RNA–Protein interactions for RNA: ENST00000476169.1

VPS13D-207, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 3

Gene VPS13D, Length 475 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-207ENST00000476169 TRIM55Q9BYV6 548 aa5.89□□□□□ -1.47
VPS13D-207ENST00000476169 JPH1Q9HDC5 661 aaPredicted RBP5.89□□□□□ -1.47
VPS13D-207ENST00000476169 GDF2Q9UK05 429 aaPredicted RBP5.89□□□□□ -1.47
VPS13D-207ENST00000476169 R3HCC1Q9Y3T6 440 aaKnown RBP5.89□□□□□ -1.47
VPS13D-207ENST00000476169 H3BM21 787 aa5.88□□□□□ -1.47
VPS13D-207ENST00000476169 LCE2BO14633 110 aa5.88□□□□□ -1.47
VPS13D-207ENST00000476169 U2SURPO15042 1029 aaKnown RBP5.88□□□□□ -1.47
VPS13D-207ENST00000476169 GSTP1P09211 210 aaKnown RBP5.88□□□□□ -1.47
VPS13D-207ENST00000476169 ARL4DP49703 201 aa5.88□□□□□ -1.47
VPS13D-207ENST00000476169 ZNF165P49910 485 aa5.88□□□□□ -1.47
VPS13D-207ENST00000476169 GSTM4Q03013 218 aa5.88□□□□□ -1.47
VPS13D-207ENST00000476169 ZNF252P-AS1Q0IIN9 211 aa5.88□□□□□ -1.47
VPS13D-207ENST00000476169 NFE2L2Q16236 605 aa5.88□□□□□ -1.47
VPS13D-207ENST00000476169 RNF187Q5TA31 235 aaPredicted RBP5.88□□□□□ -1.47
VPS13D-207ENST00000476169 FBXW10Q5XX13 1052 aa5.88□□□□□ -1.47
VPS13D-207ENST00000476169 FAM117BQ6P1L5 589 aa5.88□□□□□ -1.47
VPS13D-207ENST00000476169 REC114Q7Z4M0 266 aa5.88□□□□□ -1.47
VPS13D-207ENST00000476169 NPAS3Q8IXF0 933 aa5.88□□□□□ -1.47
VPS13D-207ENST00000476169 NLGN1Q8N2Q7 840 aa5.88□□□□□ -1.47
VPS13D-207ENST00000476169 HNRNPLLQ8WVV9 542 aaKnown RBP5.88□□□□□ -1.47
VPS13D-207ENST00000476169 KCNB2Q92953 911 aa5.88□□□□□ -1.47
VPS13D-207ENST00000476169 GPATCH3Q96I76 525 aa5.88□□□□□ -1.47
VPS13D-207ENST00000476169 CRBNQ96SW2 442 aa5.88□□□□□ -1.47
VPS13D-207ENST00000476169 COL25A1Q9BXS0 654 aaPredicted RBP5.88□□□□□ -1.47
VPS13D-207ENST00000476169 SOX17Q9H6I2 414 aaPredicted RBP5.88□□□□□ -1.47
VPS13D-207ENST00000476169 BRMS1Q9HCU9 246 aa5.88□□□□□ -1.47
VPS13D-207ENST00000476169 PRKAG3Q9UGI9 489 aa5.88□□□□□ -1.47
VPS13D-207ENST00000476169 STARD13Q9Y3M8 1113 aa5.88□□□□□ -1.47
VPS13D-207ENST00000476169 PPME1Q9Y570 386 aa5.88□□□□□ -1.47
VPS13D-207ENST00000476169 K7ELQ4 463 aaPredicted RBP5.87□□□□□ -1.47
VPS13D-207ENST00000476169 EIF4EBP3O60516 100 aaPredicted RBP5.87□□□□□ -1.47
VPS13D-207ENST00000476169 TRIM37O94972 964 aa5.87□□□□□ -1.47
VPS13D-207ENST00000476169 EPXP11678 715 aa5.87□□□□□ -1.47
VPS13D-207ENST00000476169 EIF6P56537 245 aaKnown RBP5.87□□□□□ -1.47
VPS13D-207ENST00000476169 PIP4K2BP78356 416 aa5.87□□□□□ -1.47
VPS13D-207ENST00000476169 C19orf57Q0VDD7 668 aa5.87□□□□□ -1.47
VPS13D-207ENST00000476169 SERINC3Q13530 473 aa5.87□□□□□ -1.47
VPS13D-207ENST00000476169 TCEAL1Q15170 157 aa5.87□□□□□ -1.47
VPS13D-207ENST00000476169 MAP1SQ66K74 1059 aaPredicted RBP5.87□□□□□ -1.47
VPS13D-207ENST00000476169 HGSNATQ68CP4 663 aa5.87□□□□□ -1.47
VPS13D-207ENST00000476169 SCARA3Q6AZY7 606 aa5.87□□□□□ -1.47
VPS13D-207ENST00000476169 TXNDC11Q6PKC3 985 aa5.87□□□□□ -1.47
VPS13D-207ENST00000476169 PDZD3Q86UT5 571 aa5.87□□□□□ -1.47
VPS13D-207ENST00000476169 JAZF1Q86VZ6 243 aa5.87□□□□□ -1.47
VPS13D-207ENST00000476169 SHDQ96IW2 340 aa5.87□□□□□ -1.47
VPS13D-207ENST00000476169 SIRPGQ9P1W8 387 aa5.87□□□□□ -1.47
VPS13D-207ENST00000476169 MRPL42Q9Y6G3 142 aaKnown RBP5.87□□□□□ -1.47
VPS13D-207ENST00000476169 LINC01387J3KSC0 135 aa5.86□□□□□ -1.47
VPS13D-207ENST00000476169 SMAD7O15105 426 aaKnown RBP5.86□□□□□ -1.47
VPS13D-207ENST00000476169 KLF4O43474 513 aa5.86□□□□□ -1.47
VPS13D-207ENST00000476169 ALBP02768 609 aa5.86□□□□□ -1.47
VPS13D-207ENST00000476169 CYP11A1P05108 521 aa5.86□□□□□ -1.47
VPS13D-207ENST00000476169 RPL6Q02878 288 aaKnown RBP5.86□□□□□ -1.47
VPS13D-207ENST00000476169 PTPN11Q06124 597 aaPredicted RBP5.86□□□□□ -1.47
VPS13D-207ENST00000476169 GRIK5Q16478 980 aa5.86□□□□□ -1.47
VPS13D-207ENST00000476169 TNNI3KQ59H18 835 aa5.86□□□□□ -1.47
VPS13D-207ENST00000476169 RNFT1Q5M7Z0 435 aa5.86□□□□□ -1.47
VPS13D-207ENST00000476169 ZNF746Q6NUN9 644 aaPredicted RBP5.86□□□□□ -1.47
VPS13D-207ENST00000476169 C20orf204Q6ZNR8 217 aa5.86□□□□□ -1.47
VPS13D-207ENST00000476169 GK5Q6ZS86 529 aa5.86□□□□□ -1.47
VPS13D-207ENST00000476169 WFDC8Q8IUA0 241 aa5.86□□□□□ -1.47
VPS13D-207ENST00000476169 REXO1Q8N1G1 1221 aaKnown RBP5.86□□□□□ -1.47
VPS13D-207ENST00000476169 WNT8BQ93098 351 aa5.86□□□□□ -1.47
VPS13D-207ENST00000476169 ACSBG1Q96GR2 724 aa5.86□□□□□ -1.47
VPS13D-207ENST00000476169 ZC3H12CQ9C0D7 883 aaKnown RBP5.86□□□□□ -1.47
VPS13D-207ENST00000476169 LILRB5O75023 590 aa5.85□□□□□ -1.47
VPS13D-207ENST00000476169 VSIG8P0DPA2 414 aa5.85□□□□□ -1.47
VPS13D-207ENST00000476169 IMPDH2P12268 514 aa5.85□□□□□ -1.47
VPS13D-207ENST00000476169 BAG6P46379 1132 aa5.85□□□□□ -1.47
VPS13D-207ENST00000476169 AFF1P51825 1210 aaKnown RBP5.85□□□□□ -1.47
VPS13D-207ENST00000476169 CLCQ05315 142 aa5.85□□□□□ -1.47
VPS13D-207ENST00000476169 RAB33AQ14088 237 aa5.85□□□□□ -1.47
VPS13D-207ENST00000476169 POU4F3Q15319 338 aa5.85□□□□□ -1.47
VPS13D-207ENST00000476169 KANK3Q6NY19 840 aa5.85□□□□□ -1.47
VPS13D-207ENST00000476169 MPRIPQ6WCQ1 1025 aa5.85□□□□□ -1.47
VPS13D-207ENST00000476169 OR6P1Q8NGX9 317 aa5.85□□□□□ -1.47
VPS13D-207ENST00000476169 ZCRB1Q8TBF4 217 aaKnown RBP5.85□□□□□ -1.47
VPS13D-207ENST00000476169 MKL1Q969V6 931 aa5.85□□□□□ -1.47
VPS13D-207ENST00000476169 CORO1BQ9BR76 489 aa5.85□□□□□ -1.47
VPS13D-207ENST00000476169 ZNRF3Q9ULT6 936 aa5.85□□□□□ -1.47
VPS13D-207ENST00000476169 M0R082 166 aa5.84□□□□□ -1.47
VPS13D-207ENST00000476169 FSCN2O14926 492 aa5.84□□□□□ -1.47
VPS13D-207ENST00000476169 GRIN3BO60391 1043 aa5.84□□□□□ -1.47
VPS13D-207ENST00000476169 HSD3B2P26439 372 aa5.84□□□□□ -1.47
VPS13D-207ENST00000476169 GIPRP48546 466 aa5.84□□□□□ -1.47
VPS13D-207ENST00000476169 SRSF11Q05519 484 aaKnown RBP5.84□□□□□ -1.47
VPS13D-207ENST00000476169 PDZRN4Q6ZMN7 1036 aaPredicted RBP5.84□□□□□ -1.47
VPS13D-207ENST00000476169 CERS3Q8IU89 383 aa5.84□□□□□ -1.47
VPS13D-207ENST00000476169 FAM169BQ8N8A8 192 aa5.84□□□□□ -1.47
VPS13D-207ENST00000476169 ZNF417Q8TAU3 575 aa5.84□□□□□ -1.47
VPS13D-207ENST00000476169 GPBAR1Q8TDU6 330 aa5.84□□□□□ -1.47
VPS13D-207ENST00000476169 ACDQ96AP0 544 aa5.84□□□□□ -1.47
VPS13D-207ENST00000476169 SRPK1Q96SB4 655 aaKnown RBP5.84□□□□□ -1.47
VPS13D-207ENST00000476169 ZNF587Q96SQ5 575 aaPredicted RBP5.84□□□□□ -1.47
VPS13D-207ENST00000476169 CARD10Q9BWT7 1032 aa5.84□□□□□ -1.47
VPS13D-207ENST00000476169 METTL14Q9HCE5 456 aaKnown RBP5.84□□□□□ -1.47
VPS13D-207ENST00000476169 OSGEPQ9NPF4 335 aa5.84□□□□□ -1.47
VPS13D-207ENST00000476169 KLHL42Q9P2K6 505 aa5.84□□□□□ -1.47
VPS13D-207ENST00000476169 PCDHA4Q9UN74 947 aa5.84□□□□□ -1.47
VPS13D-207ENST00000476169 PCDHB14Q9Y5E9 798 aa5.84□□□□□ -1.47
Retrieved 100 of 20,778 RNA–protein pairs in 41 ms