.06□□□□□ -1.28
NUP54-206ENST00000508465 IKBKEQ14164 716 aa7.06□□□□□ -1.28
NUP54-206ENST00000508465 TMEM102Q8N9M5 508 aaPredicted RBP7.06□□□□□ -1.28
NUP54-206ENST00000508465 SMG8Q8ND04 991 aaKnown RBP7.06□□□□□ -1.28
NUP54-206ENST00000508465 BSNDQ8WZ55 320 aa7.06□□□□□ -1.28
NUP54-206ENST00000508465 SUGCTQ9HAC7 445 aa7.06□□□□□ -1.28
NUP54-206ENST00000508465 CCDC39Q9UFE4 941 aa7.06□□□□□ -1.28
NUP54-206ENST00000508465 SOX13Q9UN79 622 aa7.06□□□□□ -1.28
NUP54-206ENST00000508465 RICTORQ6R327 1708 aa7.06□□□□□ -1.28
NUP54-206ENST00000508465 CDC42BPBQ9Y5S2 1711 aa7.06□□□□□ -1.28
NUP54-206ENST00000508465 SPAG9O60271 1321 aaKnown RBP7.05□□□□□ -1.28
NUP54-206ENST00000508465 CFAP74Q9C0B2 1584 aa7.05□□□□□ -1.28
NUP54-206ENST00000508465 EIF4EBP3O60516 100 aaPredicted RBP7.05□□□□□ -1.28
NUP54-206ENST00000508465 ATG7O95352 703 aa7.05□□□□□ -1.28
NUP54-206ENST00000508465 CEBPAP49715 358 aaPredicted RBP7.05□□□□□ -1.28
NUP54-206ENST00000508465 C8orf34Q49A92 452 aa7.05□□□□□ -1.28
NUP54-206ENST00000508465 EXOSC6Q5RKV6 272 aaKnown RBP7.05□□□□□ -1.28
NUP54-206ENST00000508465 TP53INP2Q8IXH6 220 aa7.05□□□□□ -1.28
NUP54-206ENST00000508465 CLP1Q92989 425 aaKnown RBP7.05□□□□□ -1.28
NUP54-206ENST00000508465 YIPF2Q9BWQ6 316 aa7.05□□□□□ -1.28
NUP54-206ENST00000508465 USP26Q9BXU7 913 aa7.05□□□□□ -1.28
NUP54-206ENST00000508465 TMPRSS13Q9BYE2 586 aa7.05□□□□□ -1.28
NUP54-206ENST00000508465 ATP10AO60312 1499 aa7.04□□□□□ -1.28
NUP54-206ENST00000508465 SOX1O00570 391 aaPredicted RBP7.04□□□□□ -1.28
NUP54-206ENST00000508465 CYP26A1O43174 497 aa7.04□□□□□ -1.28
NUP54-206ENST00000508465 TRPA1O75762 1119 aa7.04□□□□□ -1.28
NUP54-206ENST00000508465 PRNPP04156 253 aa7.04□□□□□ -1.28
NUP54-206ENST00000508465 ACPPP15309 386 aa7.04□□□□□ -1.28
NUP54-206ENST00000508465 DNM1Q05193 864 aaKnown RBP7.04□□□□□ -1.28
NUP54-206ENST00000508465 MSMPQ1L6U9 139 aa7.04□□□□□ -1.28
NUP54-206ENST00000508465 TMEM164Q5U3C3 297 aa7.04□□□□□ -1.28
NUP54-206ENST00000508465 VSIG10LQ86VR7 867 aa7.04□□□□□ -1.28
NUP54-206ENST00000508465 ATCAYQ86WG3 371 aa7.04□□□□□ -1.28
NUP54-206ENST00000508465 EDEM1Q92611 657 aa7.04□□□□□ -1.28
NUP54-206ENST00000508465 OSMRQ99650 979 aa7.04□□□□□ -1.28
NUP54-206ENST00000508465 ZFYVE16Q7Z3T8 1539 aa7.04□□□□□ -1.28
NUP54-206ENST00000508465 CDC42BPAQ5VT25 1732 aa7.04□□□□□ -1.28
NUP54-206ENST00000508465 NXPE3Q969Y0 559 aa7.03□□□□□ -1.28
NUP54-206ENST00000508465 NCOA2Q15596 1464 aa7.03□□□□□ -1.28
NUP54-206ENST00000508465 ZNF518AQ6AHZ1 1483 aa7.03□□□□□ -1.28
NUP54-206ENST00000508465 MAGI2Q86UL8 1455 aa7.03□□□□□ -1.28
NUP54-206ENST00000508465 PREX2Q70Z35 1606 aa7.02□□□□□ -1.29
NUP54-206ENST00000508465 TIAF1O95411 115 aa7.02□□□□□ -1.29
NUP54-206ENST00000508465 NOM1Q5C9Z4 860 aaKnown RBP7.02□□□□□ -1.29
NUP54-206ENST00000508465 LCE1DQ5T752 114 aa7.02□□□□□ -1.29
NUP54-206ENST00000508465 HGSNATQ68CP4 663 aa7.02□□□□□ -1.29
NUP54-206ENST00000508465 OGFOD2Q6N063 350 aa7.02□□□□□ -1.29
NUP54-206ENST00000508465 AGBL5Q8NDL9 886 aa7.02□□□□□ -1.29
NUP54-206ENST00000508465 TBC1D32Q96NH3 1257 aa7.02□□□□□ -1.29
NUP54-206ENST00000508465 HHIPQ96QV1 700 aa7.02□□□□□ -1.29
NUP54-206ENST00000508465 SOX17Q9H6I2 414 aaPredicted RBP7.02□□□□□ -1.29
NUP54-206ENST00000508465 BSDC1Q9NW68 430 aaPredicted RBP7.02□□□□□ -1.29
NUP54-206ENST00000508465 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP7.02□□□□□ -1.29
NUP54-206ENST00000508465 LRRC9Q6ZRR7 1453 aa7.02□□□□□ -1.29
NUP54-206ENST00000508465 SAMD9LQ8IVG5 1584 aa7.02□□□□□ -1.29
NUP54-206ENST00000508465 ZMYM4Q5VZL5 1548 aa7.01□□□□□ -1.29
NUP54-206ENST00000508465 SIGLEC1Q9BZZ2 1709 aa7.01□□□□□ -1.29
NUP54-206ENST00000508465 TIAM1Q13009 1591 aa7.01□□□□□ -1.29
NUP54-206ENST00000508465 PTPRMP28827 1452 aa7.01□□□□□ -1.29
NUP54-206ENST00000508465 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP7.01□□□□□ -1.29
NUP54-206ENST00000508465 LOC100289279A0A1B0GTE1 492 aa7.01□□□□□ -1.29
NUP54-206ENST00000508465 EDN3P14138 238 aa7.01□□□□□ -1.29
NUP54-206ENST00000508465 JUNBP17275 347 aaPredicted RBP7.01□□□□□ -1.29
NUP54-206ENST00000508465 MZF1P28698 734 aaPredicted RBP7.01□□□□□ -1.29
NUP54-206ENST00000508465 GGT6Q6P531 493 aa7.01□□□□□ -1.29
NUP54-206ENST00000508465 CBLL1Q75N03 491 aa7.01□□□□□ -1.29
NUP54-206ENST00000508465 FBLIM1Q8WUP2 373 aa7.01□□□□□ -1.29
NUP54-206ENST00000508465 GGNBP2Q9H3C7 697 aa7.01□□□□□ -1.29
NUP54-206ENST00000508465 ABCC1P33527 1531 aa7.01□□□□□ -1.29
NUP54-206ENST00000508465 ARHGEF40Q8TER5 1519 aa7.01□□□□□ -1.29
NUP54-206ENST00000508465 SYCP2Q9BX26 1530 aa7.01□□□□□ -1.29
NUP54-206ENST00000508465 KIAA1107Q9UPP5 1409 aa7.01□□□□□ -1.29
NUP54-206ENST00000508465 MLH3Q9UHC1 1453 aa7□□□□□ -1.29
NUP54-206ENST00000508465 PDGFAP04085 211 aa7□□□□□ -1.29
NUP54-206ENST00000508465 TSPY4P0CV99 314 aa7□□□□□ -1.29
NUP54-206ENST00000508465 TSPY10P0CW01 314 aa7□□□□□ -1.29
NUP54-206ENST00000508465 DRD2P14416 443 aa7□□□□□ -1.29
NUP54-206ENST00000508465 ATP2B4P23634 1241 aa7□□□□□ -1.29
NUP54-206ENST00000508465 HSPA2P54652 639 aa7□□□□□ -1.29
NUP54-206ENST00000508465 SRPK2P78362 688 aaKnown RBP7□□□□□ -1.29
NUP54-206ENST00000508465 DUSP27Q5VZP5 1158 aa7□□□□□ -1.29
NUP54-206ENST00000508465 VN1R5Q7Z5H4 357 aa7□□□□□ -1.29
NUP54-206ENST00000508465 ASAP3Q8TDY4 903 aa7□□□□□ -1.29
NUP54-206ENST00000508465 SEPT3Q9UH03 358 aa7□□□□□ -1.29
NUP54-206ENST00000508465 EHBP1L1Q8N3D4 1523 aa7□□□□□ -1.29
NUP54-206ENST00000508465 C9orf84Q5VXU9 1444 aa7□□□□□ -1.29
NUP54-206ENST00000508465 ADAMTSL3P82987 1691 aa7□□□□□ -1.29
NUP54-206ENST00000508465 MBD5Q9P267 1494 aa6.99□□□□□ -1.29
NUP54-206ENST00000508465 BCORL1Q5H9F3 1711 aa6.99□□□□□ -1.29
NUP54-206ENST00000508465 MADDQ8WXG6 1647 aa6.99□□□□□ -1.29
NUP54-206ENST00000508465 CYP27A1Q02318 531 aa6.99□□□□□ -1.29
NUP54-206ENST00000508465 SOX4Q06945 474 aaPredicted RBP6.99□□□□□ -1.29
NUP54-206ENST00000508465 CDPF1Q6NVV7 123 aa6.99□□□□□ -1.29
NUP54-206ENST00000508465 ZAR1Q86SH2 424 aa6.99□□□□□ -1.29
NUP54-206ENST00000508465 POU5F2Q8N7G0 328 aa6.99□□□□□ -1.29
NUP54-206ENST00000508465 HELQQ8TDG4 1101 aa6.99□□□□□ -1.29
NUP54-206ENST00000508465 ZKSCAN3Q9BRR0 538 aa6.99□□□□□ -1.29
NUP54-206ENST00000508465 CHRDQ9H2X0 955 aa6.99□□□□□ -1.29
NUP54-206ENST00000508465 KDM5CP41229 1560 aa6.99□□□□□ -1.29
NUP54-206ENST00000508465 PLEKHH2Q8IVE3 1493 aa6.98□□□□□ -1.29
Retrieved 100 of 20,778 RNA–protein pairs in 30.9 ms