RNA–Protein interactions for RNA: ENST00000488058.1

RNF38-208, Transcript of ring finger protein 38, human

TSL 3

Gene RNF38, Length 582 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
RNF38-208	ENST00000488058	SLC10A4	Q96EP9	437 aa		29.16	■■■□□ 2.26
RNF38-208	ENST00000488058	CLMN	Q96JQ2	1002 aa		29.16	■■■□□ 2.26
RNF38-208	ENST00000488058	CHMP4B	Q9H444	224 aa	Known RBP	29.16	■■■□□ 2.26
RNF38-208	ENST00000488058	CCDC158	Q5M9N0	1113 aa		29.15	■■■□□ 2.26
RNF38-208	ENST00000488058	ZBTB40	Q9NUA8	1239 aa		29.15	■■■□□ 2.26
RNF38-208	ENST00000488058	MCAM	P43121	646 aa		29.14	■■■□□ 2.26
RNF38-208	ENST00000488058	TBC1D9	Q6ZT07	1266 aa		29.14	■■■□□ 2.26
RNF38-208	ENST00000488058	FAM83A	Q86UY5	434 aa		29.14	■■■□□ 2.26
RNF38-208	ENST00000488058	REM2	Q8IYK8	340 aa	Predicted RBP	29.14	■■■□□ 2.26
RNF38-208	ENST00000488058	USP40	Q9NVE5	1235 aa		29.14	■■■□□ 2.26
RNF38-208	ENST00000488058	OTOF	Q9HC10	1997 aa		29.13	■■■□□ 2.25
RNF38-208	ENST00000488058	TRPA1	O75762	1119 aa		29.13	■■■□□ 2.25
RNF38-208	ENST00000488058	PDE3A	Q14432	1141 aa		29.13	■■■□□ 2.25
RNF38-208	ENST00000488058	FKBP1C	Q5VVH2	108 aa		29.13	■■■□□ 2.25
RNF38-208	ENST00000488058	ERC1	Q8IUD2	1116 aa		29.13	■■■□□ 2.25
RNF38-208	ENST00000488058	SLF2	Q8IX21	1173 aa		29.13	■■■□□ 2.25
RNF38-208	ENST00000488058	RPAP2	Q8IXW5	612 aa	Predicted RBP	29.13	■■■□□ 2.25
RNF38-208	ENST00000488058	CCDC8	Q9H0W5	538 aa	Predicted RBP	29.13	■■■□□ 2.25
RNF38-208	ENST00000488058	SNRK	Q9NRH2	765 aa		29.13	■■■□□ 2.25
RNF38-208	ENST00000488058	RNF186	Q9NXI6	227 aa		29.13	■■■□□ 2.25
RNF38-208	ENST00000488058	TCP10	Q12799	353 aa		29.12	■■■□□ 2.25
RNF38-208	ENST00000488058	SPRYD7	Q5W111	196 aa		29.12	■■■□□ 2.25
RNF38-208	ENST00000488058	ANKRD13A	Q8IZ07	590 aa		29.12	■■■□□ 2.25
RNF38-208	ENST00000488058	RAI14	Q9P0K7	980 aa		29.12	■■■□□ 2.25
RNF38-208	ENST00000488058	AK9	Q5TCS8	1911 aa		29.12	■■■□□ 2.25
RNF38-208	ENST00000488058	APBB1	O00213	710 aa		29.11	■■■□□ 2.25
RNF38-208	ENST00000488058	HMMR	O75330	724 aa		29.11	■■■□□ 2.25
RNF38-208	ENST00000488058	MECOM	Q03112	1051 aa		29.11	■■■□□ 2.25
RNF38-208	ENST00000488058	TLR7	Q9NYK1	1049 aa	Known RBP	29.11	■■■□□ 2.25
RNF38-208	ENST00000488058	DBNL	Q9UJU6	430 aa	Known RBP	29.11	■■■□□ 2.25
RNF38-208	ENST00000488058	NFIA	Q12857	509 aa		29.1	■■■□□ 2.25
RNF38-208	ENST00000488058	HSP90AB4P	Q58FF6	505 aa		29.1	■■■□□ 2.25
RNF38-208	ENST00000488058	EAF2	Q96CJ1	260 aa	Predicted RBP	29.1	■■■□□ 2.25
RNF38-208	ENST00000488058	WNK4	Q96J92	1243 aa		29.1	■■■□□ 2.25
RNF38-208	ENST00000488058	SAGE1	Q9NXZ1	904 aa		29.1	■■■□□ 2.25
RNF38-208	ENST00000488058	GAK	O14976	1311 aa		29.1	■■■□□ 2.25
RNF38-208	ENST00000488058	BTD	P43251	543 aa		29.09	■■■□□ 2.25
RNF38-208	ENST00000488058	FAM151A	Q8WW52	585 aa		29.09	■■■□□ 2.25
RNF38-208	ENST00000488058	BCL11A	Q9H165	835 aa		29.09	■■■□□ 2.25
RNF38-208	ENST00000488058	ELP3	Q9H9T3	547 aa		29.09	■■■□□ 2.25
RNF38-208	ENST00000488058	LRP2BP	Q9P2M1	347 aa		29.09	■■■□□ 2.25
RNF38-208	ENST00000488058	MROH7-TTC4	A0A0A0MT08	1334 aa		29.09	■■■□□ 2.25
RNF38-208	ENST00000488058	UNCX	A6NJT0	531 aa		29.08	■■■□□ 2.25
RNF38-208	ENST00000488058	SREBF2	Q12772	1141 aa		29.08	■■■□□ 2.25
RNF38-208	ENST00000488058	AACS	Q86V21	672 aa		29.08	■■■□□ 2.25
RNF38-208	ENST00000488058	HOOK2	Q96ED9	719 aa		29.08	■■■□□ 2.25
RNF38-208	ENST00000488058	IL1RAPL2	Q9NP60	686 aa		29.08	■■■□□ 2.25
RNF38-208	ENST00000488058	RPAP1	Q9BWH6	1393 aa	Predicted RBP	29.08	■■■□□ 2.25
RNF38-208	ENST00000488058	CASP8AP2	Q9UKL3	1982 aa		29.08	■■■□□ 2.25
RNF38-208	ENST00000488058	SIRT2	Q8IXJ6	389 aa		29.07	■■■□□ 2.24
RNF38-208	ENST00000488058	GSTO1	P78417	241 aa		29.06	■■■□□ 2.24
RNF38-208	ENST00000488058	MAP3K9	P80192	1104 aa		29.06	■■■□□ 2.24
RNF38-208	ENST00000488058	RHPN1	Q8TCX5	695 aa		29.06	■■■□□ 2.24
RNF38-208	ENST00000488058	FAM198A	Q9UFP1	575 aa		29.06	■■■□□ 2.24
RNF38-208	ENST00000488058	CSAD	Q9Y600	493 aa		29.06	■■■□□ 2.24
RNF38-208	ENST00000488058	CAPN15	O75808	1086 aa		29.05	■■■□□ 2.24
RNF38-208	ENST00000488058	LDHC	P07864	332 aa		29.05	■■■□□ 2.24
RNF38-208	ENST00000488058	ZBTB48	P10074	688 aa	Predicted RBP	29.05	■■■□□ 2.24
RNF38-208	ENST00000488058	DCAF15	Q66K64	600 aa		29.05	■■■□□ 2.24
RNF38-208	ENST00000488058	MIGA2	Q7L4E1	593 aa		29.05	■■■□□ 2.24
RNF38-208	ENST00000488058	DDX55	Q8NHQ9	600 aa	Known RBP eCLIP	29.05	■■■□□ 2.24
RNF38-208	ENST00000488058	ZNF384	Q8TF68	577 aa		29.05	■■■□□ 2.24
RNF38-208	ENST00000488058	NSUN4	Q96CB9	384 aa	Known RBP	29.05	■■■□□ 2.24
RNF38-208	ENST00000488058	FAM163A	Q96GL9	167 aa	Predicted RBP	29.05	■■■□□ 2.24
RNF38-208	ENST00000488058	ZAP70	P43403	619 aa		29.04	■■■□□ 2.24
RNF38-208	ENST00000488058	TM4SF4	P48230	202 aa		29.04	■■■□□ 2.24
RNF38-208	ENST00000488058	RGS3	P49796	1198 aa		29.04	■■■□□ 2.24
RNF38-208	ENST00000488058	VGLL4	Q14135	290 aa		29.04	■■■□□ 2.24
RNF38-208	ENST00000488058	PPP1R3F	Q6ZSY5	799 aa	Predicted RBP	29.04	■■■□□ 2.24
RNF38-208	ENST00000488058	WRNIP1	Q96S55	665 aa		29.04	■■■□□ 2.24
RNF38-208	ENST00000488058	MAST2	Q6P0Q8	1798 aa		29.03	■■■□□ 2.24
RNF38-208	ENST00000488058	MANSC4	A6NHS7	340 aa	Predicted RBP	29.03	■■■□□ 2.24
RNF38-208	ENST00000488058	PICALM	Q13492	652 aa		29.03	■■■□□ 2.24
RNF38-208	ENST00000488058	OPTN	Q96CV9	577 aa		29.03	■■■□□ 2.24
RNF38-208	ENST00000488058	KIF1BP	Q96EK5	621 aa		29.03	■■■□□ 2.24
RNF38-208	ENST00000488058	ZNF512B	Q96KM6	892 aa	Predicted RBP	29.03	■■■□□ 2.24
RNF38-208	ENST00000488058	GPR75-ASB3	A0A0A6YYF3	556 aa		29.02	■■■□□ 2.24
RNF38-208	ENST00000488058	CYP2E1	P05181	493 aa	Predicted RBP	29.02	■■■□□ 2.24
RNF38-208	ENST00000488058	GJA5	P36382	358 aa		29.02	■■■□□ 2.24
RNF38-208	ENST00000488058	ZSCAN29	Q8IWY8	852 aa	Predicted RBP	29.02	■■■□□ 2.24
RNF38-208	ENST00000488058	ZFPM1	Q8IX07	1006 aa		29.02	■■■□□ 2.24
RNF38-208	ENST00000488058	IDI2	Q9BXS1	227 aa		29.02	■■■□□ 2.24
RNF38-208	ENST00000488058	ZNF341	Q9BYN7	854 aa		29.02	■■■□□ 2.24
RNF38-208	ENST00000488058	MYO5A	Q9Y4I1	1855 aa	Known RBP	29.02	■■■□□ 2.24
RNF38-208	ENST00000488058	DOCK2	Q92608	1830 aa		29.01	■■■□□ 2.24
RNF38-208	ENST00000488058	TBC1D8	O95759	1140 aa		29.01	■■■□□ 2.23
RNF38-208	ENST00000488058	CLASRP	Q8N2M8	674 aa	Known RBP	29.01	■■■□□ 2.23
RNF38-208	ENST00000488058	CNKSR2	Q8WXI2	1034 aa		29.01	■■■□□ 2.23
RNF38-208	ENST00000488058	ENTPD3	O75355	529 aa		29	■■■□□ 2.23
RNF38-208	ENST00000488058	NAA16	Q6N069	864 aa	Predicted RBP	29	■■■□□ 2.23
RNF38-208	ENST00000488058	ZKSCAN4	Q969J2	545 aa	Predicted RBP	29	■■■□□ 2.23
RNF38-208	ENST00000488058	NOL10	Q9BSC4	688 aa	Known RBP	29	■■■□□ 2.23
RNF38-208	ENST00000488058	OTUD5	Q96G74	571 aa		28.99	■■■□□ 2.23
RNF38-208	ENST00000488058	PIH1D3	Q9NQM4	214 aa	Known RBP	28.99	■■■□□ 2.23
RNF38-208	ENST00000488058	RFX7	Q2KHR2	1363 aa		28.99	■■■□□ 2.23
RNF38-208	ENST00000488058	LAMB1	P07942	1786 aa		28.98	■■■□□ 2.23
RNF38-208	ENST00000488058	RAB11FIP3	O75154	756 aa		28.98	■■■□□ 2.23
RNF38-208	ENST00000488058	WDHD1	O75717	1129 aa	Predicted RBP	28.98	■■■□□ 2.23
RNF38-208	ENST00000488058	RHBDL3	P58872	404 aa		28.98	■■■□□ 2.23
RNF38-208	ENST00000488058	DDX4	Q9NQI0	724 aa	Known RBP	28.98	■■■□□ 2.23

Retrieved 100 of 20,778 RNA–protein pairs in 27.4 ms