RNA–Protein interactions for RNA: ENST00000476930.1

PTPRN-213, Transcript of protein tyrosine phosphatase, receptor type N, humanhuman

TSL 3

Gene PTPRN, Length 582 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRN-213ENST00000476930 FKBP1CQ5VVH2 108 aa13.8□□□□□ -0.2
PTPRN-213ENST00000476930 FAM83AQ86UY5 434 aa13.8□□□□□ -0.2
PTPRN-213ENST00000476930 SSH3Q8TE77 659 aa13.8□□□□□ -0.2
PTPRN-213ENST00000476930 CNKSR2Q8WXI2 1034 aa13.8□□□□□ -0.2
PTPRN-213ENST00000476930 ELP3Q9H9T3 547 aa13.8□□□□□ -0.2
PTPRN-213ENST00000476930 CDK5RAP2Q96SN8 1893 aa13.8□□□□□ -0.2
PTPRN-213ENST00000476930 ZBTB48P10074 688 aaPredicted RBP13.79□□□□□ -0.2
PTPRN-213ENST00000476930 NFIAQ12857 509 aa13.79□□□□□ -0.2
PTPRN-213ENST00000476930 MVPQ14764 893 aaKnown RBP13.79□□□□□ -0.2
PTPRN-213ENST00000476930 PI16Q6UXB8 463 aa13.79□□□□□ -0.2
PTPRN-213ENST00000476930 DDX55Q8NHQ9 600 aaKnown RBP eCLIP13.79□□□□□ -0.2
PTPRN-213ENST00000476930 ABCF2Q9UG63 623 aa13.79□□□□□ -0.2
PTPRN-213ENST00000476930 MANSC4A6NHS7 340 aaPredicted RBP13.78□□□□□ -0.2
PTPRN-213ENST00000476930 CCDC85CA6NKD9 419 aa13.78□□□□□ -0.2
PTPRN-213ENST00000476930 IGF2BP3O00425 579 aaKnown RBP eCLIP13.78□□□□□ -0.2
PTPRN-213ENST00000476930 SURF6O75683 361 aaKnown RBP13.78□□□□□ -0.2
PTPRN-213ENST00000476930 MAP3K9P80192 1104 aa13.78□□□□□ -0.2
PTPRN-213ENST00000476930 TCP10Q12799 353 aa13.78□□□□□ -0.2
PTPRN-213ENST00000476930 VGLL4Q14135 290 aa13.78□□□□□ -0.2
PTPRN-213ENST00000476930 GORABQ5T7V8 394 aa13.78□□□□□ -0.2
PTPRN-213ENST00000476930 IFNL1Q8IU54 200 aa13.78□□□□□ -0.2
PTPRN-213ENST00000476930 ZNF296Q8WUU4 475 aaPredicted RBP13.78□□□□□ -0.2
PTPRN-213ENST00000476930 OPTNQ96CV9 577 aa13.78□□□□□ -0.2
PTPRN-213ENST00000476930 USP40Q9NVE5 1235 aa13.78□□□□□ -0.2
PTPRN-213ENST00000476930 HMG20BQ9P0W2 317 aa13.78□□□□□ -0.2
PTPRN-213ENST00000476930 FAM198AQ9UFP1 575 aa13.78□□□□□ -0.2
PTPRN-213ENST00000476930 PDS5AQ29RF7 1337 aaKnown RBP13.78□□□□□ -0.2
PTPRN-213ENST00000476930 GPR25O00155 361 aa13.77□□□□□ -0.21
PTPRN-213ENST00000476930 GAKO14976 1311 aa13.77□□□□□ -0.21
PTPRN-213ENST00000476930 BRCA2P51587 3418 aa13.77□□□□□ -0.21
PTPRN-213ENST00000476930 OS9Q13438 667 aaPredicted RBP13.77□□□□□ -0.21
PTPRN-213ENST00000476930 TBC1D9Q6ZT07 1266 aa13.77□□□□□ -0.21
PTPRN-213ENST00000476930 MIGA2Q7L4E1 593 aa13.77□□□□□ -0.21
PTPRN-213ENST00000476930 ZFPM1Q8IX07 1006 aa13.77□□□□□ -0.21
PTPRN-213ENST00000476930 ZGPATQ8N5A5 531 aaKnown RBP13.77□□□□□ -0.21
PTPRN-213ENST00000476930 ZNF384Q8TF68 577 aa13.77□□□□□ -0.21
PTPRN-213ENST00000476930 FAM151AQ8WW52 585 aa13.77□□□□□ -0.21
PTPRN-213ENST00000476930 RPAP1Q9BWH6 1393 aaPredicted RBP13.77□□□□□ -0.21
PTPRN-213ENST00000476930 TNRC18O15417 2968 aaPredicted RBP13.76□□□□□ -0.21
PTPRN-213ENST00000476930 ARID4AP29374 1257 aaPredicted RBP13.76□□□□□ -0.21
PTPRN-213ENST00000476930 MCAMP43121 646 aa13.76□□□□□ -0.21
PTPRN-213ENST00000476930 INHBEP58166 350 aa13.76□□□□□ -0.21
PTPRN-213ENST00000476930 TNNI3KQ59H18 835 aa13.76□□□□□ -0.21
PTPRN-213ENST00000476930 CEP85Q6P2H3 762 aa13.76□□□□□ -0.21
PTPRN-213ENST00000476930 DZIP1Q86YF9 867 aaKnown RBP13.76□□□□□ -0.21
PTPRN-213ENST00000476930 SPATA5Q8NB90 893 aa13.76□□□□□ -0.21
PTPRN-213ENST00000476930 ZKSCAN4Q969J2 545 aaPredicted RBP13.76□□□□□ -0.21
PTPRN-213ENST00000476930 MS4A4AQ96JQ5 239 aa13.76□□□□□ -0.21
PTPRN-213ENST00000476930 WRNIP1Q96S55 665 aa13.76□□□□□ -0.21
PTPRN-213ENST00000476930 PTPN18Q99952 460 aa13.76□□□□□ -0.21
PTPRN-213ENST00000476930 DBNDD2Q9BQY9 259 aa13.76□□□□□ -0.21
PTPRN-213ENST00000476930 CFHR5Q9BXR6 569 aa13.76□□□□□ -0.21
PTPRN-213ENST00000476930 CSADQ9Y600 493 aa13.76□□□□□ -0.21
PTPRN-213ENST00000476930 SNCAIPQ9Y6H5 919 aa13.76□□□□□ -0.21
PTPRN-213ENST00000476930 FPGT-TNNI3KV9GXZ4 949 aa13.76□□□□□ -0.21
PTPRN-213ENST00000476930 TESPA1A2RU30 521 aaPredicted RBP13.75□□□□□ -0.21
PTPRN-213ENST00000476930 MECOMQ03112 1051 aa13.75□□□□□ -0.21
PTPRN-213ENST00000476930 SPTY2D1Q68D10 685 aaPredicted RBP13.75□□□□□ -0.21
PTPRN-213ENST00000476930 ERICH6Q7L0X2 663 aa13.75□□□□□ -0.21
PTPRN-213ENST00000476930 CTU1Q7Z7A3 348 aaKnown RBP13.75□□□□□ -0.21
PTPRN-213ENST00000476930 OTUD5Q96G74 571 aa13.75□□□□□ -0.21
PTPRN-213ENST00000476930 GPR108Q9NPR9 543 aa13.75□□□□□ -0.21
PTPRN-213ENST00000476930 NOP58Q9Y2X3 529 aaKnown RBP13.75□□□□□ -0.21
PTPRN-213ENST00000476930 MAST2Q6P0Q8 1798 aa13.75□□□□□ -0.21
PTPRN-213ENST00000476930 PTPRFP10586 1907 aa13.74□□□□□ -0.21
PTPRN-213ENST00000476930 FOCADQ5VW36 1801 aa13.74□□□□□ -0.21
PTPRN-213ENST00000476930 PHIPQ8WWQ0 1821 aa13.74□□□□□ -0.21
PTPRN-213ENST00000476930 MROH7-TTC4A0A0A0MT08 1334 aa13.74□□□□□ -0.21
PTPRN-213ENST00000476930 ALDH1A1P00352 501 aa13.74□□□□□ -0.21
PTPRN-213ENST00000476930 INPP5BP32019 993 aa13.74□□□□□ -0.21
PTPRN-213ENST00000476930 RGS3P49796 1198 aa13.74□□□□□ -0.21
PTPRN-213ENST00000476930 BRI3BPQ8WY22 251 aa13.74□□□□□ -0.21
PTPRN-213ENST00000476930 NSUN4Q96CB9 384 aaKnown RBP13.74□□□□□ -0.21
PTPRN-213ENST00000476930 FAM163AQ96GL9 167 aaPredicted RBP13.74□□□□□ -0.21
PTPRN-213ENST00000476930 ZNF341Q9BYN7 854 aa13.74□□□□□ -0.21
PTPRN-213ENST00000476930 SNRKQ9NRH2 765 aa13.74□□□□□ -0.21
PTPRN-213ENST00000476930 ATAD5Q96QE3 1844 aa13.74□□□□□ -0.21
PTPRN-213ENST00000476930 RFX7Q2KHR2 1363 aa13.73□□□□□ -0.21
PTPRN-213ENST00000476930 SPDYE5A6NIY4 337 aa13.73□□□□□ -0.21
PTPRN-213ENST00000476930 FKTNO75072 461 aa13.73□□□□□ -0.21
PTPRN-213ENST00000476930 UQCRFS1P1P0C7P4 283 aa13.73□□□□□ -0.21
PTPRN-213ENST00000476930 SLURP2P0DP57 97 aa13.73□□□□□ -0.21
PTPRN-213ENST00000476930 BTDP43251 543 aa13.73□□□□□ -0.21
PTPRN-213ENST00000476930 NOM1Q5C9Z4 860 aaKnown RBP13.73□□□□□ -0.21
PTPRN-213ENST00000476930 DCAF15Q66K64 600 aa13.73□□□□□ -0.21
PTPRN-213ENST00000476930 SH3BP5LQ7L8J4 393 aa13.73□□□□□ -0.21
PTPRN-213ENST00000476930 HOOK2Q96ED9 719 aa13.73□□□□□ -0.21
PTPRN-213ENST00000476930 IDI2Q9BXS1 227 aa13.73□□□□□ -0.21
PTPRN-213ENST00000476930 CCDC8Q9H0W5 538 aaPredicted RBP13.73□□□□□ -0.21
PTPRN-213ENST00000476930 DDX4Q9NQI0 724 aaKnown RBP13.73□□□□□ -0.21
PTPRN-213ENST00000476930 TLR7Q9NYK1 1049 aaKnown RBP13.73□□□□□ -0.21
PTPRN-213ENST00000476930 RCAN3Q9UKA8 241 aa13.73□□□□□ -0.21
PTPRN-213ENST00000476930 COG6Q9Y2V7 657 aa13.73□□□□□ -0.21
PTPRN-213ENST00000476930 DOCK1Q14185 1865 aa13.73□□□□□ -0.21
PTPRN-213ENST00000476930 ZSWIM8A7E2V4 1837 aa13.72□□□□□ -0.21
PTPRN-213ENST00000476930 GPR75-ASB3A0A0A6YYF3 556 aa13.72□□□□□ -0.21
PTPRN-213ENST00000476930 CCL15-CCL14A0A0B4J2E2 113 aa13.72□□□□□ -0.21
PTPRN-213ENST00000476930 WDHD1O75717 1129 aaPredicted RBP13.72□□□□□ -0.21
PTPRN-213ENST00000476930 RHBDL3P58872 404 aa13.72□□□□□ -0.21
PTPRN-213ENST00000476930 CRHR2Q13324 411 aa13.72□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 23.1 ms