RNA–Protein interactions for RNA: ENST00000495835.1

HLA-C-209, Transcript of major histocompatibility complex, class I, C, humanhuman

Gene HLA-C, Length 1,073 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-C-209ENST00000495835 MAP3K9P80192 1104 aa29.87■■■□□ 2.37
HLA-C-209ENST00000495835 CDC42EP5Q6NZY7 148 aa29.87■■■□□ 2.37
HLA-C-209ENST00000495835 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP29.87■■■□□ 2.37
HLA-C-209ENST00000495835 OTOFQ9HC10 1997 aa29.86■■■□□ 2.37
HLA-C-209ENST00000495835 ARID4AP29374 1257 aaPredicted RBP29.86■■■□□ 2.37
HLA-C-209ENST00000495835 CDAN1Q8IWY9 1227 aa29.86■■■□□ 2.37
HLA-C-209ENST00000495835 DDX55Q8NHQ9 600 aaKnown RBP eCLIP29.86■■■□□ 2.37
HLA-C-209ENST00000495835 MYH2Q9UKX2 1941 aa29.86■■■□□ 2.37
HLA-C-209ENST00000495835 UQCRFS1P1P0C7P4 283 aa29.85■■■□□ 2.37
HLA-C-209ENST00000495835 DGKZQ13574 1117 aa29.85■■■□□ 2.37
HLA-C-209ENST00000495835 DCAF15Q66K64 600 aa29.85■■■□□ 2.37
HLA-C-209ENST00000495835 PPP1R3FQ6ZSY5 799 aaPredicted RBP29.85■■■□□ 2.37
HLA-C-209ENST00000495835 MCOLN1Q9GZU1 580 aa29.85■■■□□ 2.37
HLA-C-209ENST00000495835 ABCF2Q9UG63 623 aa29.85■■■□□ 2.37
HLA-C-209ENST00000495835 CSADQ9Y600 493 aa29.85■■■□□ 2.37
HLA-C-209ENST00000495835 GAKO14976 1311 aa29.85■■■□□ 2.37
HLA-C-209ENST00000495835 SURF6O75683 361 aaKnown RBP29.84■■■□□ 2.37
HLA-C-209ENST00000495835 DZIP1Q86YF9 867 aaKnown RBP29.84■■■□□ 2.37
HLA-C-209ENST00000495835 TESPA1A2RU30 521 aaPredicted RBP29.83■■■□□ 2.37
HLA-C-209ENST00000495835 OS9Q13438 667 aaPredicted RBP29.83■■■□□ 2.37
HLA-C-209ENST00000495835 OTUD7BQ6GQQ9 843 aa29.83■■■□□ 2.37
HLA-C-209ENST00000495835 ERICH6Q7L0X2 663 aa29.83■■■□□ 2.37
HLA-C-209ENST00000495835 IFNL1Q8IU54 200 aa29.83■■■□□ 2.37
HLA-C-209ENST00000495835 SPATA5Q8NB90 893 aa29.83■■■□□ 2.37
HLA-C-209ENST00000495835 USP40Q9NVE5 1235 aa29.83■■■□□ 2.37
HLA-C-209ENST00000495835 HMG20BQ9P0W2 317 aa29.83■■■□□ 2.37
HLA-C-209ENST00000495835 TBC1D8O95759 1140 aa29.82■■■□□ 2.36
HLA-C-209ENST00000495835 IDI2Q9BXS1 227 aa29.82■■■□□ 2.36
HLA-C-209ENST00000495835 C1orf115Q9H7X2 142 aa29.82■■■□□ 2.36
HLA-C-209ENST00000495835 IGSF3O75054 1194 aa29.81■■■□□ 2.36
HLA-C-209ENST00000495835 VGLL4Q14135 290 aa29.81■■■□□ 2.36
HLA-C-209ENST00000495835 TNNI3KQ59H18 835 aa29.81■■■□□ 2.36
HLA-C-209ENST00000495835 PANK1Q8TE04 598 aa29.81■■■□□ 2.36
HLA-C-209ENST00000495835 OPTNQ96CV9 577 aa29.81■■■□□ 2.36
HLA-C-209ENST00000495835 ELP3Q9H9T3 547 aa29.81■■■□□ 2.36
HLA-C-209ENST00000495835 FPGT-TNNI3KV9GXZ4 949 aa29.81■■■□□ 2.36
HLA-C-209ENST00000495835 MAP4K4O95819 1239 aaPredicted RBP29.8■■■□□ 2.36
HLA-C-209ENST00000495835 GJA5P36382 358 aa29.8■■■□□ 2.36
HLA-C-209ENST00000495835 CCDC158Q5M9N0 1113 aa29.8■■■□□ 2.36
HLA-C-209ENST00000495835 CEP85Q6P2H3 762 aa29.8■■■□□ 2.36
HLA-C-209ENST00000495835 ZNF341Q9BYN7 854 aa29.8■■■□□ 2.36
HLA-C-209ENST00000495835 GPR25O00155 361 aa29.79■■■□□ 2.36
HLA-C-209ENST00000495835 ENTPD3O75355 529 aa29.79■■■□□ 2.36
HLA-C-209ENST00000495835 LDHCP07864 332 aa29.79■■■□□ 2.36
HLA-C-209ENST00000495835 GSTO1P78417 241 aa29.79■■■□□ 2.36
HLA-C-209ENST00000495835 CTU1Q7Z7A3 348 aaKnown RBP29.79■■■□□ 2.36
HLA-C-209ENST00000495835 ZNF512BQ96KM6 892 aaPredicted RBP29.79■■■□□ 2.36
HLA-C-209ENST00000495835 CHMP4BQ9H444 224 aaKnown RBP29.79■■■□□ 2.36
HLA-C-209ENST00000495835 FAM198AQ9UFP1 575 aa29.79■■■□□ 2.36
HLA-C-209ENST00000495835 AK9Q5TCS8 1911 aa29.79■■■□□ 2.36
HLA-C-209ENST00000495835 NFIAQ12857 509 aa29.78■■■□□ 2.36
HLA-C-209ENST00000495835 ZNF296Q8WUU4 475 aaPredicted RBP29.78■■■□□ 2.36
HLA-C-209ENST00000495835 ZBTB4Q9P1Z0 1013 aaPredicted RBP29.78■■■□□ 2.36
HLA-C-209ENST00000495835 RCAN3Q9UKA8 241 aa29.78■■■□□ 2.36
HLA-C-209ENST00000495835 DDX19BQ9UMR2 479 aa29.78■■■□□ 2.36
HLA-C-209ENST00000495835 MROH7-TTC4A0A0A0MT08 1334 aa29.77■■■□□ 2.36
HLA-C-209ENST00000495835 SPDYE5A6NIY4 337 aa29.77■■■□□ 2.36
HLA-C-209ENST00000495835 GTF2A2P52657 109 aa29.77■■■□□ 2.36
HLA-C-209ENST00000495835 MECOMQ03112 1051 aa29.77■■■□□ 2.36
HLA-C-209ENST00000495835 PKN2Q16513 984 aaKnown RBP29.77■■■□□ 2.36
HLA-C-209ENST00000495835 ERO1BQ86YB8 467 aa29.77■■■□□ 2.36
HLA-C-209ENST00000495835 MS4A4AQ96JQ5 239 aa29.77■■■□□ 2.36
HLA-C-209ENST00000495835 WRNIP1Q96S55 665 aa29.77■■■□□ 2.36
HLA-C-209ENST00000495835 GPR75-ASB3A0A0A6YYF3 556 aa29.76■■■□□ 2.35
HLA-C-209ENST00000495835 IGF2BP3O00425 579 aaKnown RBP eCLIP29.76■■■□□ 2.35
HLA-C-209ENST00000495835 MCAMP43121 646 aa29.76■■■□□ 2.35
HLA-C-209ENST00000495835 TCP10Q12799 353 aa29.76■■■□□ 2.35
HLA-C-209ENST00000495835 ERC1Q8IUD2 1116 aa29.76■■■□□ 2.35
HLA-C-209ENST00000495835 ZNF112Q9UJU3 913 aa29.76■■■□□ 2.35
HLA-C-209ENST00000495835 NPM3O75607 178 aaKnown RBP29.75■■■□□ 2.35
HLA-C-209ENST00000495835 HSP90AB4PQ58FF6 505 aa29.75■■■□□ 2.35
HLA-C-209ENST00000495835 TTC39AQ5SRH9 613 aa29.75■■■□□ 2.35
HLA-C-209ENST00000495835 RPAP2Q8IXW5 612 aaPredicted RBP29.75■■■□□ 2.35
HLA-C-209ENST00000495835 NSUN4Q96CB9 384 aaKnown RBP29.75■■■□□ 2.35
HLA-C-209ENST00000495835 FKTNO75072 461 aa29.74■■■□□ 2.35
HLA-C-209ENST00000495835 SNCAIPQ9Y6H5 919 aa29.74■■■□□ 2.35
HLA-C-209ENST00000495835 BTDP43251 543 aa29.73■■■□□ 2.35
HLA-C-209ENST00000495835 PI16Q6UXB8 463 aa29.73■■■□□ 2.35
HLA-C-209ENST00000495835 MIGA2Q7L4E1 593 aa29.73■■■□□ 2.35
HLA-C-209ENST00000495835 DBNDD2Q9BQY9 259 aa29.73■■■□□ 2.35
HLA-C-209ENST00000495835 RFX7Q2KHR2 1363 aa29.73■■■□□ 2.35
HLA-C-209ENST00000495835 RGS3P49796 1198 aa29.72■■■□□ 2.35
HLA-C-209ENST00000495835 PPATQ06203 517 aa29.72■■■□□ 2.35
HLA-C-209ENST00000495835 ZNF384Q8TF68 577 aa29.72■■■□□ 2.35
HLA-C-209ENST00000495835 ZKSCAN4Q969J2 545 aaPredicted RBP29.72■■■□□ 2.35
HLA-C-209ENST00000495835 OTUD5Q96G74 571 aa29.72■■■□□ 2.35
HLA-C-209ENST00000495835 PTPN18Q99952 460 aa29.72■■■□□ 2.35
HLA-C-209ENST00000495835 LRP2BPQ9P2M1 347 aa29.72■■■□□ 2.35
HLA-C-209ENST00000495835 CCDC85CA6NKD9 419 aa29.71■■■□□ 2.35
HLA-C-209ENST00000495835 PPIL2Q13356 520 aa29.71■■■□□ 2.35
HLA-C-209ENST00000495835 TBC1D9Q6ZT07 1266 aa29.71■■■□□ 2.35
HLA-C-209ENST00000495835 ZBTB40Q9NUA8 1239 aa29.71■■■□□ 2.35
HLA-C-209ENST00000495835 RAI14Q9P0K7 980 aa29.71■■■□□ 2.35
HLA-C-209ENST00000495835 WDHD1O75717 1129 aaPredicted RBP29.7■■■□□ 2.35
HLA-C-209ENST00000495835 MAP3K10Q02779 954 aa29.7■■■□□ 2.35
HLA-C-209ENST00000495835 GOLGA6L2Q8N9W4 650 aaPredicted RBP29.7■■■□□ 2.35
HLA-C-209ENST00000495835 CNKSR2Q8WXI2 1034 aa29.7■■■□□ 2.35
HLA-C-209ENST00000495835 R3HDMLQ9H3Y0 253 aa29.7■■■□□ 2.35
HLA-C-209ENST00000495835 ZCCHC17Q9NP64 241 aaKnown RBP29.7■■■□□ 2.35
HLA-C-209ENST00000495835 CCL15-CCL14A0A0B4J2E2 113 aa29.69■■■□□ 2.34
Retrieved 100 of 20,778 RNA–protein pairs in 14.7 ms