RNA–Protein interactions for RNA: ENST00000496447.5

PTPRF-215, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 5,887 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-215ENST00000496447 PPP1R14CQ8TAE6 165 aa14.82□□□□□ -0.04
PTPRF-215ENST00000496447 FERP16591 822 aa14.82□□□□□ -0.04
PTPRF-215ENST00000496447 CKAP4Q07065 602 aaKnown RBP14.82□□□□□ -0.04
PTPRF-215ENST00000496447 BEGAINQ9BUH8 593 aa14.82□□□□□ -0.04
PTPRF-215ENST00000496447 DNAJC25Q9H1X3 360 aa14.82□□□□□ -0.04
PTPRF-215ENST00000496447 TMEM110-MUSTN1A8MSY1 372 aa14.81□□□□□ -0.04
PTPRF-215ENST00000496447 CHMP2AO43633 222 aa14.81□□□□□ -0.04
PTPRF-215ENST00000496447 NEK11Q8NG66 645 aa14.81□□□□□ -0.04
PTPRF-215ENST00000496447 ATP7AQ04656 1500 aa14.81□□□□□ -0.04
PTPRF-215ENST00000496447 CCDC175P0C221 793 aa14.81□□□□□ -0.04
PTPRF-215ENST00000496447 OTUD6BQ8N6M0 293 aa14.81□□□□□ -0.04
PTPRF-215ENST00000496447 FAM200AQ8TCP9 573 aa14.81□□□□□ -0.04
PTPRF-215ENST00000496447 TMEM87BQ96K49 555 aa14.81□□□□□ -0.04
PTPRF-215ENST00000496447 ZNF174Q15697 407 aa14.81□□□□□ -0.04
PTPRF-215ENST00000496447 CCDC65Q8IXS2 484 aa14.81□□□□□ -0.04
PTPRF-215ENST00000496447 APPBP2Q92624 585 aa14.81□□□□□ -0.04
PTPRF-215ENST00000496447 STX17P56962 302 aa14.81□□□□□ -0.04
PTPRF-215ENST00000496447 SV2BQ7L1I2 683 aa14.81□□□□□ -0.04
PTPRF-215ENST00000496447 LMBR1Q8WVP7 490 aa14.81□□□□□ -0.04
PTPRF-215ENST00000496447 RASAL2Q9UJF2 1139 aa14.81□□□□□ -0.04
PTPRF-215ENST00000496447 MAST1Q9Y2H9 1570 aa14.8□□□□□ -0.04
PTPRF-215ENST00000496447 VWA3AA6NCI4 1184 aa14.8□□□□□ -0.04
PTPRF-215ENST00000496447 RPL13P26373 211 aaKnown RBP14.8□□□□□ -0.04
PTPRF-215ENST00000496447 HARSP12081 509 aaKnown RBP14.8□□□□□ -0.04
PTPRF-215ENST00000496447 MROH5Q6ZUA9 1318 aa14.8□□□□□ -0.04
PTPRF-215ENST00000496447 TACC1O75410 805 aa14.8□□□□□ -0.04
PTPRF-215ENST00000496447 TUBB4AP04350 444 aa14.8□□□□□ -0.04
PTPRF-215ENST00000496447 CCT6AP40227 531 aaKnown RBP14.8□□□□□ -0.04
PTPRF-215ENST00000496447 UBXN1Q04323 297 aa14.8□□□□□ -0.04
PTPRF-215ENST00000496447 RNF187Q5TA31 235 aaPredicted RBP14.8□□□□□ -0.04
PTPRF-215ENST00000496447 NOP56O00567 594 aaKnown RBP14.79□□□□□ -0.04
PTPRF-215ENST00000496447 GPAA1O43292 621 aa14.79□□□□□ -0.04
PTPRF-215ENST00000496447 PPIP5K2O43314 1243 aa14.79□□□□□ -0.04
PTPRF-215ENST00000496447 PRDM1O75626 825 aa14.79□□□□□ -0.04
PTPRF-215ENST00000496447 TCP10Q12799 353 aa14.79□□□□□ -0.04
PTPRF-215ENST00000496447 ZBED4O75132 1171 aa14.79□□□□□ -0.04
PTPRF-215ENST00000496447 DEXIO95424 95 aa14.79□□□□□ -0.04
PTPRF-215ENST00000496447 MYCLP12524 364 aaPredicted RBP14.79□□□□□ -0.04
PTPRF-215ENST00000496447 GSTA5Q7RTV2 222 aa14.79□□□□□ -0.04
PTPRF-215ENST00000496447 CCDC50Q8IVM0 306 aa14.79□□□□□ -0.04
PTPRF-215ENST00000496447 SNX21Q969T3 373 aa14.79□□□□□ -0.04
PTPRF-215ENST00000496447 DLGAP5Q15398 846 aa14.79□□□□□ -0.04
PTPRF-215ENST00000496447 CCDC155Q8N6L0 562 aa14.79□□□□□ -0.04
PTPRF-215ENST00000496447 CEP112Q8N8E3 955 aa14.79□□□□□ -0.04
PTPRF-215ENST00000496447 SREK1Q8WXA9 508 aaKnown RBP14.79□□□□□ -0.04
PTPRF-215ENST00000496447 DCAF17Q5H9S7 520 aaPredicted RBP14.79□□□□□ -0.04
PTPRF-215ENST00000496447 GLT8D2Q9H1C3 349 aa14.79□□□□□ -0.04
PTPRF-215ENST00000496447 FRMD4BQ9Y2L6 1034 aa14.79□□□□□ -0.04
PTPRF-215ENST00000496447 USP19O94966 1318 aa14.79□□□□□ -0.04
PTPRF-215ENST00000496447 UNC13AQ9UPW8 1703 aa14.79□□□□□ -0.04
PTPRF-215ENST00000496447 MAPKBP1O60336 1514 aa14.79□□□□□ -0.04
PTPRF-215ENST00000496447 ARHGEF12Q9NZN5 1544 aa14.79□□□□□ -0.04
PTPRF-215ENST00000496447 ERVV-2B6SEH9 535 aa14.79□□□□□ -0.04
PTPRF-215ENST00000496447 ARL1P40616 181 aaPredicted RBP14.79□□□□□ -0.04
PTPRF-215ENST00000496447 SLC1A4P43007 532 aa14.79□□□□□ -0.04
PTPRF-215ENST00000496447 SMTNP53814 917 aa14.79□□□□□ -0.04
PTPRF-215ENST00000496447 SUCLG2Q96I99 432 aa14.79□□□□□ -0.04
PTPRF-215ENST00000496447 FNBP1Q96RU3 617 aa14.79□□□□□ -0.04
PTPRF-215ENST00000496447 PLCB3Q01970 1234 aa14.78□□□□□ -0.04
PTPRF-215ENST00000496447 BIRC3Q13489 604 aa14.78□□□□□ -0.04
PTPRF-215ENST00000496447 SPATA5Q8NB90 893 aa14.78□□□□□ -0.04
PTPRF-215ENST00000496447 ZNF496Q96IT1 587 aaPredicted RBP14.78□□□□□ -0.04
PTPRF-215ENST00000496447 CCDC42Q96M95 316 aa14.78□□□□□ -0.04
PTPRF-215ENST00000496447 EAPPQ56P03 285 aaPredicted RBP14.78□□□□□ -0.04
PTPRF-215ENST00000496447 CCDC117Q8IWD4 279 aaPredicted RBP14.78□□□□□ -0.04
PTPRF-215ENST00000496447 A0A1W2PRG0 241 aa14.78□□□□□ -0.04
PTPRF-215ENST00000496447 CCDC169A6NNP5 214 aa14.78□□□□□ -0.04
PTPRF-215ENST00000496447 PLCD1P51178 756 aa14.78□□□□□ -0.04
PTPRF-215ENST00000496447 KRT83P78385 493 aa14.78□□□□□ -0.04
PTPRF-215ENST00000496447 TCIRG1Q13488 830 aa14.78□□□□□ -0.04
PTPRF-215ENST00000496447 GCKRQ14397 625 aa14.78□□□□□ -0.04
PTPRF-215ENST00000496447 MSL1Q68DK7 614 aa14.78□□□□□ -0.04
PTPRF-215ENST00000496447 TBC1D22AQ8WUA7 517 aa14.78□□□□□ -0.04
PTPRF-215ENST00000496447 IQCGQ9H095 443 aaKnown RBP14.78□□□□□ -0.04
PTPRF-215ENST00000496447 TMEM2Q9UHN6 1383 aa14.78□□□□□ -0.04
PTPRF-215ENST00000496447 CHL1O00533 1208 aa14.77□□□□□ -0.04
PTPRF-215ENST00000496447 ZBTB7BO15156 539 aaPredicted RBP14.77□□□□□ -0.04
PTPRF-215ENST00000496447 SKILP12757 684 aa14.77□□□□□ -0.04
PTPRF-215ENST00000496447 SYT1P21579 422 aa14.77□□□□□ -0.04
PTPRF-215ENST00000496447 HAUS3Q68CZ6 603 aa14.77□□□□□ -0.04
PTPRF-215ENST00000496447 RNF216Q9NWF9 866 aaPredicted RBP14.77□□□□□ -0.04
PTPRF-215ENST00000496447 RPS6KB1P23443 525 aa14.77□□□□□ -0.04
PTPRF-215ENST00000496447 PIK3AP1Q6ZUJ8 805 aa14.77□□□□□ -0.04
PTPRF-215ENST00000496447 MAPKAPK5Q8IW41 473 aa14.77□□□□□ -0.04
PTPRF-215ENST00000496447 SLTMQ9NWH9 1034 aaKnown RBP eCLIP14.77□□□□□ -0.04
PTPRF-215ENST00000496447 BCS1LQ9Y276 419 aa14.77□□□□□ -0.04
PTPRF-215ENST00000496447 H7C1D1 291 aa14.77□□□□□ -0.04
PTPRF-215ENST00000496447 CCNT1O60563 726 aaKnown RBP14.77□□□□□ -0.04
PTPRF-215ENST00000496447 SMC5Q8IY18 1101 aa14.77□□□□□ -0.04
PTPRF-215ENST00000496447 IFT74Q96LB3 600 aa14.77□□□□□ -0.04
PTPRF-215ENST00000496447 V9GY48 417 aaPredicted RBP14.77□□□□□ -0.04
PTPRF-215ENST00000496447 KIF5AQ12840 1032 aa14.77□□□□□ -0.05
PTPRF-215ENST00000496447 CPXCR1Q8N123 301 aa14.77□□□□□ -0.05
PTPRF-215ENST00000496447 ARFGAP3Q9NP61 516 aa14.77□□□□□ -0.05
PTPRF-215ENST00000496447 V9GYY5 206 aaPredicted RBP14.77□□□□□ -0.05
PTPRF-215ENST00000496447 HSF2BPO75031 334 aa14.77□□□□□ -0.05
PTPRF-215ENST00000496447 RILPL1Q5EBL4 403 aa14.77□□□□□ -0.05
PTPRF-215ENST00000496447 WDR44Q5JSH3 913 aa14.77□□□□□ -0.05
PTPRF-215ENST00000496447 FLAD1Q8NFF5 587 aa14.77□□□□□ -0.05
PTPRF-215ENST00000496447 CTAGE15A4D2H0 777 aa14.76□□□□□ -0.05
Retrieved 100 of 20,778 RNA–protein pairs in 23.9 ms