RNA–Protein interactions for RNA: ENST00000474059.1

CCDC88A-212, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 5

Gene CCDC88A, Length 541 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-212ENST00000474059 LGR6Q9HBX8 967 aa7.47□□□□□ -1.21
CCDC88A-212ENST00000474059 ABCB6Q9NP58 842 aa7.47□□□□□ -1.21
CCDC88A-212ENST00000474059 ADAMTS6Q9UKP5 1117 aa7.47□□□□□ -1.21
CCDC88A-212ENST00000474059 DAGLAQ9Y4D2 1042 aa7.47□□□□□ -1.21
CCDC88A-212ENST00000474059 PCDHGC5Q9Y5F6 944 aa7.47□□□□□ -1.21
CCDC88A-212ENST00000474059 SYNGAP1Q96PV0 1343 aa7.47□□□□□ -1.21
CCDC88A-212ENST00000474059 EIF4EBP3O60516 100 aaPredicted RBP7.46□□□□□ -1.22
CCDC88A-212ENST00000474059 FAAP100Q0VG06 881 aa7.46□□□□□ -1.22
CCDC88A-212ENST00000474059 ORC1Q13415 861 aa7.46□□□□□ -1.22
CCDC88A-212ENST00000474059 SLC5A6Q9Y289 635 aa7.46□□□□□ -1.22
CCDC88A-212ENST00000474059 ZNF862O60290 1169 aa7.45□□□□□ -1.22
CCDC88A-212ENST00000474059 ABL1P00519 1130 aa7.45□□□□□ -1.22
CCDC88A-212ENST00000474059 CD96P40200 585 aa7.45□□□□□ -1.22
CCDC88A-212ENST00000474059 ZNF648Q5T619 568 aaPredicted RBP7.45□□□□□ -1.22
CCDC88A-212ENST00000474059 PLD6Q8N2A8 252 aaKnown RBP7.45□□□□□ -1.22
CCDC88A-212ENST00000474059 CORO1BQ9BR76 489 aa7.45□□□□□ -1.22
CCDC88A-212ENST00000474059 CCDC86Q9H6F5 360 aaKnown RBP7.45□□□□□ -1.22
CCDC88A-212ENST00000474059 NPHS2Q9NP85 383 aa7.45□□□□□ -1.22
CCDC88A-212ENST00000474059 CDK5R2Q13319 367 aa7.44□□□□□ -1.22
CCDC88A-212ENST00000474059 PLCL1Q15111 1095 aa7.44□□□□□ -1.22
CCDC88A-212ENST00000474059 CCDC82Q8N4S0 544 aa7.44□□□□□ -1.22
CCDC88A-212ENST00000474059 FAM181AQ8N9Y4 354 aa7.44□□□□□ -1.22
CCDC88A-212ENST00000474059 GLIS3Q8NEA6 775 aa7.44□□□□□ -1.22
CCDC88A-212ENST00000474059 C1orf115Q9H7X2 142 aa7.44□□□□□ -1.22
CCDC88A-212ENST00000474059 RAD18Q9NS91 495 aa7.44□□□□□ -1.22
CCDC88A-212ENST00000474059 MBNL3Q9NUK0 354 aaKnown RBP7.44□□□□□ -1.22
CCDC88A-212ENST00000474059 CRIM1Q9NZV1 1036 aa7.44□□□□□ -1.22
CCDC88A-212ENST00000474059 ICMTO60725 284 aa7.43□□□□□ -1.22
CCDC88A-212ENST00000474059 CD8BP10966 210 aa7.43□□□□□ -1.22
CCDC88A-212ENST00000474059 LIG1P18858 919 aa7.43□□□□□ -1.22
CCDC88A-212ENST00000474059 ARHGAP4P98171 946 aa7.43□□□□□ -1.22
CCDC88A-212ENST00000474059 HP1BP3Q5SSJ5 553 aaPredicted RBP7.43□□□□□ -1.22
CCDC88A-212ENST00000474059 PRPF40BQ6NWY9 871 aaKnown RBP7.43□□□□□ -1.22
CCDC88A-212ENST00000474059 FAM129BQ96TA1 746 aa7.43□□□□□ -1.22
CCDC88A-212ENST00000474059 LEFTY1O75610 366 aa7.42□□□□□ -1.22
CCDC88A-212ENST00000474059 RNASE1P07998 156 aaKnown RBP7.42□□□□□ -1.22
CCDC88A-212ENST00000474059 FAM87AP0C7U9 286 aa7.42□□□□□ -1.22
CCDC88A-212ENST00000474059 FUT4P22083 530 aa7.42□□□□□ -1.22
CCDC88A-212ENST00000474059 PTPN12Q05209 780 aaKnown RBP7.42□□□□□ -1.22
CCDC88A-212ENST00000474059 FANCD2OSQ96PS1 177 aa7.42□□□□□ -1.22
CCDC88A-212ENST00000474059 DISC1Q9NRI5 854 aa7.42□□□□□ -1.22
CCDC88A-212ENST00000474059 SERPINB4P48594 390 aa7.41□□□□□ -1.22
CCDC88A-212ENST00000474059 PDE3AQ14432 1141 aa7.41□□□□□ -1.22
CCDC88A-212ENST00000474059 KIF4BQ2VIQ3 1234 aa7.41□□□□□ -1.22
CCDC88A-212ENST00000474059 EGFL7Q9UHF1 273 aa7.41□□□□□ -1.22
CCDC88A-212ENST00000474059 PLAGL2Q9UPG8 496 aa7.41□□□□□ -1.22
CCDC88A-212ENST00000474059 GPR182O15218 404 aa7.4□□□□□ -1.22
CCDC88A-212ENST00000474059 PPP1R15AO75807 674 aaPredicted RBP7.4□□□□□ -1.22
CCDC88A-212ENST00000474059 NEFMP07197 916 aa7.4□□□□□ -1.22
CCDC88A-212ENST00000474059 AP3B2Q13367 1082 aa7.4□□□□□ -1.22
CCDC88A-212ENST00000474059 ZNF124Q15973 351 aa7.4□□□□□ -1.22
CCDC88A-212ENST00000474059 SPOCD1Q6ZMY3 1216 aa7.4□□□□□ -1.22
CCDC88A-212ENST00000474059 PDZD3Q86UT5 571 aa7.4□□□□□ -1.22
CCDC88A-212ENST00000474059 STK11IPQ8N1F8 1099 aa7.4□□□□□ -1.22
CCDC88A-212ENST00000474059 NETO1Q8TDF5 533 aa7.4□□□□□ -1.22
CCDC88A-212ENST00000474059 ZC3H12CQ9C0D7 883 aaKnown RBP7.4□□□□□ -1.22
CCDC88A-212ENST00000474059 EHD4Q9H223 541 aa7.4□□□□□ -1.22
CCDC88A-212ENST00000474059 ZNF157P51786 506 aaPredicted RBP7.39□□□□□ -1.23
CCDC88A-212ENST00000474059 OXCT1P55809 520 aa7.39□□□□□ -1.23
CCDC88A-212ENST00000474059 LRRN4CLQ8ND94 238 aa7.39□□□□□ -1.23
CCDC88A-212ENST00000474059 STK35Q8TDR2 534 aa7.39□□□□□ -1.23
CCDC88A-212ENST00000474059 ZFYVE1Q9HBF4 777 aa7.39□□□□□ -1.23
CCDC88A-212ENST00000474059 TMEM238LA0A1B0GVL6 79 aa7.38□□□□□ -1.23
CCDC88A-212ENST00000474059 H3BRB1 525 aa7.38□□□□□ -1.23
CCDC88A-212ENST00000474059 CPNE3O75131 537 aaKnown RBP7.38□□□□□ -1.23
CCDC88A-212ENST00000474059 ID3Q02535 119 aa7.38□□□□□ -1.23
CCDC88A-212ENST00000474059 CYP27C1Q4G0S4 372 aa7.38□□□□□ -1.23
CCDC88A-212ENST00000474059 RPS26P11Q5JNZ5 115 aaPredicted RBP7.38□□□□□ -1.23
CCDC88A-212ENST00000474059 ATG4DQ86TL0 474 aaPredicted RBP7.38□□□□□ -1.23
CCDC88A-212ENST00000474059 CCDC74AQ96AQ1 378 aa7.38□□□□□ -1.23
CCDC88A-212ENST00000474059 MISP3Q96FF7 219 aa7.38□□□□□ -1.23
CCDC88A-212ENST00000474059 TUT1Q9H6E5 874 aaKnown RBP7.38□□□□□ -1.23
CCDC88A-212ENST00000474059 KRTAP9-7A8MTY7 169 aa7.37□□□□□ -1.23
CCDC88A-212ENST00000474059 GRM2Q14416 872 aa7.37□□□□□ -1.23
CCDC88A-212ENST00000474059 TTLL4Q14679 1199 aa7.37□□□□□ -1.23
CCDC88A-212ENST00000474059 FAM214BQ7L5A3 538 aa7.37□□□□□ -1.23
CCDC88A-212ENST00000474059 CILP2Q8IUL8 1156 aa7.37□□□□□ -1.23
CCDC88A-212ENST00000474059 DUSP23Q9BVJ7 150 aa7.37□□□□□ -1.23
CCDC88A-212ENST00000474059 RC3H2Q9HBD1 1191 aaKnown RBP7.37□□□□□ -1.23
CCDC88A-212ENST00000474059 BRPF3Q9ULD4 1205 aa7.37□□□□□ -1.23
CCDC88A-212ENST00000474059 MTMR7Q9Y216 660 aa7.37□□□□□ -1.23
CCDC88A-212ENST00000474059 EIF1AYO14602 144 aaKnown RBP7.36□□□□□ -1.23
CCDC88A-212ENST00000474059 GSTP1P09211 210 aaKnown RBP7.36□□□□□ -1.23
CCDC88A-212ENST00000474059 PRKCQQ04759 706 aa7.36□□□□□ -1.23
CCDC88A-212ENST00000474059 SMYD4Q8IYR2 804 aaPredicted RBP7.36□□□□□ -1.23
CCDC88A-212ENST00000474059 DDX54Q8TDD1 881 aaKnown RBP7.36□□□□□ -1.23
CCDC88A-212ENST00000474059 FAM168AQ92567 244 aa7.36□□□□□ -1.23
CCDC88A-212ENST00000474059 ATXN3LQ9H3M9 355 aa7.36□□□□□ -1.23
CCDC88A-212ENST00000474059 VAV3Q9UKW4 847 aa7.36□□□□□ -1.23
CCDC88A-212ENST00000474059 MESP2Q0VG99 397 aa7.35□□□□□ -1.23
CCDC88A-212ENST00000474059 HEXIM2Q96MH2 286 aaKnown RBP7.35□□□□□ -1.23
CCDC88A-212ENST00000474059 TNKS2Q9H2K2 1166 aa7.35□□□□□ -1.23
CCDC88A-212ENST00000474059 KRT82Q9NSB4 513 aa7.35□□□□□ -1.23
CCDC88A-212ENST00000474059 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP7.35□□□□□ -1.23
CCDC88A-212ENST00000474059 CEACAM5P06731 702 aa7.34□□□□□ -1.23
CCDC88A-212ENST00000474059 HCLS1P14317 486 aaPredicted RBP7.34□□□□□ -1.23
CCDC88A-212ENST00000474059 EPS8L3Q8TE67 593 aaKnown RBP7.34□□□□□ -1.23
CCDC88A-212ENST00000474059 ISL2Q96A47 359 aa7.34□□□□□ -1.23
CCDC88A-212ENST00000474059 MKNK2Q9HBH9 465 aa7.34□□□□□ -1.23
CCDC88A-212ENST00000474059 BIN1O00499 593 aa7.33□□□□□ -1.24
Retrieved 100 of 20,778 RNA–protein pairs in 19.3 ms