RNA–Protein interactions for RNA: ENST00000474665.1

LIMD1-204, Transcript of LIM domains containing 1, humanhuman

TSL 3

Gene LIMD1, Length 513 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMD1-204ENST00000474665 SPATA5Q8NB90 893 aa8.56□□□□□ -1.04
LIMD1-204ENST00000474665 AGBL3Q8NEM8 1001 aa8.56□□□□□ -1.04
LIMD1-204ENST00000474665 DPF2Q92785 391 aa8.56□□□□□ -1.04
LIMD1-204ENST00000474665 EDC3Q96F86 508 aaKnown RBP8.56□□□□□ -1.04
LIMD1-204ENST00000474665 ZBED3Q96IU2 234 aaPredicted RBP8.56□□□□□ -1.04
LIMD1-204ENST00000474665 LNPKQ9C0E8 428 aa8.56□□□□□ -1.04
LIMD1-204ENST00000474665 PCDHAC2Q9Y5I4 1007 aa8.56□□□□□ -1.04
LIMD1-204ENST00000474665 MYH2Q9UKX2 1941 aa8.56□□□□□ -1.04
LIMD1-204ENST00000474665 KIAA0100Q14667 2235 aaKnown RBP8.56□□□□□ -1.04
LIMD1-204ENST00000474665 SALL1Q9NSC2 1324 aa8.55□□□□□ -1.04
LIMD1-204ENST00000474665 DOCK2Q92608 1830 aa8.55□□□□□ -1.04
LIMD1-204ENST00000474665 SEMA3EO15041 775 aa8.55□□□□□ -1.04
LIMD1-204ENST00000474665 NEFLP07196 543 aa8.55□□□□□ -1.04
LIMD1-204ENST00000474665 IFIT2P09913 472 aaKnown RBP8.55□□□□□ -1.04
LIMD1-204ENST00000474665 ATP5JP18859 108 aa8.55□□□□□ -1.04
LIMD1-204ENST00000474665 RPS12P25398 132 aaKnown RBP8.55□□□□□ -1.04
LIMD1-204ENST00000474665 PRDX5P30044 214 aa8.55□□□□□ -1.04
LIMD1-204ENST00000474665 ZAP70P43403 619 aa8.55□□□□□ -1.04
LIMD1-204ENST00000474665 NOM1Q5C9Z4 860 aaKnown RBP8.55□□□□□ -1.04
LIMD1-204ENST00000474665 GORABQ5T7V8 394 aa8.55□□□□□ -1.04
LIMD1-204ENST00000474665 ERICH6BQ5W0A0 696 aa8.55□□□□□ -1.04
LIMD1-204ENST00000474665 CHD1LQ86WJ1 897 aa8.55□□□□□ -1.04
LIMD1-204ENST00000474665 KIAA0825Q8IV33 1275 aa8.55□□□□□ -1.04
LIMD1-204ENST00000474665 PLEKHM2Q8IWE5 1019 aa8.55□□□□□ -1.04
LIMD1-204ENST00000474665 MICALL2Q8IY33 904 aa8.55□□□□□ -1.04
LIMD1-204ENST00000474665 PI4K2BQ8TCG2 481 aa8.55□□□□□ -1.04
LIMD1-204ENST00000474665 FBXW7Q969H0 707 aa8.55□□□□□ -1.04
LIMD1-204ENST00000474665 TMEM106CQ9BVX2 250 aa8.55□□□□□ -1.04
LIMD1-204ENST00000474665 PRO3102Q9H379 93 aa8.55□□□□□ -1.04
LIMD1-204ENST00000474665 ANTXR1Q9H6X2 564 aa8.55□□□□□ -1.04
LIMD1-204ENST00000474665 PIH1D3Q9NQM4 214 aaKnown RBP8.55□□□□□ -1.04
LIMD1-204ENST00000474665 GNL3LQ9NVN8 582 aaKnown RBP8.55□□□□□ -1.04
LIMD1-204ENST00000474665 STAP2Q9UGK3 403 aa8.55□□□□□ -1.04
LIMD1-204ENST00000474665 DENND2AQ9ULE3 1009 aa8.55□□□□□ -1.04
LIMD1-204ENST00000474665 ASTN2O75129 1339 aaPredicted RBP8.54□□□□□ -1.04
LIMD1-204ENST00000474665 H7C1D1 291 aa8.54□□□□□ -1.04
LIMD1-204ENST00000474665 CHGBP05060 677 aa8.54□□□□□ -1.04
LIMD1-204ENST00000474665 USP17L8P0C7I0 530 aa8.54□□□□□ -1.04
LIMD1-204ENST00000474665 UQCRFS1P1P0C7P4 283 aa8.54□□□□□ -1.04
LIMD1-204ENST00000474665 TM4SF4P48230 202 aa8.54□□□□□ -1.04
LIMD1-204ENST00000474665 PDE1AP54750 535 aa8.54□□□□□ -1.04
LIMD1-204ENST00000474665 MKRN3Q13064 507 aaKnown RBP8.54□□□□□ -1.04
LIMD1-204ENST00000474665 TBC1D10BQ4KMP7 808 aaPredicted RBP8.54□□□□□ -1.04
LIMD1-204ENST00000474665 CCDC158Q5M9N0 1113 aa8.54□□□□□ -1.04
LIMD1-204ENST00000474665 TTC39AQ5SRH9 613 aa8.54□□□□□ -1.04
LIMD1-204ENST00000474665 RBM26Q5T8P6 1007 aaKnown RBP8.54□□□□□ -1.04
LIMD1-204ENST00000474665 Q7L0L9 218 aa8.54□□□□□ -1.04
LIMD1-204ENST00000474665 PHF6Q8IWS0 365 aaKnown RBP eCLIP8.54□□□□□ -1.04
LIMD1-204ENST00000474665 WDR66Q8TBY9 1149 aa8.54□□□□□ -1.04
LIMD1-204ENST00000474665 PPIL4Q8WUA2 492 aaKnown RBP eCLIP8.54□□□□□ -1.04
LIMD1-204ENST00000474665 DPF3Q92784 378 aa8.54□□□□□ -1.04
LIMD1-204ENST00000474665 ARMC5Q96C12 935 aa8.54□□□□□ -1.04
LIMD1-204ENST00000474665 DCPSQ96C86 337 aaKnown RBP8.54□□□□□ -1.04
LIMD1-204ENST00000474665 ECHDC1Q9NTX5 307 aa8.54□□□□□ -1.04
LIMD1-204ENST00000474665 PTPN22Q9Y2R2 807 aa8.54□□□□□ -1.04
LIMD1-204ENST00000474665 MYH7P12883 1935 aa8.54□□□□□ -1.04
LIMD1-204ENST00000474665 RBBP6Q7Z6E9 1792 aaKnown RBP8.53□□□□□ -1.04
LIMD1-204ENST00000474665 F8W031 263 aaPredicted RBP8.53□□□□□ -1.04
LIMD1-204ENST00000474665 FRAT2O75474 233 aaPredicted RBP8.53□□□□□ -1.04
LIMD1-204ENST00000474665 MYCP01106 439 aaPredicted RBP8.53□□□□□ -1.04
LIMD1-204ENST00000474665 MX1P20591 662 aa8.53□□□□□ -1.04
LIMD1-204ENST00000474665 DIXDC1Q155Q3 683 aa8.53□□□□□ -1.04
LIMD1-204ENST00000474665 MOB2Q70IA6 237 aa8.53□□□□□ -1.04
LIMD1-204ENST00000474665 DEFB123Q8N688 67 aa8.53□□□□□ -1.04
LIMD1-204ENST00000474665 TBC1D22AQ8WUA7 517 aa8.53□□□□□ -1.04
LIMD1-204ENST00000474665 HAUS7Q99871 368 aa8.53□□□□□ -1.04
LIMD1-204ENST00000474665 BOLA2Q9H3K6 86 aa8.53□□□□□ -1.04
LIMD1-204ENST00000474665 PPP4R2Q9NY27 417 aa8.53□□□□□ -1.04
LIMD1-204ENST00000474665 TTF2Q9UNY4 1162 aaKnown RBP8.53□□□□□ -1.04
LIMD1-204ENST00000474665 STXBP5LQ9Y2K9 1186 aa8.53□□□□□ -1.04
LIMD1-204ENST00000474665 MYO3BQ8WXR4 1341 aa8.53□□□□□ -1.04
LIMD1-204ENST00000474665 NBPF9Q3BBW0 867 aa8.52□□□□□ -1.05
LIMD1-204ENST00000474665 SLFNL1Q499Z3 407 aa8.52□□□□□ -1.05
LIMD1-204ENST00000474665 APOBEC3HQ6NTF7 200 aaKnown RBP8.52□□□□□ -1.05
LIMD1-204ENST00000474665 CENPQQ7L2Z9 268 aaPredicted RBP8.52□□□□□ -1.05
LIMD1-204ENST00000474665 ADGRA1Q86SQ6 560 aa8.52□□□□□ -1.05
LIMD1-204ENST00000474665 NSUN4Q96CB9 384 aaKnown RBP8.52□□□□□ -1.05
LIMD1-204ENST00000474665 CDCA5Q96FF9 252 aa8.52□□□□□ -1.05
LIMD1-204ENST00000474665 CCDC136Q96JN2 1154 aa8.52□□□□□ -1.05
LIMD1-204ENST00000474665 PRMT6Q96LA8 375 aaPredicted RBP8.52□□□□□ -1.05
LIMD1-204ENST00000474665 OSBPL3Q9H4L5 887 aa8.52□□□□□ -1.05
LIMD1-204ENST00000474665 MYOZ2Q9NPC6 264 aa8.52□□□□□ -1.05
LIMD1-204ENST00000474665 SUGT1Q9Y2Z0 365 aa8.52□□□□□ -1.05
LIMD1-204ENST00000474665 ECM29Q5VYK3 1845 aa8.52□□□□□ -1.05
LIMD1-204ENST00000474665 TTC41PQ6P2S7 1318 aa8.52□□□□□ -1.05
LIMD1-204ENST00000474665 RANBP2P49792 3224 aaKnown RBP8.52□□□□□ -1.05
LIMD1-204ENST00000474665 BRCA2P51587 3418 aa8.51□□□□□ -1.05
LIMD1-204ENST00000474665 CDK5RAP2Q96SN8 1893 aa8.51□□□□□ -1.05
LIMD1-204ENST00000474665 SPDYE2BA6NHP3 402 aa8.51□□□□□ -1.05
LIMD1-204ENST00000474665 UBE2Q2LH0YL09 131 aa8.51□□□□□ -1.05
LIMD1-204ENST00000474665 GOLIM4O00461 696 aa8.51□□□□□ -1.05
LIMD1-204ENST00000474665 WNT10BO00744 389 aa8.51□□□□□ -1.05
LIMD1-204ENST00000474665 MAP4K4O95819 1239 aaPredicted RBP8.51□□□□□ -1.05
LIMD1-204ENST00000474665 LDHBP07195 334 aaKnown RBP8.51□□□□□ -1.05
LIMD1-204ENST00000474665 SPDYE6P0CI01 402 aa8.51□□□□□ -1.05
LIMD1-204ENST00000474665 CRKP46108 304 aa8.51□□□□□ -1.05
LIMD1-204ENST00000474665 HDLBPQ00341 1268 aaKnown RBP8.51□□□□□ -1.05
LIMD1-204ENST00000474665 MECOMQ03112 1051 aa8.51□□□□□ -1.05
LIMD1-204ENST00000474665 SLC4A8Q2Y0W8 1093 aa8.51□□□□□ -1.05
LIMD1-204ENST00000474665 MTMR14Q8NCE2 650 aa8.51□□□□□ -1.05
Retrieved 100 of 20,778 RNA–protein pairs in 18.4 ms