RNA–Protein interactions for RNA: ENST00000476597.1

SEC13-214, Transcript of SEC13 homolog, nuclear pore and COPII coat complex component, humanhuman

TSL 2

Gene SEC13, Length 614 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SEC13-214ENST00000476597 VGLL4Q14135 290 aa13.35□□□□□ -0.27
SEC13-214ENST00000476597 MVPQ14764 893 aaKnown RBP13.35□□□□□ -0.27
SEC13-214ENST00000476597 ZGPATQ8N5A5 531 aaKnown RBP13.35□□□□□ -0.27
SEC13-214ENST00000476597 SSH3Q8TE77 659 aa13.35□□□□□ -0.27
SEC13-214ENST00000476597 OPTNQ96CV9 577 aa13.35□□□□□ -0.27
SEC13-214ENST00000476597 HOOK2Q96ED9 719 aa13.35□□□□□ -0.27
SEC13-214ENST00000476597 PTPN18Q99952 460 aa13.35□□□□□ -0.27
SEC13-214ENST00000476597 USP40Q9NVE5 1235 aa13.35□□□□□ -0.27
SEC13-214ENST00000476597 RLBP1P12271 317 aa13.34□□□□□ -0.27
SEC13-214ENST00000476597 RGS19P49795 217 aa13.34□□□□□ -0.27
SEC13-214ENST00000476597 NFIAQ12857 509 aa13.34□□□□□ -0.27
SEC13-214ENST00000476597 FTSJ3Q8IY81 847 aaKnown RBP13.34□□□□□ -0.27
SEC13-214ENST00000476597 CNKSR2Q8WXI2 1034 aa13.34□□□□□ -0.27
SEC13-214ENST00000476597 FAM163AQ96GL9 167 aaPredicted RBP13.34□□□□□ -0.27
SEC13-214ENST00000476597 MS4A4AQ96JQ5 239 aa13.34□□□□□ -0.27
SEC13-214ENST00000476597 CSADQ9Y600 493 aa13.34□□□□□ -0.27
SEC13-214ENST00000476597 FKTNO75072 461 aa13.33□□□□□ -0.28
SEC13-214ENST00000476597 PKN2Q16513 984 aaKnown RBP13.33□□□□□ -0.28
SEC13-214ENST00000476597 DCAF15Q66K64 600 aa13.33□□□□□ -0.28
SEC13-214ENST00000476597 SPTY2D1Q68D10 685 aaPredicted RBP13.33□□□□□ -0.28
SEC13-214ENST00000476597 OTUD7BQ6GQQ9 843 aa13.33□□□□□ -0.28
SEC13-214ENST00000476597 MIGA2Q7L4E1 593 aa13.33□□□□□ -0.28
SEC13-214ENST00000476597 GPR108Q9NPR9 543 aa13.33□□□□□ -0.28
SEC13-214ENST00000476597 HMG20BQ9P0W2 317 aa13.33□□□□□ -0.28
SEC13-214ENST00000476597 FAM198AQ9UFP1 575 aa13.33□□□□□ -0.28
SEC13-214ENST00000476597 ABCF2Q9UG63 623 aa13.33□□□□□ -0.28
SEC13-214ENST00000476597 GAKO14976 1311 aa13.33□□□□□ -0.28
SEC13-214ENST00000476597 RPAP1Q9BWH6 1393 aaPredicted RBP13.32□□□□□ -0.28
SEC13-214ENST00000476597 GTF2A2P52657 109 aa13.32□□□□□ -0.28
SEC13-214ENST00000476597 TCP10Q12799 353 aa13.32□□□□□ -0.28
SEC13-214ENST00000476597 GORABQ5T7V8 394 aa13.32□□□□□ -0.28
SEC13-214ENST00000476597 ITPRIPQ8IWB1 547 aa13.32□□□□□ -0.28
SEC13-214ENST00000476597 SLF2Q8IX21 1173 aa13.32□□□□□ -0.28
SEC13-214ENST00000476597 ZKSCAN4Q969J2 545 aaPredicted RBP13.32□□□□□ -0.28
SEC13-214ENST00000476597 WRNIP1Q96S55 665 aa13.32□□□□□ -0.28
SEC13-214ENST00000476597 IDI2Q9BXS1 227 aa13.32□□□□□ -0.28
SEC13-214ENST00000476597 ZNF341Q9BYN7 854 aa13.32□□□□□ -0.28
SEC13-214ENST00000476597 C1orf115Q9H7X2 142 aa13.32□□□□□ -0.28
SEC13-214ENST00000476597 ZNF112Q9UJU3 913 aa13.32□□□□□ -0.28
SEC13-214ENST00000476597 SNCAIPQ9Y6H5 919 aa13.32□□□□□ -0.28
SEC13-214ENST00000476597 ECM29Q5VYK3 1845 aa13.32□□□□□ -0.28
SEC13-214ENST00000476597 ARAP2Q8WZ64 1704 aa13.31□□□□□ -0.28
SEC13-214ENST00000476597 SPDYE5A6NIY4 337 aa13.31□□□□□ -0.28
SEC13-214ENST00000476597 SURF6O75683 361 aaKnown RBP13.31□□□□□ -0.28
SEC13-214ENST00000476597 ARID4AP29374 1257 aaPredicted RBP13.31□□□□□ -0.28
SEC13-214ENST00000476597 ERICH6Q7L0X2 663 aa13.31□□□□□ -0.28
SEC13-214ENST00000476597 ERO1BQ86YB8 467 aa13.31□□□□□ -0.28
SEC13-214ENST00000476597 DZIP1Q86YF9 867 aaKnown RBP13.31□□□□□ -0.28
SEC13-214ENST00000476597 ZFPM1Q8IX07 1006 aa13.31□□□□□ -0.28
SEC13-214ENST00000476597 SPATA5Q8NB90 893 aa13.31□□□□□ -0.28
SEC13-214ENST00000476597 BRI3BPQ8WY22 251 aa13.31□□□□□ -0.28
SEC13-214ENST00000476597 NOP58Q9Y2X3 529 aaKnown RBP13.31□□□□□ -0.28
SEC13-214ENST00000476597 GPR75-ASB3A0A0A6YYF3 556 aa13.3□□□□□ -0.28
SEC13-214ENST00000476597 CCL15-CCL14A0A0B4J2E2 113 aa13.3□□□□□ -0.28
SEC13-214ENST00000476597 ENTPD3O75355 529 aa13.3□□□□□ -0.28
SEC13-214ENST00000476597 UQCRFS1P1P0C7P4 283 aa13.3□□□□□ -0.28
SEC13-214ENST00000476597 RGS3P49796 1198 aa13.3□□□□□ -0.28
SEC13-214ENST00000476597 MECOMQ03112 1051 aa13.3□□□□□ -0.28
SEC13-214ENST00000476597 CRHR2Q13324 411 aa13.3□□□□□ -0.28
SEC13-214ENST00000476597 CCL15Q16663 113 aa13.3□□□□□ -0.28
SEC13-214ENST00000476597 TNNI3KQ59H18 835 aa13.3□□□□□ -0.28
SEC13-214ENST00000476597 PI16Q6UXB8 463 aa13.3□□□□□ -0.28
SEC13-214ENST00000476597 TBC1D9Q6ZT07 1266 aa13.3□□□□□ -0.28
SEC13-214ENST00000476597 ZNF384Q8TF68 577 aa13.3□□□□□ -0.28
SEC13-214ENST00000476597 OTUD5Q96G74 571 aa13.3□□□□□ -0.28
SEC13-214ENST00000476597 FPGT-TNNI3KV9GXZ4 949 aa13.3□□□□□ -0.28
SEC13-214ENST00000476597 AKAP11Q9UKA4 1901 aa13.3□□□□□ -0.28
SEC13-214ENST00000476597 IRF6O14896 467 aa13.29□□□□□ -0.28
SEC13-214ENST00000476597 WDHD1O75717 1129 aaPredicted RBP13.29□□□□□ -0.28
SEC13-214ENST00000476597 INPP5BP32019 993 aa13.29□□□□□ -0.28
SEC13-214ENST00000476597 MCAMP43121 646 aa13.29□□□□□ -0.28
SEC13-214ENST00000476597 PPATQ06203 517 aa13.29□□□□□ -0.28
SEC13-214ENST00000476597 OS9Q13438 667 aaPredicted RBP13.29□□□□□ -0.28
SEC13-214ENST00000476597 PANK1Q8TE04 598 aa13.29□□□□□ -0.28
SEC13-214ENST00000476597 NSUN4Q96CB9 384 aaKnown RBP13.29□□□□□ -0.28
SEC13-214ENST00000476597 HPS5Q9UPZ3 1129 aa13.29□□□□□ -0.28
SEC13-214ENST00000476597 MROH7-TTC4A0A0A0MT08 1334 aa13.29□□□□□ -0.28
SEC13-214ENST00000476597 LDHCP07864 332 aa13.28□□□□□ -0.28
SEC13-214ENST00000476597 CETPP11597 493 aa13.28□□□□□ -0.28
SEC13-214ENST00000476597 MS4A1P11836 297 aa13.28□□□□□ -0.28
SEC13-214ENST00000476597 BTDP43251 543 aa13.28□□□□□ -0.28
SEC13-214ENST00000476597 RHBDL3P58872 404 aa13.28□□□□□ -0.28
SEC13-214ENST00000476597 GSTO1P78417 241 aa13.28□□□□□ -0.28
SEC13-214ENST00000476597 MAP3K10Q02779 954 aa13.28□□□□□ -0.28
SEC13-214ENST00000476597 PPIL2Q13356 520 aa13.28□□□□□ -0.28
SEC13-214ENST00000476597 CCDC158Q5M9N0 1113 aa13.28□□□□□ -0.28
SEC13-214ENST00000476597 CEP85Q6P2H3 762 aa13.28□□□□□ -0.28
SEC13-214ENST00000476597 FBXO46Q6PJ61 603 aaPredicted RBP13.28□□□□□ -0.28
SEC13-214ENST00000476597 SH3BP5LQ7L8J4 393 aa13.28□□□□□ -0.28
SEC13-214ENST00000476597 FAM43AQ8N2R8 423 aa13.28□□□□□ -0.28
SEC13-214ENST00000476597 ZNF512BQ96KM6 892 aaPredicted RBP13.28□□□□□ -0.28
SEC13-214ENST00000476597 DBNDD2Q9BQY9 259 aa13.28□□□□□ -0.28
SEC13-214ENST00000476597 NPM3O75607 178 aaKnown RBP13.27□□□□□ -0.29
SEC13-214ENST00000476597 MAP4K4O95819 1239 aaPredicted RBP13.27□□□□□ -0.29
SEC13-214ENST00000476597 SP3Q02447 781 aa13.27□□□□□ -0.29
SEC13-214ENST00000476597 MLLT1Q03111 559 aaPredicted RBP13.27□□□□□ -0.29
SEC13-214ENST00000476597 SNAPC2Q13487 334 aa13.27□□□□□ -0.29
SEC13-214ENST00000476597 NOL9Q5SY16 702 aaKnown RBP13.27□□□□□ -0.29
SEC13-214ENST00000476597 ZFYVE28Q9HCC9 887 aa13.27□□□□□ -0.29
SEC13-214ENST00000476597 DDX4Q9NQI0 724 aaKnown RBP13.27□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 30.9 ms