RNA–Protein interactions for RNA: ENST00000473376.1

CHD3-209, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

TSL 2

Gene CHD3, Length 562 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-209ENST00000473376 BRI3BPQ8WY22 251 aa16.85■□□□□ 0.29
CHD3-209ENST00000473376 ZNF341Q9BYN7 854 aa16.85■□□□□ 0.29
CHD3-209ENST00000473376 EFCC1Q9HA90 598 aa16.85■□□□□ 0.29
CHD3-209ENST00000473376 ZNF112Q9UJU3 913 aa16.85■□□□□ 0.29
CHD3-209ENST00000473376 PDE4DIPQ5VU43 2346 aa16.85■□□□□ 0.29
CHD3-209ENST00000473376 CCL15-CCL14A0A0B4J2E2 113 aa16.84■□□□□ 0.29
CHD3-209ENST00000473376 LDHBP07195 334 aaKnown RBP16.84■□□□□ 0.29
CHD3-209ENST00000473376 RARSP54136 660 aaKnown RBP16.84■□□□□ 0.29
CHD3-209ENST00000473376 CCL15Q16663 113 aa16.84■□□□□ 0.29
CHD3-209ENST00000473376 FAM163AQ96GL9 167 aaPredicted RBP16.84■□□□□ 0.29
CHD3-209ENST00000473376 WRNIP1Q96S55 665 aa16.84■□□□□ 0.29
CHD3-209ENST00000473376 SNCAIPQ9Y6H5 919 aa16.84■□□□□ 0.29
CHD3-209ENST00000473376 IPO8O15397 1037 aaKnown RBP16.83■□□□□ 0.28
CHD3-209ENST00000473376 TLR2O60603 784 aa16.83■□□□□ 0.28
CHD3-209ENST00000473376 TAF1CQ15572 869 aaPredicted RBP16.83■□□□□ 0.28
CHD3-209ENST00000473376 SLF2Q8IX21 1173 aa16.83■□□□□ 0.28
CHD3-209ENST00000473376 OTUD5Q96G74 571 aa16.83■□□□□ 0.28
CHD3-209ENST00000473376 AKAP2Q9Y2D5 859 aa16.83■□□□□ 0.28
CHD3-209ENST00000473376 DAGLAQ9Y4D2 1042 aa16.83■□□□□ 0.28
CHD3-209ENST00000473376 CACNB3P54284 484 aa16.82■□□□□ 0.28
CHD3-209ENST00000473376 PRMT2P55345 433 aa16.82■□□□□ 0.28
CHD3-209ENST00000473376 NOL9Q5SY16 702 aaKnown RBP16.82■□□□□ 0.28
CHD3-209ENST00000473376 CDC42EP5Q6NZY7 148 aa16.82■□□□□ 0.28
CHD3-209ENST00000473376 CD99L2Q8TCZ2 262 aa16.82■□□□□ 0.28
CHD3-209ENST00000473376 IDI2Q9BXS1 227 aa16.82■□□□□ 0.28
CHD3-209ENST00000473376 LRRFIP2Q9Y608 721 aaKnown RBP16.82■□□□□ 0.28
CHD3-209ENST00000473376 OTOFQ9HC10 1997 aa16.82■□□□□ 0.28
CHD3-209ENST00000473376 IRF6O14896 467 aa16.81■□□□□ 0.28
CHD3-209ENST00000473376 ENTPD3O75355 529 aa16.81■□□□□ 0.28
CHD3-209ENST00000473376 MAP4K4O95819 1239 aaPredicted RBP16.81■□□□□ 0.28
CHD3-209ENST00000473376 MAP3K10Q02779 954 aa16.81■□□□□ 0.28
CHD3-209ENST00000473376 SPTY2D1Q68D10 685 aaPredicted RBP16.81■□□□□ 0.28
CHD3-209ENST00000473376 FAM43AQ8N2R8 423 aa16.81■□□□□ 0.28
CHD3-209ENST00000473376 CNKSR2Q8WXI2 1034 aa16.81■□□□□ 0.28
CHD3-209ENST00000473376 KCNH4Q9UQ05 1017 aa16.81■□□□□ 0.28
CHD3-209ENST00000473376 GAKO14976 1311 aa16.8■□□□□ 0.28
CHD3-209ENST00000473376 IGSF3O75054 1194 aa16.8■□□□□ 0.28
CHD3-209ENST00000473376 NPM3O75607 178 aaKnown RBP16.8■□□□□ 0.28
CHD3-209ENST00000473376 PRDX5P30044 214 aa16.8■□□□□ 0.28
CHD3-209ENST00000473376 CCDC102BQ68D86 513 aa16.8■□□□□ 0.28
CHD3-209ENST00000473376 NBPF11Q86T75 865 aa16.8■□□□□ 0.28
CHD3-209ENST00000473376 ZKSCAN4Q969J2 545 aaPredicted RBP16.8■□□□□ 0.28
CHD3-209ENST00000473376 SIL1Q9H173 461 aa16.8■□□□□ 0.28
CHD3-209ENST00000473376 PHKA1P46020 1223 aa16.79■□□□□ 0.28
CHD3-209ENST00000473376 MVPQ14764 893 aaKnown RBP16.79■□□□□ 0.28
CHD3-209ENST00000473376 ANKRD23Q86SG2 305 aa16.79■□□□□ 0.28
CHD3-209ENST00000473376 MEIS3Q99687 375 aa16.79■□□□□ 0.28
CHD3-209ENST00000473376 USP40Q9NVE5 1235 aa16.79■□□□□ 0.28
CHD3-209ENST00000473376 ZBTB4Q9P1Z0 1013 aaPredicted RBP16.79■□□□□ 0.28
CHD3-209ENST00000473376 PCDH10Q9P2E7 1040 aa16.79■□□□□ 0.28
CHD3-209ENST00000473376 BTBD19C9JJ37 291 aa16.78■□□□□ 0.28
CHD3-209ENST00000473376 CXCL11O14625 94 aa16.78■□□□□ 0.28
CHD3-209ENST00000473376 KIF22Q14807 665 aa16.78■□□□□ 0.28
CHD3-209ENST00000473376 DIXDC1Q155Q3 683 aa16.78■□□□□ 0.28
CHD3-209ENST00000473376 FAM198AQ9UFP1 575 aa16.78■□□□□ 0.28
CHD3-209ENST00000473376 HTTP42858 3142 aa16.78■□□□□ 0.28
CHD3-209ENST00000473376 SRGAP3O43295 1099 aa16.77■□□□□ 0.28
CHD3-209ENST00000473376 GCC1Q96CN9 775 aa16.77■□□□□ 0.28
CHD3-209ENST00000473376 ZNF333Q96JL9 665 aa16.77■□□□□ 0.28
CHD3-209ENST00000473376 INPP5BP32019 993 aa16.76■□□□□ 0.27
CHD3-209ENST00000473376 LACTBP83111 547 aaPredicted RBP16.76■□□□□ 0.27
CHD3-209ENST00000473376 NFIAQ12857 509 aa16.76■□□□□ 0.27
CHD3-209ENST00000473376 RASGRF1Q13972 1273 aa16.76■□□□□ 0.27
CHD3-209ENST00000473376 C17orf99Q6UX52 265 aa16.76■□□□□ 0.27
CHD3-209ENST00000473376 ATF7IPQ6VMQ6 1270 aa16.76■□□□□ 0.27
CHD3-209ENST00000473376 MIGA2Q7L4E1 593 aa16.76■□□□□ 0.27
CHD3-209ENST00000473376 PA2G4Q9UQ80 394 aaKnown RBP16.76■□□□□ 0.27
CHD3-209ENST00000473376 RFX7Q2KHR2 1363 aa16.76■□□□□ 0.27
CHD3-209ENST00000473376 ATRNL1Q5VV63 1379 aa16.76■□□□□ 0.27
CHD3-209ENST00000473376 A0A1B0GUL7 405 aa16.75■□□□□ 0.27
CHD3-209ENST00000473376 GNAI2P04899 355 aa16.75■□□□□ 0.27
CHD3-209ENST00000473376 TIMM10P62072 90 aa16.75■□□□□ 0.27
CHD3-209ENST00000473376 DZIP1Q86YF9 867 aaKnown RBP16.75■□□□□ 0.27
CHD3-209ENST00000473376 XAGE2Q96GT9 111 aa16.75■□□□□ 0.27
CHD3-209ENST00000473376 TMEM106CQ9BVX2 250 aa16.75■□□□□ 0.27
CHD3-209ENST00000473376 SLC45A1Q9Y2W3 748 aa16.75■□□□□ 0.27
CHD3-209ENST00000473376 MYH13Q9UKX3 1938 aa16.74■□□□□ 0.27
CHD3-209ENST00000473376 RBBP6Q7Z6E9 1792 aaKnown RBP16.74■□□□□ 0.27
CHD3-209ENST00000473376 GPR75-ASB3A0A0A6YYF3 556 aa16.74■□□□□ 0.27
CHD3-209ENST00000473376 PHF20L1A8MW92 1017 aa16.74■□□□□ 0.27
CHD3-209ENST00000473376 TBC1D12O60347 775 aa16.74■□□□□ 0.27
CHD3-209ENST00000473376 TRIM27P14373 513 aa16.74■□□□□ 0.27
CHD3-209ENST00000473376 HOXD10P28358 340 aa16.74■□□□□ 0.27
CHD3-209ENST00000473376 GSTO1P78417 241 aa16.74■□□□□ 0.27
CHD3-209ENST00000473376 CAP1Q01518 475 aa16.74■□□□□ 0.27
CHD3-209ENST00000473376 TCP10Q12799 353 aa16.74■□□□□ 0.27
CHD3-209ENST00000473376 SLC9C1Q4G0N8 1177 aa16.74■□□□□ 0.27
CHD3-209ENST00000473376 FASTKD5Q7L8L6 764 aaKnown RBP16.74■□□□□ 0.27
CHD3-209ENST00000473376 GOLGA6L2Q8N9W4 650 aaPredicted RBP16.74■□□□□ 0.27
CHD3-209ENST00000473376 POTEFA5A3E0 1075 aa16.73■□□□□ 0.27
CHD3-209ENST00000473376 CTNND1O60716 968 aaKnown RBP16.73■□□□□ 0.27
CHD3-209ENST00000473376 LDHCP07864 332 aa16.73■□□□□ 0.27
CHD3-209ENST00000473376 ADORA1P30542 326 aa16.73■□□□□ 0.27
CHD3-209ENST00000473376 RGS3P49796 1198 aa16.73■□□□□ 0.27
CHD3-209ENST00000473376 TFCP2Q12800 502 aa16.73■□□□□ 0.27
CHD3-209ENST00000473376 MOGSQ13724 837 aa16.73■□□□□ 0.27
CHD3-209ENST00000473376 ERICH6Q7L0X2 663 aa16.73■□□□□ 0.27
CHD3-209ENST00000473376 SCYL3Q8IZE3 742 aa16.73■□□□□ 0.27
CHD3-209ENST00000473376 PARK7Q99497 189 aaKnown RBP16.73■□□□□ 0.27
CHD3-209ENST00000473376 GPR108Q9NPR9 543 aa16.73■□□□□ 0.27
Retrieved 100 of 20,778 RNA–protein pairs in 36.5 ms