RNA–Protein interactions for RNA: ENST00000461553.1

USP4-206, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 4

Gene USP4, Length 544 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-206ENST00000461553 ZNF296Q8WUU4 475 aaPredicted RBP17.24■□□□□ 0.35
USP4-206ENST00000461553 OPTNQ96CV9 577 aa17.24■□□□□ 0.35
USP4-206ENST00000461553 XAGE2Q96GT9 111 aa17.24■□□□□ 0.35
USP4-206ENST00000461553 CFHR5Q9BXR6 569 aa17.24■□□□□ 0.35
USP4-206ENST00000461553 GPR25O00155 361 aa17.23■□□□□ 0.35
USP4-206ENST00000461553 GJA5P36382 358 aa17.23■□□□□ 0.35
USP4-206ENST00000461553 TIMM10P62072 90 aa17.23■□□□□ 0.35
USP4-206ENST00000461553 G3BP1Q13283 466 aaKnown RBP eCLIP17.23■□□□□ 0.35
USP4-206ENST00000461553 DCAF15Q66K64 600 aa17.23■□□□□ 0.35
USP4-206ENST00000461553 OTUD7BQ6GQQ9 843 aa17.23■□□□□ 0.35
USP4-206ENST00000461553 NEUROD6Q96NK8 337 aa17.23■□□□□ 0.35
USP4-206ENST00000461553 MAP3K9P80192 1104 aa17.22■□□□□ 0.35
USP4-206ENST00000461553 GORABQ5T7V8 394 aa17.22■□□□□ 0.35
USP4-206ENST00000461553 PPP1R3FQ6ZSY5 799 aaPredicted RBP17.22■□□□□ 0.35
USP4-206ENST00000461553 WRNIP1Q96S55 665 aa17.22■□□□□ 0.35
USP4-206ENST00000461553 ABCF2Q9UG63 623 aa17.22■□□□□ 0.35
USP4-206ENST00000461553 DOCK1Q14185 1865 aa17.22■□□□□ 0.35
USP4-206ENST00000461553 MYO5AQ9Y4I1 1855 aaKnown RBP17.22■□□□□ 0.35
USP4-206ENST00000461553 IGF2BP3O00425 579 aaKnown RBP eCLIP17.21■□□□□ 0.35
USP4-206ENST00000461553 FKTNO75072 461 aa17.21■□□□□ 0.35
USP4-206ENST00000461553 OS9Q13438 667 aaPredicted RBP17.21■□□□□ 0.35
USP4-206ENST00000461553 SPTY2D1Q68D10 685 aaPredicted RBP17.21■□□□□ 0.35
USP4-206ENST00000461553 CDC42EP5Q6NZY7 148 aa17.21■□□□□ 0.35
USP4-206ENST00000461553 SLF2Q8IX21 1173 aa17.21■□□□□ 0.35
USP4-206ENST00000461553 FAM151AQ8WW52 585 aa17.21■□□□□ 0.35
USP4-206ENST00000461553 C1orf115Q9H7X2 142 aa17.21■□□□□ 0.35
USP4-206ENST00000461553 GAKO14976 1311 aa17.21■□□□□ 0.34
USP4-206ENST00000461553 CDK5RAP2Q96SN8 1893 aa17.2■□□□□ 0.34
USP4-206ENST00000461553 TCP10Q12799 353 aa17.2■□□□□ 0.34
USP4-206ENST00000461553 PKN2Q16513 984 aaKnown RBP17.2■□□□□ 0.34
USP4-206ENST00000461553 OTUD5Q96G74 571 aa17.2■□□□□ 0.34
USP4-206ENST00000461553 ZNF341Q9BYN7 854 aa17.2■□□□□ 0.34
USP4-206ENST00000461553 RFX7Q2KHR2 1363 aa17.19■□□□□ 0.34
USP4-206ENST00000461553 SPDYE5A6NIY4 337 aa17.19■□□□□ 0.34
USP4-206ENST00000461553 RLBP1P12271 317 aa17.19■□□□□ 0.34
USP4-206ENST00000461553 GTF2A2P52657 109 aa17.19■□□□□ 0.34
USP4-206ENST00000461553 NFIAQ12857 509 aa17.19■□□□□ 0.34
USP4-206ENST00000461553 ERICH6Q7L0X2 663 aa17.19■□□□□ 0.34
USP4-206ENST00000461553 CNKSR2Q8WXI2 1034 aa17.19■□□□□ 0.34
USP4-206ENST00000461553 USP40Q9NVE5 1235 aa17.19■□□□□ 0.34
USP4-206ENST00000461553 SNCAIPQ9Y6H5 919 aa17.19■□□□□ 0.34
USP4-206ENST00000461553 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP17.19■□□□□ 0.34
USP4-206ENST00000461553 FOCADQ5VW36 1801 aa17.19■□□□□ 0.34
USP4-206ENST00000461553 ATAD5Q96QE3 1844 aa17.19■□□□□ 0.34
USP4-206ENST00000461553 PTPRFP10586 1907 aa17.18■□□□□ 0.34
USP4-206ENST00000461553 TESPA1A2RU30 521 aaPredicted RBP17.18■□□□□ 0.34
USP4-206ENST00000461553 ARID4AP29374 1257 aaPredicted RBP17.18■□□□□ 0.34
USP4-206ENST00000461553 POLA2Q14181 598 aa17.18■□□□□ 0.34
USP4-206ENST00000461553 SPATA5Q8NB90 893 aa17.18■□□□□ 0.34
USP4-206ENST00000461553 SSH3Q8TE77 659 aa17.18■□□□□ 0.34
USP4-206ENST00000461553 R3HDMLQ9H3Y0 253 aa17.18■□□□□ 0.34
USP4-206ENST00000461553 MROH7-TTC4A0A0A0MT08 1334 aa17.18■□□□□ 0.34
USP4-206ENST00000461553 CCL15-CCL14A0A0B4J2E2 113 aa17.17■□□□□ 0.34
USP4-206ENST00000461553 UQCRFS1P1P0C7P4 283 aa17.17■□□□□ 0.34
USP4-206ENST00000461553 BTDP43251 543 aa17.17■□□□□ 0.34
USP4-206ENST00000461553 ATP8B2P98198 1209 aa17.17■□□□□ 0.34
USP4-206ENST00000461553 CRHR2Q13324 411 aa17.17■□□□□ 0.34
USP4-206ENST00000461553 CCL15Q16663 113 aa17.17■□□□□ 0.34
USP4-206ENST00000461553 MIGA2Q7L4E1 593 aa17.17■□□□□ 0.34
USP4-206ENST00000461553 ERO1BQ86YB8 467 aa17.17■□□□□ 0.34
USP4-206ENST00000461553 HMG20BQ9P0W2 317 aa17.17■□□□□ 0.34
USP4-206ENST00000461553 FAM198AQ9UFP1 575 aa17.17■□□□□ 0.34
USP4-206ENST00000461553 HTTP42858 3142 aa17.16■□□□□ 0.34
USP4-206ENST00000461553 SURF6O75683 361 aaKnown RBP17.16■□□□□ 0.34
USP4-206ENST00000461553 RGS3P49796 1198 aa17.16■□□□□ 0.34
USP4-206ENST00000461553 TNNI3KQ59H18 835 aa17.16■□□□□ 0.34
USP4-206ENST00000461553 PI16Q6UXB8 463 aa17.16■□□□□ 0.34
USP4-206ENST00000461553 ZKSCAN4Q969J2 545 aaPredicted RBP17.16■□□□□ 0.34
USP4-206ENST00000461553 MS4A4AQ96JQ5 239 aa17.16■□□□□ 0.34
USP4-206ENST00000461553 GPR108Q9NPR9 543 aa17.16■□□□□ 0.34
USP4-206ENST00000461553 FPGT-TNNI3KV9GXZ4 949 aa17.16■□□□□ 0.34
USP4-206ENST00000461553 ENTPD3O75355 529 aa17.15■□□□□ 0.34
USP4-206ENST00000461553 MS4A1P11836 297 aa17.15■□□□□ 0.34
USP4-206ENST00000461553 MCAMP43121 646 aa17.15■□□□□ 0.34
USP4-206ENST00000461553 GSTO1P78417 241 aa17.15■□□□□ 0.34
USP4-206ENST00000461553 MECOMQ03112 1051 aa17.15■□□□□ 0.34
USP4-206ENST00000461553 PPIL2Q13356 520 aa17.15■□□□□ 0.34
USP4-206ENST00000461553 TAF1CQ15572 869 aaPredicted RBP17.15■□□□□ 0.34
USP4-206ENST00000461553 TTC39AQ5SRH9 613 aa17.15■□□□□ 0.34
USP4-206ENST00000461553 FBXO46Q6PJ61 603 aaPredicted RBP17.15■□□□□ 0.34
USP4-206ENST00000461553 BRI3BPQ8WY22 251 aa17.15■□□□□ 0.34
USP4-206ENST00000461553 ERO1AQ96HE7 468 aa17.15■□□□□ 0.34
USP4-206ENST00000461553 PTPN18Q99952 460 aa17.15■□□□□ 0.34
USP4-206ENST00000461553 IDI2Q9BXS1 227 aa17.15■□□□□ 0.34
USP4-206ENST00000461553 HPS5Q9UPZ3 1129 aa17.15■□□□□ 0.34
USP4-206ENST00000461553 PDE4DIPQ5VU43 2346 aa17.15■□□□□ 0.34
USP4-206ENST00000461553 PHIPQ8WWQ0 1821 aa17.14■□□□□ 0.34
USP4-206ENST00000461553 ZBTB7BO15156 539 aaPredicted RBP17.14■□□□□ 0.33
USP4-206ENST00000461553 WDHD1O75717 1129 aaPredicted RBP17.14■□□□□ 0.33
USP4-206ENST00000461553 CETPP11597 493 aa17.14■□□□□ 0.33
USP4-206ENST00000461553 MLLT1Q03111 559 aaPredicted RBP17.14■□□□□ 0.33
USP4-206ENST00000461553 SNAPC2Q13487 334 aa17.14■□□□□ 0.33
USP4-206ENST00000461553 PICALMQ13492 652 aa17.14■□□□□ 0.33
USP4-206ENST00000461553 CCDC158Q5M9N0 1113 aa17.14■□□□□ 0.33
USP4-206ENST00000461553 ZSCAN29Q8IWY8 852 aaPredicted RBP17.14■□□□□ 0.33
USP4-206ENST00000461553 PANK1Q8TE04 598 aa17.14■□□□□ 0.33
USP4-206ENST00000461553 FAM163AQ96GL9 167 aaPredicted RBP17.14■□□□□ 0.33
USP4-206ENST00000461553 RAI14Q9P0K7 980 aa17.14■□□□□ 0.33
USP4-206ENST00000461553 ATRNL1Q5VV63 1379 aa17.14■□□□□ 0.33
USP4-206ENST00000461553 RBBP6Q7Z6E9 1792 aaKnown RBP17.13■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 12.6 ms