RNA–Protein interactions for RNA: ENST00000470076.1

COL7A1-208, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 2

Gene COL7A1, Length 651 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-208ENST00000470076 SP3Q02447 781 aa21.73■■□□□ 1.07
COL7A1-208ENST00000470076 ERO1BQ86YB8 467 aa21.73■■□□□ 1.07
COL7A1-208ENST00000470076 FAM151AQ8WW52 585 aa21.73■■□□□ 1.07
COL7A1-208ENST00000470076 DAGLAQ9Y4D2 1042 aa21.73■■□□□ 1.07
COL7A1-208ENST00000470076 SNCAIPQ9Y6H5 919 aa21.73■■□□□ 1.07
COL7A1-208ENST00000470076 PHKA1P46020 1223 aa21.72■■□□□ 1.07
COL7A1-208ENST00000470076 DIXDC1Q155Q3 683 aa21.72■■□□□ 1.07
COL7A1-208ENST00000470076 AK9Q5TCS8 1911 aa21.71■■□□□ 1.07
COL7A1-208ENST00000470076 IPO8O15397 1037 aaKnown RBP21.71■■□□□ 1.07
COL7A1-208ENST00000470076 TAF1CQ15572 869 aaPredicted RBP21.71■■□□□ 1.07
COL7A1-208ENST00000470076 CDC42EP5Q6NZY7 148 aa21.71■■□□□ 1.07
COL7A1-208ENST00000470076 CD99L2Q8TCZ2 262 aa21.71■■□□□ 1.07
COL7A1-208ENST00000470076 ZKSCAN4Q969J2 545 aaPredicted RBP21.71■■□□□ 1.07
COL7A1-208ENST00000470076 ZNF341Q9BYN7 854 aa21.71■■□□□ 1.07
COL7A1-208ENST00000470076 ZFYVE28Q9HCC9 887 aa21.71■■□□□ 1.07
COL7A1-208ENST00000470076 WDHD1O75717 1129 aaPredicted RBP21.7■■□□□ 1.06
COL7A1-208ENST00000470076 CETPP11597 493 aa21.7■■□□□ 1.06
COL7A1-208ENST00000470076 MTX1Q13505 466 aa21.7■■□□□ 1.06
COL7A1-208ENST00000470076 CCDC102BQ68D86 513 aa21.7■■□□□ 1.06
COL7A1-208ENST00000470076 ZGPATQ8N5A5 531 aaKnown RBP21.7■■□□□ 1.06
COL7A1-208ENST00000470076 EFCC1Q9HA90 598 aa21.7■■□□□ 1.06
COL7A1-208ENST00000470076 SRGAP3O43295 1099 aa21.69■■□□□ 1.06
COL7A1-208ENST00000470076 ADORA1P30542 326 aa21.69■■□□□ 1.06
COL7A1-208ENST00000470076 PPIL2Q13356 520 aa21.69■■□□□ 1.06
COL7A1-208ENST00000470076 SNAPC2Q13487 334 aa21.69■■□□□ 1.06
COL7A1-208ENST00000470076 FAM43AQ8N2R8 423 aa21.69■■□□□ 1.06
COL7A1-208ENST00000470076 ZCCHC17Q9NP64 241 aaKnown RBP21.69■■□□□ 1.06
COL7A1-208ENST00000470076 AKAP2Q9Y2D5 859 aa21.69■■□□□ 1.06
COL7A1-208ENST00000470076 PTPN22Q9Y2R2 807 aa21.69■■□□□ 1.06
COL7A1-208ENST00000470076 TCP10Q12799 353 aa21.68■■□□□ 1.06
COL7A1-208ENST00000470076 ARHGEF6Q15052 776 aa21.68■■□□□ 1.06
COL7A1-208ENST00000470076 MIGA2Q7L4E1 593 aa21.68■■□□□ 1.06
COL7A1-208ENST00000470076 USP40Q9NVE5 1235 aa21.68■■□□□ 1.06
COL7A1-208ENST00000470076 PDS5AQ29RF7 1337 aaKnown RBP21.68■■□□□ 1.06
COL7A1-208ENST00000470076 MYH2Q9UKX2 1941 aa21.68■■□□□ 1.06
COL7A1-208ENST00000470076 IRF6O14896 467 aa21.67■■□□□ 1.06
COL7A1-208ENST00000470076 TRIM27P14373 513 aa21.67■■□□□ 1.06
COL7A1-208ENST00000470076 TIMM10P62072 90 aa21.67■■□□□ 1.06
COL7A1-208ENST00000470076 PPATQ06203 517 aa21.67■■□□□ 1.06
COL7A1-208ENST00000470076 NFIAQ12857 509 aa21.67■■□□□ 1.06
COL7A1-208ENST00000470076 CENPFP49454 3210 aa21.67■■□□□ 1.06
COL7A1-208ENST00000470076 A0A1B0GUL7 405 aa21.66■■□□□ 1.06
COL7A1-208ENST00000470076 RASGRF1Q13972 1273 aa21.66■■□□□ 1.06
COL7A1-208ENST00000470076 ATF7IPQ6VMQ6 1270 aa21.66■■□□□ 1.06
COL7A1-208ENST00000470076 FAM198AQ9UFP1 575 aa21.66■■□□□ 1.06
COL7A1-208ENST00000470076 ZNF112Q9UJU3 913 aa21.66■■□□□ 1.06
COL7A1-208ENST00000470076 INPP5BP32019 993 aa21.65■■□□□ 1.06
COL7A1-208ENST00000470076 TFCP2Q12800 502 aa21.65■■□□□ 1.06
COL7A1-208ENST00000470076 MVPQ14764 893 aaKnown RBP21.65■■□□□ 1.06
COL7A1-208ENST00000470076 SPTY2D1Q68D10 685 aaPredicted RBP21.65■■□□□ 1.06
COL7A1-208ENST00000470076 SLF2Q8IX21 1173 aa21.65■■□□□ 1.06
COL7A1-208ENST00000470076 GAKO14976 1311 aa21.64■■□□□ 1.05
COL7A1-208ENST00000470076 BTBD19C9JJ37 291 aa21.64■■□□□ 1.05
COL7A1-208ENST00000470076 TLR2O60603 784 aa21.64■■□□□ 1.05
COL7A1-208ENST00000470076 GNAI2P04899 355 aa21.64■■□□□ 1.05
COL7A1-208ENST00000470076 DZIP1Q86YF9 867 aaKnown RBP21.64■■□□□ 1.05
COL7A1-208ENST00000470076 FRAT1Q92837 279 aaPredicted RBP21.64■■□□□ 1.05
COL7A1-208ENST00000470076 XAGE2Q96GT9 111 aa21.64■■□□□ 1.05
COL7A1-208ENST00000470076 IDI2Q9BXS1 227 aa21.64■■□□□ 1.05
COL7A1-208ENST00000470076 ABCF2Q9UG63 623 aa21.64■■□□□ 1.05
COL7A1-208ENST00000470076 KIAA0100Q14667 2235 aaKnown RBP21.64■■□□□ 1.05
COL7A1-208ENST00000470076 ENTPD3O75355 529 aa21.63■■□□□ 1.05
COL7A1-208ENST00000470076 BCAR3O75815 825 aa21.63■■□□□ 1.05
COL7A1-208ENST00000470076 CAP1Q01518 475 aa21.63■■□□□ 1.05
COL7A1-208ENST00000470076 NOL9Q5SY16 702 aaKnown RBP21.63■■□□□ 1.05
COL7A1-208ENST00000470076 ARMC5Q96C12 935 aa21.63■■□□□ 1.05
COL7A1-208ENST00000470076 FAM163AQ96GL9 167 aaPredicted RBP21.63■■□□□ 1.05
COL7A1-208ENST00000470076 DOCK2Q92608 1830 aa21.62■■□□□ 1.05
COL7A1-208ENST00000470076 RBBP6Q7Z6E9 1792 aaKnown RBP21.62■■□□□ 1.05
COL7A1-208ENST00000470076 SLC34A2O95436 690 aa21.62■■□□□ 1.05
COL7A1-208ENST00000470076 RGS3P49796 1198 aa21.61■■□□□ 1.05
COL7A1-208ENST00000470076 PRPF38BQ5VTL8 546 aaKnown RBP21.61■■□□□ 1.05
COL7A1-208ENST00000470076 ZFPM1Q8IX07 1006 aa21.61■■□□□ 1.05
COL7A1-208ENST00000470076 GOLGA6L2Q8N9W4 650 aaPredicted RBP21.61■■□□□ 1.05
COL7A1-208ENST00000470076 CLUAP1Q96AJ1 413 aa21.61■■□□□ 1.05
COL7A1-208ENST00000470076 NEUROD6Q96NK8 337 aa21.61■■□□□ 1.05
COL7A1-208ENST00000470076 KCNH4Q9UQ05 1017 aa21.61■■□□□ 1.05
COL7A1-208ENST00000470076 TNNQ9UQP3 1299 aa21.61■■□□□ 1.05
COL7A1-208ENST00000470076 RFX7Q2KHR2 1363 aa21.61■■□□□ 1.05
COL7A1-208ENST00000470076 KIF22Q14807 665 aa21.6■■□□□ 1.05
COL7A1-208ENST00000470076 ANKRD23Q86SG2 305 aa21.6■■□□□ 1.05
COL7A1-208ENST00000470076 ATRNL1Q5VV63 1379 aa21.6■■□□□ 1.05
COL7A1-208ENST00000470076 G3BP1Q13283 466 aaKnown RBP eCLIP21.59■■□□□ 1.05
COL7A1-208ENST00000470076 GORABQ5T7V8 394 aa21.59■■□□□ 1.05
COL7A1-208ENST00000470076 ZKSCAN2Q63HK3 967 aa21.59■■□□□ 1.05
COL7A1-208ENST00000470076 ERICH6Q7L0X2 663 aa21.59■■□□□ 1.05
COL7A1-208ENST00000470076 MROH7-TTC4A0A0A0MT08 1334 aa21.58■■□□□ 1.05
COL7A1-208ENST00000470076 PNMA6EA0A0J9YXQ4 647 aa21.58■■□□□ 1.05
COL7A1-208ENST00000470076 POTEFA5A3E0 1075 aa21.58■■□□□ 1.05
COL7A1-208ENST00000470076 GNRH1P01148 92 aa21.58■■□□□ 1.05
COL7A1-208ENST00000470076 BTDP43251 543 aa21.58■■□□□ 1.05
COL7A1-208ENST00000470076 LACTBP83111 547 aaPredicted RBP21.58■■□□□ 1.05
COL7A1-208ENST00000470076 MECOMQ03112 1051 aa21.58■■□□□ 1.05
COL7A1-208ENST00000470076 NBPF11Q86T75 865 aa21.58■■□□□ 1.05
COL7A1-208ENST00000470076 ZSCAN29Q8IWY8 852 aaPredicted RBP21.58■■□□□ 1.05
COL7A1-208ENST00000470076 HMG20BQ9P0W2 317 aa21.58■■□□□ 1.05
COL7A1-208ENST00000470076 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP21.58■■□□□ 1.05
COL7A1-208ENST00000470076 CXCL11O14625 94 aa21.57■■□□□ 1.04
COL7A1-208ENST00000470076 MAP3K10Q02779 954 aa21.57■■□□□ 1.04
COL7A1-208ENST00000470076 SLC9C1Q4G0N8 1177 aa21.57■■□□□ 1.04
Retrieved 100 of 20,778 RNA–protein pairs in 17.2 ms