RNA–Protein interactions for RNA: ENST00000467985.1

COL7A1-207, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 5

Gene COL7A1, Length 709 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-207ENST00000467985 RLBP1P12271 317 aa23.54■■□□□ 1.36
COL7A1-207ENST00000467985 MAP3K9P80192 1104 aa23.54■■□□□ 1.36
COL7A1-207ENST00000467985 CSADQ9Y600 493 aa23.54■■□□□ 1.36
COL7A1-207ENST00000467985 TBC1D8O95759 1140 aa23.53■■□□□ 1.36
COL7A1-207ENST00000467985 DCAF15Q66K64 600 aa23.53■■□□□ 1.36
COL7A1-207ENST00000467985 OTUD7BQ6GQQ9 843 aa23.53■■□□□ 1.36
COL7A1-207ENST00000467985 CDC42EP5Q6NZY7 148 aa23.53■■□□□ 1.36
COL7A1-207ENST00000467985 DZIP1Q86YF9 867 aaKnown RBP23.53■■□□□ 1.36
COL7A1-207ENST00000467985 DDX55Q8NHQ9 600 aaKnown RBP eCLIP23.53■■□□□ 1.36
COL7A1-207ENST00000467985 FAM151AQ8WW52 585 aa23.53■■□□□ 1.36
COL7A1-207ENST00000467985 OS9Q13438 667 aaPredicted RBP23.52■■□□□ 1.36
COL7A1-207ENST00000467985 PPP1R3FQ6ZSY5 799 aaPredicted RBP23.52■■□□□ 1.36
COL7A1-207ENST00000467985 IFNL1Q8IU54 200 aa23.52■■□□□ 1.36
COL7A1-207ENST00000467985 ELP3Q9H9T3 547 aa23.52■■□□□ 1.36
COL7A1-207ENST00000467985 GPR108Q9NPR9 543 aa23.52■■□□□ 1.36
COL7A1-207ENST00000467985 ABCF2Q9UG63 623 aa23.52■■□□□ 1.36
COL7A1-207ENST00000467985 VGLL4Q14135 290 aa23.51■■□□□ 1.35
COL7A1-207ENST00000467985 CTU1Q7Z7A3 348 aaKnown RBP23.51■■□□□ 1.35
COL7A1-207ENST00000467985 OPTNQ96CV9 577 aa23.51■■□□□ 1.35
COL7A1-207ENST00000467985 USP40Q9NVE5 1235 aa23.51■■□□□ 1.35
COL7A1-207ENST00000467985 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP23.51■■□□□ 1.35
COL7A1-207ENST00000467985 GPR25O00155 361 aa23.5■■□□□ 1.35
COL7A1-207ENST00000467985 UQCRFS1P1P0C7P4 283 aa23.5■■□□□ 1.35
COL7A1-207ENST00000467985 ARID4AP29374 1257 aaPredicted RBP23.5■■□□□ 1.35
COL7A1-207ENST00000467985 SPATA5Q8NB90 893 aa23.5■■□□□ 1.35
COL7A1-207ENST00000467985 ZNF296Q8WUU4 475 aaPredicted RBP23.5■■□□□ 1.35
COL7A1-207ENST00000467985 FAM163AQ96GL9 167 aaPredicted RBP23.5■■□□□ 1.35
COL7A1-207ENST00000467985 C1orf115Q9H7X2 142 aa23.5■■□□□ 1.35
COL7A1-207ENST00000467985 GAKO14976 1311 aa23.5■■□□□ 1.35
COL7A1-207ENST00000467985 MYH2Q9UKX2 1941 aa23.49■■□□□ 1.35
COL7A1-207ENST00000467985 CCDC85CA6NKD9 419 aa23.49■■□□□ 1.35
COL7A1-207ENST00000467985 SURF6O75683 361 aaKnown RBP23.49■■□□□ 1.35
COL7A1-207ENST00000467985 GJA5P36382 358 aa23.49■■□□□ 1.35
COL7A1-207ENST00000467985 ERICH6Q7L0X2 663 aa23.49■■□□□ 1.35
COL7A1-207ENST00000467985 WRNIP1Q96S55 665 aa23.49■■□□□ 1.35
COL7A1-207ENST00000467985 HMG20BQ9P0W2 317 aa23.49■■□□□ 1.35
COL7A1-207ENST00000467985 NOP58Q9Y2X3 529 aaKnown RBP23.49■■□□□ 1.35
COL7A1-207ENST00000467985 TESPA1A2RU30 521 aaPredicted RBP23.48■■□□□ 1.35
COL7A1-207ENST00000467985 ZNF341Q9BYN7 854 aa23.48■■□□□ 1.35
COL7A1-207ENST00000467985 IGF2BP3O00425 579 aaKnown RBP eCLIP23.47■■□□□ 1.35
COL7A1-207ENST00000467985 GTF2A2P52657 109 aa23.47■■□□□ 1.35
COL7A1-207ENST00000467985 GSTO1P78417 241 aa23.47■■□□□ 1.35
COL7A1-207ENST00000467985 TCP10Q12799 353 aa23.47■■□□□ 1.35
COL7A1-207ENST00000467985 NFIAQ12857 509 aa23.47■■□□□ 1.35
COL7A1-207ENST00000467985 PKN2Q16513 984 aaKnown RBP23.47■■□□□ 1.35
COL7A1-207ENST00000467985 TNNI3KQ59H18 835 aa23.47■■□□□ 1.35
COL7A1-207ENST00000467985 PANK1Q8TE04 598 aa23.47■■□□□ 1.35
COL7A1-207ENST00000467985 IDI2Q9BXS1 227 aa23.47■■□□□ 1.35
COL7A1-207ENST00000467985 FPGT-TNNI3KV9GXZ4 949 aa23.47■■□□□ 1.35
COL7A1-207ENST00000467985 MROH7-TTC4A0A0A0MT08 1334 aa23.46■■□□□ 1.35
COL7A1-207ENST00000467985 SPDYE5A6NIY4 337 aa23.46■■□□□ 1.35
COL7A1-207ENST00000467985 FKTNO75072 461 aa23.46■■□□□ 1.35
COL7A1-207ENST00000467985 ENTPD3O75355 529 aa23.46■■□□□ 1.35
COL7A1-207ENST00000467985 ERO1BQ86YB8 467 aa23.46■■□□□ 1.35
COL7A1-207ENST00000467985 FAM198AQ9UFP1 575 aa23.46■■□□□ 1.35
COL7A1-207ENST00000467985 LDHCP07864 332 aa23.45■■□□□ 1.34
COL7A1-207ENST00000467985 MECOMQ03112 1051 aa23.45■■□□□ 1.34
COL7A1-207ENST00000467985 CCDC158Q5M9N0 1113 aa23.45■■□□□ 1.34
COL7A1-207ENST00000467985 OTUD5Q96G74 571 aa23.45■■□□□ 1.34
COL7A1-207ENST00000467985 MS4A4AQ96JQ5 239 aa23.45■■□□□ 1.34
COL7A1-207ENST00000467985 SNCAIPQ9Y6H5 919 aa23.45■■□□□ 1.34
COL7A1-207ENST00000467985 AK9Q5TCS8 1911 aa23.45■■□□□ 1.34
COL7A1-207ENST00000467985 MAP4K4O95819 1239 aaPredicted RBP23.44■■□□□ 1.34
COL7A1-207ENST00000467985 CEP85Q6P2H3 762 aa23.44■■□□□ 1.34
COL7A1-207ENST00000467985 MIGA2Q7L4E1 593 aa23.44■■□□□ 1.34
COL7A1-207ENST00000467985 ZKSCAN4Q969J2 545 aaPredicted RBP23.44■■□□□ 1.34
COL7A1-207ENST00000467985 GPR75-ASB3A0A0A6YYF3 556 aa23.43■■□□□ 1.34
COL7A1-207ENST00000467985 MCAMP43121 646 aa23.43■■□□□ 1.34
COL7A1-207ENST00000467985 BTDP43251 543 aa23.43■■□□□ 1.34
COL7A1-207ENST00000467985 RGS3P49796 1198 aa23.43■■□□□ 1.34
COL7A1-207ENST00000467985 TTC39AQ5SRH9 613 aa23.43■■□□□ 1.34
COL7A1-207ENST00000467985 PI16Q6UXB8 463 aa23.43■■□□□ 1.34
COL7A1-207ENST00000467985 CNKSR2Q8WXI2 1034 aa23.43■■□□□ 1.34
COL7A1-207ENST00000467985 PTPN18Q99952 460 aa23.43■■□□□ 1.34
COL7A1-207ENST00000467985 R3HDMLQ9H3Y0 253 aa23.43■■□□□ 1.34
COL7A1-207ENST00000467985 ZNF112Q9UJU3 913 aa23.43■■□□□ 1.34
COL7A1-207ENST00000467985 CCL15-CCL14A0A0B4J2E2 113 aa23.42■■□□□ 1.34
COL7A1-207ENST00000467985 PPIL2Q13356 520 aa23.42■■□□□ 1.34
COL7A1-207ENST00000467985 CCL15Q16663 113 aa23.42■■□□□ 1.34
COL7A1-207ENST00000467985 ERC1Q8IUD2 1116 aa23.42■■□□□ 1.34
COL7A1-207ENST00000467985 NSUN4Q96CB9 384 aaKnown RBP23.42■■□□□ 1.34
COL7A1-207ENST00000467985 ZNF512BQ96KM6 892 aaPredicted RBP23.42■■□□□ 1.34
COL7A1-207ENST00000467985 CHMP4BQ9H444 224 aaKnown RBP23.42■■□□□ 1.34
COL7A1-207ENST00000467985 RAI14Q9P0K7 980 aa23.42■■□□□ 1.34
COL7A1-207ENST00000467985 LRP2BPQ9P2M1 347 aa23.42■■□□□ 1.34
COL7A1-207ENST00000467985 RCAN3Q9UKA8 241 aa23.42■■□□□ 1.34
COL7A1-207ENST00000467985 DDX19BQ9UMR2 479 aa23.42■■□□□ 1.34
COL7A1-207ENST00000467985 RFX7Q2KHR2 1363 aa23.41■■□□□ 1.34
COL7A1-207ENST00000467985 IGSF3O75054 1194 aa23.41■■□□□ 1.34
COL7A1-207ENST00000467985 CETPP11597 493 aa23.41■■□□□ 1.34
COL7A1-207ENST00000467985 PPATQ06203 517 aa23.41■■□□□ 1.34
COL7A1-207ENST00000467985 TBC1D9Q6ZT07 1266 aa23.41■■□□□ 1.34
COL7A1-207ENST00000467985 BRI3BPQ8WY22 251 aa23.41■■□□□ 1.34
COL7A1-207ENST00000467985 DBNDD2Q9BQY9 259 aa23.41■■□□□ 1.34
COL7A1-207ENST00000467985 NPM3O75607 178 aaKnown RBP23.4■■□□□ 1.34
COL7A1-207ENST00000467985 WDHD1O75717 1129 aaPredicted RBP23.4■■□□□ 1.34
COL7A1-207ENST00000467985 CRHR2Q13324 411 aa23.4■■□□□ 1.34
COL7A1-207ENST00000467985 SNAPC2Q13487 334 aa23.4■■□□□ 1.34
COL7A1-207ENST00000467985 HSP90AB4PQ58FF6 505 aa23.4■■□□□ 1.34
COL7A1-207ENST00000467985 ZNF384Q8TF68 577 aa23.4■■□□□ 1.34
Retrieved 100 of 20,778 RNA–protein pairs in 222.1 ms