RNA–Protein interactions for RNA: ENST00000482065.1

LIMS3-204, Transcript of LIM zinc finger domain containing 3, humanhuman

TSL 1 (best)

Gene LIMS3, Length 690 nt, Biotype retained intron, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS3-204ENST00000482065 ABCF2Q9UG63 623 aa18.4■□□□□ 0.54
LIMS3-204ENST00000482065 LAMB1P07942 1786 aa18.4■□□□□ 0.54
LIMS3-204ENST00000482065 MYH2Q9UKX2 1941 aa18.39■□□□□ 0.53
LIMS3-204ENST00000482065 CCDC85CA6NKD9 419 aa18.39■□□□□ 0.53
LIMS3-204ENST00000482065 MAP3K9P80192 1104 aa18.39■□□□□ 0.53
LIMS3-204ENST00000482065 TCP10Q12799 353 aa18.39■□□□□ 0.53
LIMS3-204ENST00000482065 NFIAQ12857 509 aa18.39■□□□□ 0.53
LIMS3-204ENST00000482065 VGLL4Q14135 290 aa18.39■□□□□ 0.53
LIMS3-204ENST00000482065 PI16Q6UXB8 463 aa18.39■□□□□ 0.53
LIMS3-204ENST00000482065 IFNL1Q8IU54 200 aa18.39■□□□□ 0.53
LIMS3-204ENST00000482065 ZNF296Q8WUU4 475 aaPredicted RBP18.39■□□□□ 0.53
LIMS3-204ENST00000482065 OPTNQ96CV9 577 aa18.39■□□□□ 0.53
LIMS3-204ENST00000482065 USP40Q9NVE5 1235 aa18.39■□□□□ 0.53
LIMS3-204ENST00000482065 PDS5AQ29RF7 1337 aaKnown RBP18.39■□□□□ 0.53
LIMS3-204ENST00000482065 RPAP1Q9BWH6 1393 aaPredicted RBP18.39■□□□□ 0.53
LIMS3-204ENST00000482065 IGF2BP3O00425 579 aaKnown RBP eCLIP18.38■□□□□ 0.53
LIMS3-204ENST00000482065 OS9Q13438 667 aaPredicted RBP18.38■□□□□ 0.53
LIMS3-204ENST00000482065 GORABQ5T7V8 394 aa18.38■□□□□ 0.53
LIMS3-204ENST00000482065 DZIP1Q86YF9 867 aaKnown RBP18.38■□□□□ 0.53
LIMS3-204ENST00000482065 HMG20BQ9P0W2 317 aa18.38■□□□□ 0.53
LIMS3-204ENST00000482065 GPR25O00155 361 aa18.37■□□□□ 0.53
LIMS3-204ENST00000482065 SURF6O75683 361 aaKnown RBP18.37■□□□□ 0.53
LIMS3-204ENST00000482065 INHBEP58166 350 aa18.37■□□□□ 0.53
LIMS3-204ENST00000482065 MIGA2Q7L4E1 593 aa18.37■□□□□ 0.53
LIMS3-204ENST00000482065 FAM151AQ8WW52 585 aa18.37■□□□□ 0.53
LIMS3-204ENST00000482065 WRNIP1Q96S55 665 aa18.37■□□□□ 0.53
LIMS3-204ENST00000482065 FAM198AQ9UFP1 575 aa18.37■□□□□ 0.53
LIMS3-204ENST00000482065 CSADQ9Y600 493 aa18.37■□□□□ 0.53
LIMS3-204ENST00000482065 GAKO14976 1311 aa18.37■□□□□ 0.53
LIMS3-204ENST00000482065 ARID4AP29374 1257 aaPredicted RBP18.36■□□□□ 0.53
LIMS3-204ENST00000482065 TNNI3KQ59H18 835 aa18.36■□□□□ 0.53
LIMS3-204ENST00000482065 CTU1Q7Z7A3 348 aaKnown RBP18.36■□□□□ 0.53
LIMS3-204ENST00000482065 ZFPM1Q8IX07 1006 aa18.36■□□□□ 0.53
LIMS3-204ENST00000482065 SPATA5Q8NB90 893 aa18.36■□□□□ 0.53
LIMS3-204ENST00000482065 CFHR5Q9BXR6 569 aa18.36■□□□□ 0.53
LIMS3-204ENST00000482065 FPGT-TNNI3KV9GXZ4 949 aa18.36■□□□□ 0.53
LIMS3-204ENST00000482065 AK9Q5TCS8 1911 aa18.35■□□□□ 0.53
LIMS3-204ENST00000482065 ALDH1A1P00352 501 aa18.35■□□□□ 0.53
LIMS3-204ENST00000482065 MCAMP43121 646 aa18.35■□□□□ 0.53
LIMS3-204ENST00000482065 SPTY2D1Q68D10 685 aaPredicted RBP18.35■□□□□ 0.53
LIMS3-204ENST00000482065 CEP85Q6P2H3 762 aa18.35■□□□□ 0.53
LIMS3-204ENST00000482065 TBC1D9Q6ZT07 1266 aa18.35■□□□□ 0.53
LIMS3-204ENST00000482065 ERICH6Q7L0X2 663 aa18.35■□□□□ 0.53
LIMS3-204ENST00000482065 ZKSCAN4Q969J2 545 aaPredicted RBP18.35■□□□□ 0.53
LIMS3-204ENST00000482065 HOOK2Q96ED9 719 aa18.35■□□□□ 0.53
LIMS3-204ENST00000482065 OTUD5Q96G74 571 aa18.35■□□□□ 0.53
LIMS3-204ENST00000482065 PTPN18Q99952 460 aa18.35■□□□□ 0.53
LIMS3-204ENST00000482065 DBNDD2Q9BQY9 259 aa18.35■□□□□ 0.53
LIMS3-204ENST00000482065 SNCAIPQ9Y6H5 919 aa18.35■□□□□ 0.53
LIMS3-204ENST00000482065 TESPA1A2RU30 521 aaPredicted RBP18.34■□□□□ 0.53
LIMS3-204ENST00000482065 MECOMQ03112 1051 aa18.34■□□□□ 0.53
LIMS3-204ENST00000482065 NOM1Q5C9Z4 860 aaKnown RBP18.34■□□□□ 0.53
LIMS3-204ENST00000482065 DCAF15Q66K64 600 aa18.34■□□□□ 0.53
LIMS3-204ENST00000482065 ZNF384Q8TF68 577 aa18.34■□□□□ 0.53
LIMS3-204ENST00000482065 MS4A4AQ96JQ5 239 aa18.34■□□□□ 0.53
LIMS3-204ENST00000482065 ZNF341Q9BYN7 854 aa18.34■□□□□ 0.53
LIMS3-204ENST00000482065 GPR108Q9NPR9 543 aa18.34■□□□□ 0.53
LIMS3-204ENST00000482065 NOP58Q9Y2X3 529 aaKnown RBP18.34■□□□□ 0.53
LIMS3-204ENST00000482065 RFX7Q2KHR2 1363 aa18.33■□□□□ 0.53
LIMS3-204ENST00000482065 MROH7-TTC4A0A0A0MT08 1334 aa18.33■□□□□ 0.53
LIMS3-204ENST00000482065 SPDYE5A6NIY4 337 aa18.33■□□□□ 0.52
LIMS3-204ENST00000482065 INPP5BP32019 993 aa18.33■□□□□ 0.52
LIMS3-204ENST00000482065 BTDP43251 543 aa18.33■□□□□ 0.52
LIMS3-204ENST00000482065 RGS3P49796 1198 aa18.33■□□□□ 0.52
LIMS3-204ENST00000482065 SLF2Q8IX21 1173 aa18.33■□□□□ 0.52
LIMS3-204ENST00000482065 BRI3BPQ8WY22 251 aa18.33■□□□□ 0.52
LIMS3-204ENST00000482065 FAM163AQ96GL9 167 aaPredicted RBP18.33■□□□□ 0.52
LIMS3-204ENST00000482065 FKTNO75072 461 aa18.32■□□□□ 0.52
LIMS3-204ENST00000482065 UQCRFS1P1P0C7P4 283 aa18.32■□□□□ 0.52
LIMS3-204ENST00000482065 TTC39AQ5SRH9 613 aa18.32■□□□□ 0.52
LIMS3-204ENST00000482065 IDI2Q9BXS1 227 aa18.32■□□□□ 0.52
LIMS3-204ENST00000482065 SNRKQ9NRH2 765 aa18.32■□□□□ 0.52
LIMS3-204ENST00000482065 CCL15-CCL14A0A0B4J2E2 113 aa18.31■□□□□ 0.52
LIMS3-204ENST00000482065 WDHD1O75717 1129 aaPredicted RBP18.31■□□□□ 0.52
LIMS3-204ENST00000482065 GTF2A2P52657 109 aa18.31■□□□□ 0.52
LIMS3-204ENST00000482065 CRHR2Q13324 411 aa18.31■□□□□ 0.52
LIMS3-204ENST00000482065 CCL15Q16663 113 aa18.31■□□□□ 0.52
LIMS3-204ENST00000482065 OTUD7BQ6GQQ9 843 aa18.31■□□□□ 0.52
LIMS3-204ENST00000482065 ERO1BQ86YB8 467 aa18.31■□□□□ 0.52
LIMS3-204ENST00000482065 NSUN4Q96CB9 384 aaKnown RBP18.31■□□□□ 0.52
LIMS3-204ENST00000482065 DDX4Q9NQI0 724 aaKnown RBP18.31■□□□□ 0.52
LIMS3-204ENST00000482065 TLR7Q9NYK1 1049 aaKnown RBP18.31■□□□□ 0.52
LIMS3-204ENST00000482065 RAI14Q9P0K7 980 aa18.31■□□□□ 0.52
LIMS3-204ENST00000482065 RCAN3Q9UKA8 241 aa18.31■□□□□ 0.52
LIMS3-204ENST00000482065 DOCK2Q92608 1830 aa18.3■□□□□ 0.52
LIMS3-204ENST00000482065 GPR75-ASB3A0A0A6YYF3 556 aa18.3■□□□□ 0.52
LIMS3-204ENST00000482065 ENTPD3O75355 529 aa18.3■□□□□ 0.52
LIMS3-204ENST00000482065 MS4A1P11836 297 aa18.3■□□□□ 0.52
LIMS3-204ENST00000482065 RHBDL3P58872 404 aa18.3■□□□□ 0.52
LIMS3-204ENST00000482065 PICALMQ13492 652 aa18.3■□□□□ 0.52
LIMS3-204ENST00000482065 CCDC158Q5M9N0 1113 aa18.3■□□□□ 0.52
LIMS3-204ENST00000482065 SH3BP5LQ7L8J4 393 aa18.3■□□□□ 0.52
LIMS3-204ENST00000482065 CCDC8Q9H0W5 538 aaPredicted RBP18.3■□□□□ 0.52
LIMS3-204ENST00000482065 DBNLQ9UJU6 430 aaKnown RBP18.3■□□□□ 0.52
LIMS3-204ENST00000482065 EXOC6BQ9Y2D4 811 aa18.3■□□□□ 0.52
LIMS3-204ENST00000482065 COG6Q9Y2V7 657 aa18.3■□□□□ 0.52
LIMS3-204ENST00000482065 ATRNL1Q5VV63 1379 aa18.3■□□□□ 0.52
LIMS3-204ENST00000482065 IRF6O14896 467 aa18.29■□□□□ 0.52
LIMS3-204ENST00000482065 SLURP2P0DP57 97 aa18.29■□□□□ 0.52
LIMS3-204ENST00000482065 ZSCAN29Q8IWY8 852 aaPredicted RBP18.29■□□□□ 0.52
Retrieved 100 of 20,778 RNA–protein pairs in 50 ms