RNA–Protein interactions for RNA: ENST00000494646.1

MSH5-218, Transcript of mutS homolog 5, humanhuman

TSL 4

Gene MSH5, Length 528 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-218ENST00000494646 C1orf115Q9H7X2 142 aa11.89□□□□□ -0.51
MSH5-218ENST00000494646 USP40Q9NVE5 1235 aa11.89□□□□□ -0.51
MSH5-218ENST00000494646 ABCF2Q9UG63 623 aa11.89□□□□□ -0.51
MSH5-218ENST00000494646 DAGLAQ9Y4D2 1042 aa11.89□□□□□ -0.51
MSH5-218ENST00000494646 OTOFQ9HC10 1997 aa11.88□□□□□ -0.51
MSH5-218ENST00000494646 MAST3O60307 1309 aa11.88□□□□□ -0.51
MSH5-218ENST00000494646 UNCXA6NJT0 531 aa11.88□□□□□ -0.51
MSH5-218ENST00000494646 IGF2BP3O00425 579 aaKnown RBP eCLIP11.88□□□□□ -0.51
MSH5-218ENST00000494646 MTX1Q13505 466 aa11.88□□□□□ -0.51
MSH5-218ENST00000494646 CDC42EP5Q6NZY7 148 aa11.88□□□□□ -0.51
MSH5-218ENST00000494646 CTU1Q7Z7A3 348 aaKnown RBP11.88□□□□□ -0.51
MSH5-218ENST00000494646 ZKSCAN4Q969J2 545 aaPredicted RBP11.88□□□□□ -0.51
MSH5-218ENST00000494646 AKAP2Q9Y2D5 859 aa11.88□□□□□ -0.51
MSH5-218ENST00000494646 HOXD11P31277 338 aaPredicted RBP11.87□□□□□ -0.51
MSH5-218ENST00000494646 GORABQ5T7V8 394 aa11.87□□□□□ -0.51
MSH5-218ENST00000494646 FAM83AQ86UY5 434 aa11.87□□□□□ -0.51
MSH5-218ENST00000494646 ZFPM1Q8IX07 1006 aa11.87□□□□□ -0.51
MSH5-218ENST00000494646 PTPN18Q99952 460 aa11.87□□□□□ -0.51
MSH5-218ENST00000494646 SEMA3EO15041 775 aa11.86□□□□□ -0.51
MSH5-218ENST00000494646 FKTNO75072 461 aa11.86□□□□□ -0.51
MSH5-218ENST00000494646 ALDH1A1P00352 501 aa11.86□□□□□ -0.51
MSH5-218ENST00000494646 RLBP1P12271 317 aa11.86□□□□□ -0.51
MSH5-218ENST00000494646 ATP8B2P98198 1209 aa11.86□□□□□ -0.51
MSH5-218ENST00000494646 NFIAQ12857 509 aa11.86□□□□□ -0.51
MSH5-218ENST00000494646 RASGRF1Q13972 1273 aa11.86□□□□□ -0.51
MSH5-218ENST00000494646 VGLL4Q14135 290 aa11.86□□□□□ -0.51
MSH5-218ENST00000494646 FKBP1CQ5VVH2 108 aa11.86□□□□□ -0.51
MSH5-218ENST00000494646 ITPRIPQ8IWB1 547 aa11.86□□□□□ -0.51
MSH5-218ENST00000494646 FTSJ3Q8IY81 847 aaKnown RBP11.86□□□□□ -0.51
MSH5-218ENST00000494646 DDX55Q8NHQ9 600 aaKnown RBP eCLIP11.86□□□□□ -0.51
MSH5-218ENST00000494646 FAM151AQ8WW52 585 aa11.86□□□□□ -0.51
MSH5-218ENST00000494646 OTUD5Q96G74 571 aa11.86□□□□□ -0.51
MSH5-218ENST00000494646 CSADQ9Y600 493 aa11.86□□□□□ -0.51
MSH5-218ENST00000494646 ZBTB7BO15156 539 aaPredicted RBP11.85□□□□□ -0.51
MSH5-218ENST00000494646 SURF6O75683 361 aaKnown RBP11.85□□□□□ -0.51
MSH5-218ENST00000494646 OS9Q13438 667 aaPredicted RBP11.85□□□□□ -0.51
MSH5-218ENST00000494646 MVPQ14764 893 aaKnown RBP11.85□□□□□ -0.51
MSH5-218ENST00000494646 OTUD7BQ6GQQ9 843 aa11.85□□□□□ -0.51
MSH5-218ENST00000494646 TBC1D9Q6ZT07 1266 aa11.85□□□□□ -0.51
MSH5-218ENST00000494646 DZIP1Q86YF9 867 aaKnown RBP11.85□□□□□ -0.51
MSH5-218ENST00000494646 ZGPATQ8N5A5 531 aaKnown RBP11.85□□□□□ -0.51
MSH5-218ENST00000494646 WRNIP1Q96S55 665 aa11.85□□□□□ -0.51
MSH5-218ENST00000494646 HMG20BQ9P0W2 317 aa11.85□□□□□ -0.51
MSH5-218ENST00000494646 FAM198AQ9UFP1 575 aa11.85□□□□□ -0.51
MSH5-218ENST00000494646 SALL1Q9NSC2 1324 aa11.85□□□□□ -0.51
MSH5-218ENST00000494646 CCL15-CCL14A0A0B4J2E2 113 aa11.84□□□□□ -0.51
MSH5-218ENST00000494646 TESPA1A2RU30 521 aaPredicted RBP11.84□□□□□ -0.51
MSH5-218ENST00000494646 INPP5BP32019 993 aa11.84□□□□□ -0.51
MSH5-218ENST00000494646 SOX10P56693 466 aa11.84□□□□□ -0.51
MSH5-218ENST00000494646 CRHR2Q13324 411 aa11.84□□□□□ -0.51
MSH5-218ENST00000494646 CCL15Q16663 113 aa11.84□□□□□ -0.51
MSH5-218ENST00000494646 PI16Q6UXB8 463 aa11.84□□□□□ -0.51
MSH5-218ENST00000494646 ERICH6Q7L0X2 663 aa11.84□□□□□ -0.51
MSH5-218ENST00000494646 PANK1Q8TE04 598 aa11.84□□□□□ -0.51
MSH5-218ENST00000494646 MS4A4AQ96JQ5 239 aa11.84□□□□□ -0.51
MSH5-218ENST00000494646 CFHR5Q9BXR6 569 aa11.84□□□□□ -0.51
MSH5-218ENST00000494646 ZNF341Q9BYN7 854 aa11.84□□□□□ -0.51
MSH5-218ENST00000494646 SNCAIPQ9Y6H5 919 aa11.84□□□□□ -0.51
MSH5-218ENST00000494646 MYO5AQ9Y4I1 1855 aaKnown RBP11.84□□□□□ -0.51
MSH5-218ENST00000494646 TNRC18O15417 2968 aaPredicted RBP11.84□□□□□ -0.51
MSH5-218ENST00000494646 ZBED9Q6R2W3 1325 aa11.84□□□□□ -0.51
MSH5-218ENST00000494646 SLURP2P0DP57 97 aa11.83□□□□□ -0.52
MSH5-218ENST00000494646 RGS3P49796 1198 aa11.83□□□□□ -0.52
MSH5-218ENST00000494646 MLLT1Q03111 559 aaPredicted RBP11.83□□□□□ -0.52
MSH5-218ENST00000494646 MECOMQ03112 1051 aa11.83□□□□□ -0.52
MSH5-218ENST00000494646 POLA2Q14181 598 aa11.83□□□□□ -0.52
MSH5-218ENST00000494646 DCAF15Q66K64 600 aa11.83□□□□□ -0.52
MSH5-218ENST00000494646 SPTY2D1Q68D10 685 aaPredicted RBP11.83□□□□□ -0.52
MSH5-218ENST00000494646 SPATA5Q8NB90 893 aa11.83□□□□□ -0.52
MSH5-218ENST00000494646 SSH3Q8TE77 659 aa11.83□□□□□ -0.52
MSH5-218ENST00000494646 BRI3BPQ8WY22 251 aa11.83□□□□□ -0.52
MSH5-218ENST00000494646 HOOK2Q96ED9 719 aa11.83□□□□□ -0.52
MSH5-218ENST00000494646 SNRKQ9NRH2 765 aa11.83□□□□□ -0.52
MSH5-218ENST00000494646 HPS5Q9UPZ3 1129 aa11.83□□□□□ -0.52
MSH5-218ENST00000494646 LAMB1P07942 1786 aa11.82□□□□□ -0.52
MSH5-218ENST00000494646 IRF6O14896 467 aa11.82□□□□□ -0.52
MSH5-218ENST00000494646 BTDP43251 543 aa11.82□□□□□ -0.52
MSH5-218ENST00000494646 RGS19P49795 217 aa11.82□□□□□ -0.52
MSH5-218ENST00000494646 GTF2A2P52657 109 aa11.82□□□□□ -0.52
MSH5-218ENST00000494646 PICALMQ13492 652 aa11.82□□□□□ -0.52
MSH5-218ENST00000494646 PKN2Q16513 984 aaKnown RBP11.82□□□□□ -0.52
MSH5-218ENST00000494646 NOM1Q5C9Z4 860 aaKnown RBP11.82□□□□□ -0.52
MSH5-218ENST00000494646 ERO1BQ86YB8 467 aa11.82□□□□□ -0.52
MSH5-218ENST00000494646 ZSCAN29Q8IWY8 852 aaPredicted RBP11.82□□□□□ -0.52
MSH5-218ENST00000494646 SLF2Q8IX21 1173 aa11.82□□□□□ -0.52
MSH5-218ENST00000494646 CD99L2Q8TCZ2 262 aa11.82□□□□□ -0.52
MSH5-218ENST00000494646 ZNF384Q8TF68 577 aa11.82□□□□□ -0.52
MSH5-218ENST00000494646 CCDC8Q9H0W5 538 aaPredicted RBP11.82□□□□□ -0.52
MSH5-218ENST00000494646 RAI14Q9P0K7 980 aa11.82□□□□□ -0.52
MSH5-218ENST00000494646 TRIM17Q9Y577 477 aa11.82□□□□□ -0.52
MSH5-218ENST00000494646 CENPFP49454 3210 aa11.82□□□□□ -0.52
MSH5-218ENST00000494646 SPDYE5A6NIY4 337 aa11.81□□□□□ -0.52
MSH5-218ENST00000494646 MCAMP43121 646 aa11.81□□□□□ -0.52
MSH5-218ENST00000494646 TAF1CQ15572 869 aaPredicted RBP11.81□□□□□ -0.52
MSH5-218ENST00000494646 TNNI3KQ59H18 835 aa11.81□□□□□ -0.52
MSH5-218ENST00000494646 TTC39AQ5SRH9 613 aa11.81□□□□□ -0.52
MSH5-218ENST00000494646 SH3BP5LQ7L8J4 393 aa11.81□□□□□ -0.52
MSH5-218ENST00000494646 FAM43AQ8N2R8 423 aa11.81□□□□□ -0.52
MSH5-218ENST00000494646 FAM163AQ96GL9 167 aaPredicted RBP11.81□□□□□ -0.52
MSH5-218ENST00000494646 DBNDD2Q9BQY9 259 aa11.81□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 9.5 ms