RNA–Protein interactions for RNA: ENST00000479177.1

USP48-208, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 3

Gene USP48, Length 686 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-208ENST00000479177 USP44Q9H0E7 712 aa8.34□□□□□ -1.07
USP48-208ENST00000479177 C1orf115Q9H7X2 142 aa8.34□□□□□ -1.07
USP48-208ENST00000479177 COL24A1Q17RW2 1714 aa8.34□□□□□ -1.07
USP48-208ENST00000479177 UTYO14607 1347 aa8.33□□□□□ -1.08
USP48-208ENST00000479177 KDM2BQ8NHM5 1336 aa8.33□□□□□ -1.08
USP48-208ENST00000479177 A0A087WZG4 1122 aa8.33□□□□□ -1.08
USP48-208ENST00000479177 ERVV-1B6SEH8 477 aa8.33□□□□□ -1.08
USP48-208ENST00000479177 RPS6KA4O75676 772 aa8.33□□□□□ -1.08
USP48-208ENST00000479177 CAMTA2O94983 1202 aa8.33□□□□□ -1.08
USP48-208ENST00000479177 GNAI3P08754 354 aa8.33□□□□□ -1.08
USP48-208ENST00000479177 GCKRQ14397 625 aa8.33□□□□□ -1.08
USP48-208ENST00000479177 AMIGO3Q86WK7 504 aa8.33□□□□□ -1.08
USP48-208ENST00000479177 ISCA1Q9BUE6 129 aa8.33□□□□□ -1.08
USP48-208ENST00000479177 QSER1Q2KHR3 1735 aa8.32□□□□□ -1.08
USP48-208ENST00000479177 POM121CA8CG34 1229 aa8.32□□□□□ -1.08
USP48-208ENST00000479177 ATP5J2-PTCD1G3V325 749 aa8.32□□□□□ -1.08
USP48-208ENST00000479177 GRM8O00222 908 aa8.32□□□□□ -1.08
USP48-208ENST00000479177 GNAI2P04899 355 aa8.32□□□□□ -1.08
USP48-208ENST00000479177 UBTFL1P0CB47 393 aaPredicted RBP8.32□□□□□ -1.08
USP48-208ENST00000479177 TCIRG1Q13488 830 aa8.32□□□□□ -1.08
USP48-208ENST00000479177 HLFQ16534 295 aa8.32□□□□□ -1.08
USP48-208ENST00000479177 RNFT1Q5M7Z0 435 aa8.32□□□□□ -1.08
USP48-208ENST00000479177 CEP85Q6P2H3 762 aa8.32□□□□□ -1.08
USP48-208ENST00000479177 NPM2Q86SE8 214 aaKnown RBP8.32□□□□□ -1.08
USP48-208ENST00000479177 MEIOBQ8N635 442 aa8.32□□□□□ -1.08
USP48-208ENST00000479177 ZNF784Q8NCA9 323 aaPredicted RBP8.32□□□□□ -1.08
USP48-208ENST00000479177 WHAMMQ8TF30 809 aa8.32□□□□□ -1.08
USP48-208ENST00000479177 COL25A1Q9BXS0 654 aaPredicted RBP8.32□□□□□ -1.08
USP48-208ENST00000479177 LAMB2P55268 1798 aa8.32□□□□□ -1.08
USP48-208ENST00000479177 NBPF7P0C2Y1 421 aaPredicted RBP8.31□□□□□ -1.08
USP48-208ENST00000479177 HMGB2P26583 209 aaKnown RBP8.31□□□□□ -1.08
USP48-208ENST00000479177 TRIM28Q13263 835 aaKnown RBP8.31□□□□□ -1.08
USP48-208ENST00000479177 HDAC1Q13547 482 aaPredicted RBP8.31□□□□□ -1.08
USP48-208ENST00000479177 ZNF827Q17R98 1081 aa8.31□□□□□ -1.08
USP48-208ENST00000479177 TSGA10IPQ3SY00 556 aa8.31□□□□□ -1.08
USP48-208ENST00000479177 HSP90AB3PQ58FF7 597 aa8.31□□□□□ -1.08
USP48-208ENST00000479177 ZNF385CQ66K41 422 aaPredicted RBP8.31□□□□□ -1.08
USP48-208ENST00000479177 SMIM5Q71RC9 77 aa8.31□□□□□ -1.08
USP48-208ENST00000479177 SIRT2Q8IXJ6 389 aa8.31□□□□□ -1.08
USP48-208ENST00000479177 ANKRD44Q8N8A2 993 aa8.31□□□□□ -1.08
USP48-208ENST00000479177 CCDC191Q8NCU4 936 aa8.31□□□□□ -1.08
USP48-208ENST00000479177 CWC25Q9NXE8 425 aaPredicted RBP8.31□□□□□ -1.08
USP48-208ENST00000479177 RTCBQ9Y3I0 505 aaKnown RBP8.31□□□□□ -1.08
USP48-208ENST00000479177 LRRFIP2Q9Y608 721 aaKnown RBP8.31□□□□□ -1.08
USP48-208ENST00000479177 UBN2Q6ZU65 1347 aa8.3□□□□□ -1.08
USP48-208ENST00000479177 USP42Q9H9J4 1324 aaKnown RBP8.3□□□□□ -1.08
USP48-208ENST00000479177 RAD21O60216 631 aa8.3□□□□□ -1.08
USP48-208ENST00000479177 LILRA1O75019 489 aa8.3□□□□□ -1.08
USP48-208ENST00000479177 IGHDP01880 384 aa8.3□□□□□ -1.08
USP48-208ENST00000479177 ADD1P35611 737 aaKnown RBP8.3□□□□□ -1.08
USP48-208ENST00000479177 CASP7P55210 303 aa8.3□□□□□ -1.08
USP48-208ENST00000479177 GPAT2Q6NUI2 795 aa8.3□□□□□ -1.08
USP48-208ENST00000479177 CENPQQ7L2Z9 268 aaPredicted RBP8.3□□□□□ -1.08
USP48-208ENST00000479177 ZNF34Q8IZ26 560 aa8.3□□□□□ -1.08
USP48-208ENST00000479177 SUCLG2Q96I99 432 aa8.3□□□□□ -1.08
USP48-208ENST00000479177 AGBL1Q96MI9 1066 aa8.3□□□□□ -1.08
USP48-208ENST00000479177 ARXQ96QS3 562 aa8.3□□□□□ -1.08
USP48-208ENST00000479177 CAMKK2Q96RR4 588 aa8.3□□□□□ -1.08
USP48-208ENST00000479177 CYLDQ9NQC7 956 aa8.3□□□□□ -1.08
USP48-208ENST00000479177 C9orf78Q9NZ63 289 aaPredicted RBP8.3□□□□□ -1.08
USP48-208ENST00000479177 CEP126Q9P2H0 1117 aa8.3□□□□□ -1.08
USP48-208ENST00000479177 NARFQ9UHQ1 456 aa8.3□□□□□ -1.08
USP48-208ENST00000479177 MYH3P11055 1940 aa8.3□□□□□ -1.08
USP48-208ENST00000479177 H7C1W4 665 aa8.29□□□□□ -1.08
USP48-208ENST00000479177 PCCAP05165 728 aaPredicted RBP8.29□□□□□ -1.08
USP48-208ENST00000479177 GPTP24298 496 aa8.29□□□□□ -1.08
USP48-208ENST00000479177 SSFA2P28290 1259 aa8.29□□□□□ -1.08
USP48-208ENST00000479177 PTSQ03393 145 aa8.29□□□□□ -1.08
USP48-208ENST00000479177 MTX1Q13505 466 aa8.29□□□□□ -1.08
USP48-208ENST00000479177 UBE3BQ7Z3V4 1068 aa8.29□□□□□ -1.08
USP48-208ENST00000479177 NLRP10Q86W26 655 aa8.29□□□□□ -1.08
USP48-208ENST00000479177 RPAP2Q8IXW5 612 aaPredicted RBP8.29□□□□□ -1.08
USP48-208ENST00000479177 KAZALD1Q96I82 304 aa8.29□□□□□ -1.08
USP48-208ENST00000479177 RWDD1Q9H446 243 aaPredicted RBP8.29□□□□□ -1.08
USP48-208ENST00000479177 SRP68Q9UHB9 627 aaKnown RBP8.29□□□□□ -1.08
USP48-208ENST00000479177 ZNF652Q9Y2D9 606 aa8.29□□□□□ -1.08
USP48-208ENST00000479177 DDX60Q8IY21 1712 aaKnown RBP8.29□□□□□ -1.08
USP48-208ENST00000479177 FIGNL2A6NMB9 653 aa8.28□□□□□ -1.08
USP48-208ENST00000479177 UPP2O95045 317 aa8.28□□□□□ -1.08
USP48-208ENST00000479177 IRS1P35568 1242 aa8.28□□□□□ -1.08
USP48-208ENST00000479177 BAG6P46379 1132 aa8.28□□□□□ -1.08
USP48-208ENST00000479177 SCTRP47872 440 aa8.28□□□□□ -1.08
USP48-208ENST00000479177 DHX9Q08211 1270 aaKnown RBP8.28□□□□□ -1.08
USP48-208ENST00000479177 SF3B2Q13435 895 aaKnown RBP8.28□□□□□ -1.08
USP48-208ENST00000479177 EZH2Q15910 746 aaKnown RBP8.28□□□□□ -1.08
USP48-208ENST00000479177 WASHC4Q2M389 1173 aa8.28□□□□□ -1.08
USP48-208ENST00000479177 TRAPPC3LQ5T215 181 aa8.28□□□□□ -1.08
USP48-208ENST00000479177 USPL1Q5W0Q7 1092 aa8.28□□□□□ -1.08
USP48-208ENST00000479177 CLEC4GQ6UXB4 293 aa8.28□□□□□ -1.08
USP48-208ENST00000479177 ADAMTS19Q8TE59 1207 aa8.28□□□□□ -1.08
USP48-208ENST00000479177 CCDC85AQ96PX6 553 aaPredicted RBP8.28□□□□□ -1.08
USP48-208ENST00000479177 BICC1Q9H694 974 aaKnown RBP8.28□□□□□ -1.08
USP48-208ENST00000479177 PGPEP1Q9NXJ5 209 aa8.28□□□□□ -1.08
USP48-208ENST00000479177 HDAC5Q9UQL6 1122 aa8.28□□□□□ -1.08
USP48-208ENST00000479177 CDHR2Q9BYE9 1310 aa8.28□□□□□ -1.08
USP48-208ENST00000479177 CASZ1Q86V15 1759 aa8.27□□□□□ -1.08
USP48-208ENST00000479177 PNMA6EA0A0J9YXQ4 647 aa8.27□□□□□ -1.09
USP48-208ENST00000479177 RNF225M0QZC1 329 aaPredicted RBP8.27□□□□□ -1.09
USP48-208ENST00000479177 HMMRO75330 724 aa8.27□□□□□ -1.09
USP48-208ENST00000479177 RFC4P35249 363 aa8.27□□□□□ -1.09
Retrieved 100 of 20,778 RNA–protein pairs in 14.4 ms