RNA–Protein interactions for RNA: ENST00000475558.5

SHQ1-207, Transcript of SHQ1, H/ACA ribonucleoprotein assembly factor, humanhuman

TSL 5

Gene SHQ1, Length 666 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHQ1-207ENST00000475558 GREM2Q9H772 168 aa8.52□□□□□ -1.05
SHQ1-207ENST00000475558 GNL3LQ9NVN8 582 aaKnown RBP8.52□□□□□ -1.05
SHQ1-207ENST00000475558 NSFL1CQ9UNZ2 370 aaKnown RBP8.52□□□□□ -1.05
SHQ1-207ENST00000475558 PA2G4Q9UQ80 394 aaKnown RBP8.52□□□□□ -1.05
SHQ1-207ENST00000475558 FPGT-TNNI3KV9GXZ4 949 aa8.52□□□□□ -1.05
SHQ1-207ENST00000475558 LAMB2P55268 1798 aa8.52□□□□□ -1.05
SHQ1-207ENST00000475558 ADM5C9JUS6 153 aa8.51□□□□□ -1.05
SHQ1-207ENST00000475558 CDC45O75419 566 aa8.51□□□□□ -1.05
SHQ1-207ENST00000475558 SLC10A3P09131 477 aa8.51□□□□□ -1.05
SHQ1-207ENST00000475558 TFCP2Q12800 502 aa8.51□□□□□ -1.05
SHQ1-207ENST00000475558 PKN2Q16513 984 aaKnown RBP8.51□□□□□ -1.05
SHQ1-207ENST00000475558 VARS2Q5ST30 1063 aaKnown RBP8.51□□□□□ -1.05
SHQ1-207ENST00000475558 PRPF38BQ5VTL8 546 aaKnown RBP8.51□□□□□ -1.05
SHQ1-207ENST00000475558 EAF2Q96CJ1 260 aaPredicted RBP8.51□□□□□ -1.05
SHQ1-207ENST00000475558 NEUROD6Q96NK8 337 aa8.51□□□□□ -1.05
SHQ1-207ENST00000475558 DBNDD1Q9H9R9 158 aa8.51□□□□□ -1.05
SHQ1-207ENST00000475558 IL1RAPL2Q9NP60 686 aa8.51□□□□□ -1.05
SHQ1-207ENST00000475558 SMARCA5O60264 1052 aaPredicted RBP8.5□□□□□ -1.05
SHQ1-207ENST00000475558 ECE2O60344 883 aa8.5□□□□□ -1.05
SHQ1-207ENST00000475558 EGFRP00533 1210 aa8.5□□□□□ -1.05
SHQ1-207ENST00000475558 VIL1P09327 827 aaKnown RBP8.5□□□□□ -1.05
SHQ1-207ENST00000475558 SLC5A1P13866 664 aa8.5□□□□□ -1.05
SHQ1-207ENST00000475558 TAF1P21675 1872 aa8.5□□□□□ -1.05
SHQ1-207ENST00000475558 FKBP1BP68106 108 aa8.5□□□□□ -1.05
SHQ1-207ENST00000475558 TTF1Q15361 905 aaPredicted RBP8.5□□□□□ -1.05
SHQ1-207ENST00000475558 PUM3Q15397 648 aaKnown RBP8.5□□□□□ -1.05
SHQ1-207ENST00000475558 KIF4BQ2VIQ3 1234 aa8.5□□□□□ -1.05
SHQ1-207ENST00000475558 CAVIN4Q5BKX8 364 aa8.5□□□□□ -1.05
SHQ1-207ENST00000475558 ZC3H12CQ9C0D7 883 aaKnown RBP8.5□□□□□ -1.05
SHQ1-207ENST00000475558 POLLQ9UGP5 575 aa8.5□□□□□ -1.05
SHQ1-207ENST00000475558 LEMD3Q9Y2U8 911 aa8.5□□□□□ -1.05
SHQ1-207ENST00000475558 SALL3Q9BXA9 1300 aa8.5□□□□□ -1.05
SHQ1-207ENST00000475558 DUOX1Q9NRD9 1551 aa8.49□□□□□ -1.05
SHQ1-207ENST00000475558 A0A1B0GUL7 405 aa8.49□□□□□ -1.05
SHQ1-207ENST00000475558 TRIM6-TRIM34B2RNG4 842 aa8.49□□□□□ -1.05
SHQ1-207ENST00000475558 REC8O95072 547 aa8.49□□□□□ -1.05
SHQ1-207ENST00000475558 GPSM2P81274 684 aa8.49□□□□□ -1.05
SHQ1-207ENST00000475558 ATP2B3Q16720 1220 aa8.49□□□□□ -1.05
SHQ1-207ENST00000475558 ZSCAN25Q6NSZ9 544 aa8.49□□□□□ -1.05
SHQ1-207ENST00000475558 TBC1D16Q8TBP0 767 aa8.49□□□□□ -1.05
SHQ1-207ENST00000475558 CELF1Q92879 486 aaKnown RBP8.49□□□□□ -1.05
SHQ1-207ENST00000475558 RNF166Q96A37 237 aaPredicted RBP8.49□□□□□ -1.05
SHQ1-207ENST00000475558 CDCA5Q96FF9 252 aa8.49□□□□□ -1.05
SHQ1-207ENST00000475558 CCDC8Q9H0W5 538 aaPredicted RBP8.49□□□□□ -1.05
SHQ1-207ENST00000475558 KCNQ5Q9NR82 932 aa8.49□□□□□ -1.05
SHQ1-207ENST00000475558 GGA3Q9NZ52 723 aa8.49□□□□□ -1.05
SHQ1-207ENST00000475558 HDAC9Q9UKV0 1011 aa8.49□□□□□ -1.05
SHQ1-207ENST00000475558 LRRC37AA6NMS7 1700 aa8.49□□□□□ -1.05
SHQ1-207ENST00000475558 SEMA3EO15041 775 aa8.48□□□□□ -1.05
SHQ1-207ENST00000475558 SDSP20132 328 aa8.48□□□□□ -1.05
SHQ1-207ENST00000475558 MFAP1P55081 439 aaKnown RBP8.48□□□□□ -1.05
SHQ1-207ENST00000475558 TIMM10P62072 90 aa8.48□□□□□ -1.05
SHQ1-207ENST00000475558 LRRC24Q50LG9 513 aa8.48□□□□□ -1.05
SHQ1-207ENST00000475558 TTC39AQ5SRH9 613 aa8.48□□□□□ -1.05
SHQ1-207ENST00000475558 KIAA1211Q6ZU35 1233 aa8.48□□□□□ -1.05
SHQ1-207ENST00000475558 RASAL3Q86YV0 1011 aa8.48□□□□□ -1.05
SHQ1-207ENST00000475558 AGBL3Q8NEM8 1001 aa8.48□□□□□ -1.05
SHQ1-207ENST00000475558 KLHDC4Q8TBB5 520 aa8.48□□□□□ -1.05
SHQ1-207ENST00000475558 ZNF594Q96JF6 807 aaPredicted RBP8.48□□□□□ -1.05
SHQ1-207ENST00000475558 PODXL2Q9NZ53 605 aa8.48□□□□□ -1.05
SHQ1-207ENST00000475558 MINPP1Q9UNW1 487 aa8.48□□□□□ -1.05
SHQ1-207ENST00000475558 HPS5Q9UPZ3 1129 aa8.48□□□□□ -1.05
SHQ1-207ENST00000475558 DDX60Q8IY21 1712 aaKnown RBP8.47□□□□□ -1.05
SHQ1-207ENST00000475558 ZFYP08048 801 aaPredicted RBP8.47□□□□□ -1.05
SHQ1-207ENST00000475558 ATP2B4P23634 1241 aa8.47□□□□□ -1.05
SHQ1-207ENST00000475558 KCNJ4P48050 445 aa8.47□□□□□ -1.05
SHQ1-207ENST00000475558 ZNF280AP59817 542 aaPredicted RBP8.47□□□□□ -1.05
SHQ1-207ENST00000475558 CHRNDQ07001 517 aa8.47□□□□□ -1.05
SHQ1-207ENST00000475558 SCARF1Q14162 830 aa8.47□□□□□ -1.05
SHQ1-207ENST00000475558 C8orf34Q49A92 452 aa8.47□□□□□ -1.05
SHQ1-207ENST00000475558 ANGEL2Q5VTE6 544 aaKnown RBP8.47□□□□□ -1.05
SHQ1-207ENST00000475558 RSBN1LQ6PCB5 846 aaPredicted RBP8.47□□□□□ -1.05
SHQ1-207ENST00000475558 C15orf52Q6ZUT6 534 aaKnown RBP8.47□□□□□ -1.05
SHQ1-207ENST00000475558 VPS37DQ86XT2 251 aa8.47□□□□□ -1.05
SHQ1-207ENST00000475558 PI4K2BQ8TCG2 481 aa8.47□□□□□ -1.05
SHQ1-207ENST00000475558 RILPL2Q969X0 211 aa8.47□□□□□ -1.05
SHQ1-207ENST00000475558 XAGE2Q96GT9 111 aa8.47□□□□□ -1.05
SHQ1-207ENST00000475558 CCDC85AQ96PX6 553 aaPredicted RBP8.47□□□□□ -1.05
SHQ1-207ENST00000475558 HAUS7Q99871 368 aa8.47□□□□□ -1.05
SHQ1-207ENST00000475558 PUS3Q9BZE2 481 aaKnown RBP8.47□□□□□ -1.05
SHQ1-207ENST00000475558 DDX24Q9GZR7 859 aaKnown RBP eCLIP8.47□□□□□ -1.05
SHQ1-207ENST00000475558 ZSWIM6Q9HCJ5 1215 aa8.47□□□□□ -1.05
SHQ1-207ENST00000475558 SEC31BQ9NQW1 1179 aa8.47□□□□□ -1.05
SHQ1-207ENST00000475558 PITPNM2Q9BZ72 1349 aa8.47□□□□□ -1.05
SHQ1-207ENST00000475558 USP17L8P0C7I0 530 aa8.46□□□□□ -1.06
SHQ1-207ENST00000475558 FGFR2P21802 821 aa8.46□□□□□ -1.06
SHQ1-207ENST00000475558 MCCP23508 829 aa8.46□□□□□ -1.06
SHQ1-207ENST00000475558 NOM1Q5C9Z4 860 aaKnown RBP8.46□□□□□ -1.06
SHQ1-207ENST00000475558 VGLL2Q8N8G2 317 aa8.46□□□□□ -1.06
SHQ1-207ENST00000475558 ZNF296Q8WUU4 475 aaPredicted RBP8.46□□□□□ -1.06
SHQ1-207ENST00000475558 ANKIB1Q9P2G1 1089 aa8.46□□□□□ -1.06
SHQ1-207ENST00000475558 DBNLQ9UJU6 430 aaKnown RBP8.46□□□□□ -1.06
SHQ1-207ENST00000475558 GGA1Q9UJY5 639 aa8.46□□□□□ -1.06
SHQ1-207ENST00000475558 ASTN2O75129 1339 aaPredicted RBP8.46□□□□□ -1.06
SHQ1-207ENST00000475558 ZNF609O15014 1411 aa8.46□□□□□ -1.06
SHQ1-207ENST00000475558 SCN9AQ15858 1988 aa8.45□□□□□ -1.06
SHQ1-207ENST00000475558 RIOK3O14730 519 aaKnown RBP8.45□□□□□ -1.06
SHQ1-207ENST00000475558 UFL1O94874 794 aa8.45□□□□□ -1.06
SHQ1-207ENST00000475558 TBC1D8O95759 1140 aa8.45□□□□□ -1.06
SHQ1-207ENST00000475558 ANP32AP39687 249 aaKnown RBP8.45□□□□□ -1.06
Retrieved 100 of 20,778 RNA–protein pairs in 15 ms