RNA–Protein interactions for RNA: ENST00000485412.1

SQSTM1-208, Transcript of sequestosome 1, humanhuman

TSL 2

Gene SQSTM1, Length 656 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-208ENST00000485412 SLFN5Q08AF3 891 aa17.36■□□□□ 0.37
SQSTM1-208ENST00000485412 ATG9AQ7Z3C6 839 aa17.36■□□□□ 0.37
SQSTM1-208ENST00000485412 ZKSCAN4Q969J2 545 aaPredicted RBP17.36■□□□□ 0.37
SQSTM1-208ENST00000485412 ZDHHC15Q96MV8 337 aa17.36■□□□□ 0.37
SQSTM1-208ENST00000485412 TRIOBPQ9H2D6 2365 aa17.36■□□□□ 0.37
SQSTM1-208ENST00000485412 E9PSI1 815 aa17.35■□□□□ 0.37
SQSTM1-208ENST00000485412 IRF6O14896 467 aa17.35■□□□□ 0.37
SQSTM1-208ENST00000485412 ZEB1P37275 1124 aaPredicted RBP17.35■□□□□ 0.37
SQSTM1-208ENST00000485412 PRMT2P55345 433 aa17.35■□□□□ 0.37
SQSTM1-208ENST00000485412 PPIL2Q13356 520 aa17.35■□□□□ 0.37
SQSTM1-208ENST00000485412 PUM3Q15397 648 aaKnown RBP17.35■□□□□ 0.37
SQSTM1-208ENST00000485412 DCAF15Q66K64 600 aa17.35■□□□□ 0.37
SQSTM1-208ENST00000485412 MYH2Q9UKX2 1941 aa17.35■□□□□ 0.37
SQSTM1-208ENST00000485412 EYA2O00167 538 aa17.34■□□□□ 0.37
SQSTM1-208ENST00000485412 FAM83AQ86UY5 434 aa17.34■□□□□ 0.37
SQSTM1-208ENST00000485412 SIL1Q9H173 461 aa17.34■□□□□ 0.37
SQSTM1-208ENST00000485412 DOCK2Q92608 1830 aa17.33■□□□□ 0.37
SQSTM1-208ENST00000485412 MAST3O60307 1309 aa17.33■□□□□ 0.36
SQSTM1-208ENST00000485412 DIXDC1Q155Q3 683 aa17.33■□□□□ 0.36
SQSTM1-208ENST00000485412 MIGA2Q7L4E1 593 aa17.33■□□□□ 0.36
SQSTM1-208ENST00000485412 DPF3Q92784 378 aa17.33■□□□□ 0.36
SQSTM1-208ENST00000485412 KIF16BQ96L93 1317 aa17.32■□□□□ 0.36
SQSTM1-208ENST00000485412 IFIT1P09914 478 aaKnown RBP17.32■□□□□ 0.36
SQSTM1-208ENST00000485412 HOXD10P28358 340 aa17.32■□□□□ 0.36
SQSTM1-208ENST00000485412 PRDX5P30044 214 aa17.32■□□□□ 0.36
SQSTM1-208ENST00000485412 FKBP1CQ5VVH2 108 aa17.32■□□□□ 0.36
SQSTM1-208ENST00000485412 CHRDL2Q6WN34 429 aa17.32■□□□□ 0.36
SQSTM1-208ENST00000485412 ZNF341Q9BYN7 854 aa17.32■□□□□ 0.36
SQSTM1-208ENST00000485412 SMC4Q9NTJ3 1288 aa17.32■□□□□ 0.36
SQSTM1-208ENST00000485412 CPA4Q9UI42 421 aa17.32■□□□□ 0.36
SQSTM1-208ENST00000485412 DAGLAQ9Y4D2 1042 aa17.32■□□□□ 0.36
SQSTM1-208ENST00000485412 RPAP1Q9BWH6 1393 aaPredicted RBP17.31■□□□□ 0.36
SQSTM1-208ENST00000485412 SLC5A1P13866 664 aa17.31■□□□□ 0.36
SQSTM1-208ENST00000485412 INPP5BP32019 993 aa17.31■□□□□ 0.36
SQSTM1-208ENST00000485412 PSMC4P43686 418 aa17.31■□□□□ 0.36
SQSTM1-208ENST00000485412 PPATQ06203 517 aa17.31■□□□□ 0.36
SQSTM1-208ENST00000485412 NFIAQ12857 509 aa17.31■□□□□ 0.36
SQSTM1-208ENST00000485412 MTFR1Q15390 333 aa17.31■□□□□ 0.36
SQSTM1-208ENST00000485412 C17orf99Q6UX52 265 aa17.31■□□□□ 0.36
SQSTM1-208ENST00000485412 GOLGA6L2Q8N9W4 650 aaPredicted RBP17.31■□□□□ 0.36
SQSTM1-208ENST00000485412 RAET1EQ8TD07 263 aa17.31■□□□□ 0.36
SQSTM1-208ENST00000485412 SRRDQ9UH36 339 aa17.31■□□□□ 0.36
SQSTM1-208ENST00000485412 PA2G4Q9UQ80 394 aaKnown RBP17.31■□□□□ 0.36
SQSTM1-208ENST00000485412 FMNL1O95466 1100 aaPredicted RBP17.3■□□□□ 0.36
SQSTM1-208ENST00000485412 TCP10Q12799 353 aa17.3■□□□□ 0.36
SQSTM1-208ENST00000485412 HHIPL2Q6UWX4 724 aa17.3■□□□□ 0.36
SQSTM1-208ENST00000485412 ANKRD23Q86SG2 305 aa17.3■□□□□ 0.36
SQSTM1-208ENST00000485412 NKX2-3Q8TAU0 364 aa17.3■□□□□ 0.36
SQSTM1-208ENST00000485412 LPIN2Q92539 896 aa17.3■□□□□ 0.36
SQSTM1-208ENST00000485412 MRIQ9BWK5 157 aa17.3■□□□□ 0.36
SQSTM1-208ENST00000485412 SUGT1Q9Y2Z0 365 aa17.3■□□□□ 0.36
SQSTM1-208ENST00000485412 MGAMO43451 1857 aa17.3■□□□□ 0.36
SQSTM1-208ENST00000485412 PTPRFP10586 1907 aa17.29■□□□□ 0.36
SQSTM1-208ENST00000485412 MYPNQ86TC9 1320 aa17.29■□□□□ 0.36
SQSTM1-208ENST00000485412 PDHXO00330 501 aa17.29■□□□□ 0.36
SQSTM1-208ENST00000485412 ADORA1P30542 326 aa17.29■□□□□ 0.36
SQSTM1-208ENST00000485412 GRK4P32298 578 aa17.29■□□□□ 0.36
SQSTM1-208ENST00000485412 PHKA1P46020 1223 aa17.29■□□□□ 0.36
SQSTM1-208ENST00000485412 ALDH1L2Q3SY69 923 aa17.29■□□□□ 0.36
SQSTM1-208ENST00000485412 CDC42EP5Q6NZY7 148 aa17.29■□□□□ 0.36
SQSTM1-208ENST00000485412 ZFPM1Q8IX07 1006 aa17.29■□□□□ 0.36
SQSTM1-208ENST00000485412 TRMT2AQ8IZ69 625 aaKnown RBP17.29■□□□□ 0.36
SQSTM1-208ENST00000485412 SHISA4Q96DD7 197 aa17.29■□□□□ 0.36
SQSTM1-208ENST00000485412 TRIM47Q96LD4 638 aa17.29■□□□□ 0.36
SQSTM1-208ENST00000485412 BIN2Q9UBW5 565 aaPredicted RBP17.29■□□□□ 0.36
SQSTM1-208ENST00000485412 SLURP2P0DP57 97 aa17.28■□□□□ 0.36
SQSTM1-208ENST00000485412 OSBPP22059 807 aa17.28■□□□□ 0.36
SQSTM1-208ENST00000485412 CTGFP29279 349 aa17.28■□□□□ 0.36
SQSTM1-208ENST00000485412 ATP2B3Q16720 1220 aa17.28■□□□□ 0.36
SQSTM1-208ENST00000485412 WDR66Q8TBY9 1149 aa17.28■□□□□ 0.36
SQSTM1-208ENST00000485412 HTATIP2Q9BUP3 242 aa17.28■□□□□ 0.36
SQSTM1-208ENST00000485412 FAM198AQ9UFP1 575 aa17.28■□□□□ 0.36
SQSTM1-208ENST00000485412 NOB1Q9ULX3 412 aaKnown RBP17.28■□□□□ 0.36
SQSTM1-208ENST00000485412 LRRFIP2Q9Y608 721 aaKnown RBP17.28■□□□□ 0.36
SQSTM1-208ENST00000485412 PHIPQ8WWQ0 1821 aa17.28■□□□□ 0.36
SQSTM1-208ENST00000485412 UBTFL1P0CB47 393 aaPredicted RBP17.27■□□□□ 0.36
SQSTM1-208ENST00000485412 CCL5P13501 91 aa17.27■□□□□ 0.36
SQSTM1-208ENST00000485412 UBXN2AP68543 259 aa17.27■□□□□ 0.36
SQSTM1-208ENST00000485412 FAM151AQ8WW52 585 aa17.27■□□□□ 0.36
SQSTM1-208ENST00000485412 MEIS3Q99687 375 aa17.27■□□□□ 0.36
SQSTM1-208ENST00000485412 RBM27Q9P2N5 1060 aaKnown RBP17.27■□□□□ 0.36
SQSTM1-208ENST00000485412 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP17.27■□□□□ 0.36
SQSTM1-208ENST00000485412 MOGSQ13724 837 aa17.26■□□□□ 0.35
SQSTM1-208ENST00000485412 PARK7Q99497 189 aaKnown RBP17.26■□□□□ 0.35
SQSTM1-208ENST00000485412 RNF208Q9H0X6 261 aa17.26■□□□□ 0.35
SQSTM1-208ENST00000485412 KCNH4Q9UQ05 1017 aa17.26■□□□□ 0.35
SQSTM1-208ENST00000485412 ATRNL1Q5VV63 1379 aa17.26■□□□□ 0.35
SQSTM1-208ENST00000485412 ADGRA2Q96PE1 1338 aa17.25■□□□□ 0.35
SQSTM1-208ENST00000485412 CIAO1O76071 339 aa17.25■□□□□ 0.35
SQSTM1-208ENST00000485412 GJB1P08034 283 aa17.25■□□□□ 0.35
SQSTM1-208ENST00000485412 GJA8P48165 433 aa17.25■□□□□ 0.35
SQSTM1-208ENST00000485412 ZNF112Q9UJU3 913 aa17.25■□□□□ 0.35
SQSTM1-208ENST00000485412 DOCK1Q14185 1865 aa17.24■□□□□ 0.35
SQSTM1-208ENST00000485412 LDHBP07195 334 aaKnown RBP17.24■□□□□ 0.35
SQSTM1-208ENST00000485412 FCGRTP55899 365 aa17.24■□□□□ 0.35
SQSTM1-208ENST00000485412 CEP126Q9P2H0 1117 aa17.24■□□□□ 0.35
SQSTM1-208ENST00000485412 NR2E3Q9Y5X4 410 aa17.24■□□□□ 0.35
SQSTM1-208ENST00000485412 RFX7Q2KHR2 1363 aa17.24■□□□□ 0.35
SQSTM1-208ENST00000485412 SZT2Q5T011 3432 aa17.23■□□□□ 0.35
SQSTM1-208ENST00000485412 PRKCZQ05513 592 aa17.23■□□□□ 0.35
Retrieved 100 of 20,778 RNA–protein pairs in 29.1 ms