RNA–Protein interactions for RNA: ENST00000471037.1

SF3A1-206, Transcript of splicing factor 3a subunit 1, humanhuman

TSL 3

Gene SF3A1, Length 555 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-206ENST00000471037 PTPRCP08575 1304 aa11.33□□□□□ -0.6
SF3A1-206ENST00000471037 KIAA0100Q14667 2235 aaKnown RBP11.32□□□□□ -0.6
SF3A1-206ENST00000471037 FRAT2O75474 233 aaPredicted RBP11.32□□□□□ -0.6
SF3A1-206ENST00000471037 BCAMP50895 628 aa11.32□□□□□ -0.6
SF3A1-206ENST00000471037 PPIL2Q13356 520 aa11.32□□□□□ -0.6
SF3A1-206ENST00000471037 SNAPC2Q13487 334 aa11.32□□□□□ -0.6
SF3A1-206ENST00000471037 PUM3Q15397 648 aaKnown RBP11.32□□□□□ -0.6
SF3A1-206ENST00000471037 DCAF15Q66K64 600 aa11.32□□□□□ -0.6
SF3A1-206ENST00000471037 MRPL50Q8N5N7 158 aaKnown RBP11.32□□□□□ -0.6
SF3A1-206ENST00000471037 WRNIP1Q96S55 665 aa11.32□□□□□ -0.6
SF3A1-206ENST00000471037 BTBD19C9JJ37 291 aa11.31□□□□□ -0.6
SF3A1-206ENST00000471037 IRF6O14896 467 aa11.31□□□□□ -0.6
SF3A1-206ENST00000471037 GNRH1P01148 92 aa11.31□□□□□ -0.6
SF3A1-206ENST00000471037 IFIT1P09914 478 aaKnown RBP11.31□□□□□ -0.6
SF3A1-206ENST00000471037 LACTBP83111 547 aaPredicted RBP11.31□□□□□ -0.6
SF3A1-206ENST00000471037 GOLGA6L2Q8N9W4 650 aaPredicted RBP11.31□□□□□ -0.6
SF3A1-206ENST00000471037 SSH1Q8WYL5 1049 aa11.31□□□□□ -0.6
SF3A1-206ENST00000471037 ZKSCAN4Q969J2 545 aaPredicted RBP11.31□□□□□ -0.6
SF3A1-206ENST00000471037 USP44Q9H0E7 712 aa11.31□□□□□ -0.6
SF3A1-206ENST00000471037 SMC4Q9NTJ3 1288 aa11.31□□□□□ -0.6
SF3A1-206ENST00000471037 SUPT16HQ9Y5B9 1047 aaKnown RBP11.31□□□□□ -0.6
SF3A1-206ENST00000471037 RFX5P48382 616 aaPredicted RBP11.3□□□□□ -0.6
SF3A1-206ENST00000471037 PRMT2P55345 433 aa11.3□□□□□ -0.6
SF3A1-206ENST00000471037 PPATQ06203 517 aa11.3□□□□□ -0.6
SF3A1-206ENST00000471037 KIF22Q14807 665 aa11.3□□□□□ -0.6
SF3A1-206ENST00000471037 KLHDC4Q8TBB5 520 aa11.3□□□□□ -0.6
SF3A1-206ENST00000471037 WDR66Q8TBY9 1149 aa11.3□□□□□ -0.6
SF3A1-206ENST00000471037 LPIN2Q92539 896 aa11.3□□□□□ -0.6
SF3A1-206ENST00000471037 ZNF341Q9BYN7 854 aa11.3□□□□□ -0.6
SF3A1-206ENST00000471037 EYA2O00167 538 aa11.29□□□□□ -0.6
SF3A1-206ENST00000471037 BCAR3O75815 825 aa11.29□□□□□ -0.6
SF3A1-206ENST00000471037 RRP1P56182 461 aaKnown RBP11.29□□□□□ -0.6
SF3A1-206ENST00000471037 C17orf99Q6UX52 265 aa11.29□□□□□ -0.6
SF3A1-206ENST00000471037 ANKRD23Q86SG2 305 aa11.29□□□□□ -0.6
SF3A1-206ENST00000471037 FAM151AQ8WW52 585 aa11.29□□□□□ -0.6
SF3A1-206ENST00000471037 ARHGAP39Q9C0H5 1083 aa11.29□□□□□ -0.6
SF3A1-206ENST00000471037 ZNF112Q9UJU3 913 aa11.29□□□□□ -0.6
SF3A1-206ENST00000471037 KCNH4Q9UQ05 1017 aa11.29□□□□□ -0.6
SF3A1-206ENST00000471037 ZSWIM8A7E2V4 1837 aa11.29□□□□□ -0.6
SF3A1-206ENST00000471037 ADGRA2Q96PE1 1338 aa11.29□□□□□ -0.6
SF3A1-206ENST00000471037 ZBTB22O15209 634 aa11.28□□□□□ -0.6
SF3A1-206ENST00000471037 SLC5A1P13866 664 aa11.28□□□□□ -0.6
SF3A1-206ENST00000471037 INPP5BP32019 993 aa11.28□□□□□ -0.6
SF3A1-206ENST00000471037 SLC4A8Q2Y0W8 1093 aa11.28□□□□□ -0.6
SF3A1-206ENST00000471037 FBXO3Q9UK99 471 aa11.28□□□□□ -0.6
SF3A1-206ENST00000471037 DAGLAQ9Y4D2 1042 aa11.28□□□□□ -0.6
SF3A1-206ENST00000471037 MYH13Q9UKX3 1938 aa11.28□□□□□ -0.6
SF3A1-206ENST00000471037 IPO8O15397 1037 aaKnown RBP11.27□□□□□ -0.61
SF3A1-206ENST00000471037 MOGSQ13724 837 aa11.27□□□□□ -0.61
SF3A1-206ENST00000471037 DIXDC1Q155Q3 683 aa11.27□□□□□ -0.61
SF3A1-206ENST00000471037 NOL9Q5SY16 702 aaKnown RBP11.27□□□□□ -0.61
SF3A1-206ENST00000471037 CDC42EP5Q6NZY7 148 aa11.27□□□□□ -0.61
SF3A1-206ENST00000471037 MIGA2Q7L4E1 593 aa11.27□□□□□ -0.61
SF3A1-206ENST00000471037 ATG9AQ7Z3C6 839 aa11.27□□□□□ -0.61
SF3A1-206ENST00000471037 SH3TC2Q8TF17 1288 aa11.27□□□□□ -0.61
SF3A1-206ENST00000471037 SRRDQ9UH36 339 aa11.27□□□□□ -0.61
SF3A1-206ENST00000471037 SALL1Q9NSC2 1324 aa11.27□□□□□ -0.61
SF3A1-206ENST00000471037 PDHXO00330 501 aa11.26□□□□□ -0.61
SF3A1-206ENST00000471037 CIAO1O76071 339 aa11.26□□□□□ -0.61
SF3A1-206ENST00000471037 NEFLP07196 543 aa11.26□□□□□ -0.61
SF3A1-206ENST00000471037 MS4A1P11836 297 aa11.26□□□□□ -0.61
SF3A1-206ENST00000471037 CTGFP29279 349 aa11.26□□□□□ -0.61
SF3A1-206ENST00000471037 PRDX5P30044 214 aa11.26□□□□□ -0.61
SF3A1-206ENST00000471037 FXR1P51114 621 aaKnown RBP eCLIP11.26□□□□□ -0.61
SF3A1-206ENST00000471037 NFIAQ12857 509 aa11.26□□□□□ -0.61
SF3A1-206ENST00000471037 ARHGAP45Q92619 1136 aa11.26□□□□□ -0.61
SF3A1-206ENST00000471037 TRIM47Q96LD4 638 aa11.26□□□□□ -0.61
SF3A1-206ENST00000471037 CPA4Q9UI42 421 aa11.26□□□□□ -0.61
SF3A1-206ENST00000471037 ATRNL1Q5VV63 1379 aa11.26□□□□□ -0.61
SF3A1-206ENST00000471037 SEMA3EO15041 775 aa11.25□□□□□ -0.61
SF3A1-206ENST00000471037 TCP10Q12799 353 aa11.25□□□□□ -0.61
SF3A1-206ENST00000471037 ATP2B3Q16720 1220 aa11.25□□□□□ -0.61
SF3A1-206ENST00000471037 ZKSCAN2Q63HK3 967 aa11.25□□□□□ -0.61
SF3A1-206ENST00000471037 FRAT1Q92837 279 aaPredicted RBP11.25□□□□□ -0.61
SF3A1-206ENST00000471037 SHISA4Q96DD7 197 aa11.25□□□□□ -0.61
SF3A1-206ENST00000471037 GNL3LQ9NVN8 582 aaKnown RBP11.25□□□□□ -0.61
SF3A1-206ENST00000471037 FAM198AQ9UFP1 575 aa11.25□□□□□ -0.61
SF3A1-206ENST00000471037 RFX7Q2KHR2 1363 aa11.25□□□□□ -0.61
SF3A1-206ENST00000471037 CXCL11O14625 94 aa11.24□□□□□ -0.61
SF3A1-206ENST00000471037 MYCP01106 439 aaPredicted RBP11.24□□□□□ -0.61
SF3A1-206ENST00000471037 LDHBP07195 334 aaKnown RBP11.24□□□□□ -0.61
SF3A1-206ENST00000471037 BCRP11274 1271 aa11.24□□□□□ -0.61
SF3A1-206ENST00000471037 OSBPP22059 807 aa11.24□□□□□ -0.61
SF3A1-206ENST00000471037 HOXD10P28358 340 aa11.24□□□□□ -0.61
SF3A1-206ENST00000471037 PSMC4P43686 418 aa11.24□□□□□ -0.61
SF3A1-206ENST00000471037 PDE3AQ14432 1141 aa11.24□□□□□ -0.61
SF3A1-206ENST00000471037 MTFR1Q15390 333 aa11.24□□□□□ -0.61
SF3A1-206ENST00000471037 ATF7IPQ6VMQ6 1270 aa11.24□□□□□ -0.61
SF3A1-206ENST00000471037 NKX2-3Q8TAU0 364 aa11.24□□□□□ -0.61
SF3A1-206ENST00000471037 PARK7Q99497 189 aaKnown RBP11.24□□□□□ -0.61
SF3A1-206ENST00000471037 IDI2Q9BXS1 227 aa11.24□□□□□ -0.61
SF3A1-206ENST00000471037 API5Q9BZZ5 524 aaKnown RBP11.24□□□□□ -0.61
SF3A1-206ENST00000471037 DENND2AQ9ULE3 1009 aa11.24□□□□□ -0.61
SF3A1-206ENST00000471037 NOB1Q9ULX3 412 aaKnown RBP11.24□□□□□ -0.61
SF3A1-206ENST00000471037 COLQQ9Y215 455 aaPredicted RBP11.24□□□□□ -0.61
SF3A1-206ENST00000471037 DOCK2Q92608 1830 aa11.23□□□□□ -0.61
SF3A1-206ENST00000471037 ENTPD3O75355 529 aa11.23□□□□□ -0.61
SF3A1-206ENST00000471037 UBTFL1P0CB47 393 aaPredicted RBP11.23□□□□□ -0.61
SF3A1-206ENST00000471037 GRK4P32298 578 aa11.23□□□□□ -0.61
SF3A1-206ENST00000471037 IL15P40933 162 aaPredicted RBP11.23□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 22.9 ms