RNA–Protein interactions for RNA: ENST00000461520.5

USP54-208, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 1 (best)

Gene USP54, Length 1,212 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-208ENST00000461520 NID1P14543 1247 aa10.41□□□□□ -0.74
USP54-208ENST00000461520 BAG6P46379 1132 aa10.41□□□□□ -0.74
USP54-208ENST00000461520 TREML1Q86YW5 311 aa10.41□□□□□ -0.74
USP54-208ENST00000461520 PBXIP1Q96AQ6 731 aa10.41□□□□□ -0.74
USP54-208ENST00000461520 SERPINA10Q9UK55 444 aa10.41□□□□□ -0.74
USP54-208ENST00000461520 NRAPQ86VF7 1730 aa10.41□□□□□ -0.74
USP54-208ENST00000461520 POLR3AO14802 1390 aaPredicted RBP10.4□□□□□ -0.74
USP54-208ENST00000461520 SPATA31C1P0DKV0 1188 aa10.4□□□□□ -0.74
USP54-208ENST00000461520 KRT27Q7Z3Y8 459 aa10.4□□□□□ -0.74
USP54-208ENST00000461520 BTG4Q9NY30 223 aa10.4□□□□□ -0.74
USP54-208ENST00000461520 RTCBQ9Y3I0 505 aaKnown RBP10.4□□□□□ -0.74
USP54-208ENST00000461520 COL14A1Q05707 1796 aaKnown RBP10.39□□□□□ -0.75
USP54-208ENST00000461520 ACEP12821 1306 aa10.39□□□□□ -0.75
USP54-208ENST00000461520 CENPJQ9HC77 1338 aaPredicted RBP10.39□□□□□ -0.75
USP54-208ENST00000461520 SPDYE3A6NKU9 549 aa10.39□□□□□ -0.75
USP54-208ENST00000461520 LILRB5O75023 590 aa10.39□□□□□ -0.75
USP54-208ENST00000461520 NAA30Q147X3 362 aaPredicted RBP10.39□□□□□ -0.75
USP54-208ENST00000461520 NBPF8Q3BBV2 869 aa10.39□□□□□ -0.75
USP54-208ENST00000461520 RGL4Q8IZJ4 473 aa10.39□□□□□ -0.75
USP54-208ENST00000461520 CXXC1Q9P0U4 656 aaPredicted RBP10.39□□□□□ -0.75
USP54-208ENST00000461520 NAGPAQ9UK23 515 aa10.39□□□□□ -0.75
USP54-208ENST00000461520 PRRT3Q5FWE3 981 aa10.38□□□□□ -0.75
USP54-208ENST00000461520 FAM26DQ5JW98 314 aa10.38□□□□□ -0.75
USP54-208ENST00000461520 PSAPL1Q6NUJ1 521 aa10.38□□□□□ -0.75
USP54-208ENST00000461520 ETFBKMTQ8IXQ9 262 aa10.38□□□□□ -0.75
USP54-208ENST00000461520 CMTR1Q8N1G2 835 aaKnown RBP10.38□□□□□ -0.75
USP54-208ENST00000461520 JPH1Q9HDC5 661 aaPredicted RBP10.38□□□□□ -0.75
USP54-208ENST00000461520 PRDM11Q9NQV5 511 aa10.38□□□□□ -0.75
USP54-208ENST00000461520 RGPD1P0DJD0 1748 aa10.38□□□□□ -0.75
USP54-208ENST00000461520 CRYBG1Q9Y4K1 1723 aa10.38□□□□□ -0.75
USP54-208ENST00000461520 TOPAZ1Q8N9V7 1692 aa10.38□□□□□ -0.75
USP54-208ENST00000461520 ZBTB42B2RXF5 422 aa10.37□□□□□ -0.75
USP54-208ENST00000461520 MAP3K6O95382 1288 aa10.37□□□□□ -0.75
USP54-208ENST00000461520 RARAP10276 462 aa10.37□□□□□ -0.75
USP54-208ENST00000461520 TRAPPC3LQ5T215 181 aa10.37□□□□□ -0.75
USP54-208ENST00000461520 C16orf46Q6P387 395 aa10.37□□□□□ -0.75
USP54-208ENST00000461520 SPATA31A5Q5VU36 1347 aa10.36□□□□□ -0.75
USP54-208ENST00000461520 SPATA31A7Q8IWB4 1347 aa10.36□□□□□ -0.75
USP54-208ENST00000461520 FURINP09958 794 aa10.36□□□□□ -0.75
USP54-208ENST00000461520 CPB1P15086 417 aa10.36□□□□□ -0.75
USP54-208ENST00000461520 MLLT1Q03111 559 aaPredicted RBP10.36□□□□□ -0.75
USP54-208ENST00000461520 TRIM28Q13263 835 aaKnown RBP10.36□□□□□ -0.75
USP54-208ENST00000461520 DHX32Q7L7V1 743 aaKnown RBP10.36□□□□□ -0.75
USP54-208ENST00000461520 FAM35AQ86V20 835 aa10.36□□□□□ -0.75
USP54-208ENST00000461520 SIN3AQ96ST3 1273 aa10.36□□□□□ -0.75
USP54-208ENST00000461520 BRD4O60885 1362 aaPredicted RBP10.36□□□□□ -0.75
USP54-208ENST00000461520 KIAA0232Q92628 1395 aa10.36□□□□□ -0.75
USP54-208ENST00000461520 PPIP5K1Q6PFW1 1433 aa10.35□□□□□ -0.75
USP54-208ENST00000461520 ADAM23O75077 832 aa10.35□□□□□ -0.75
USP54-208ENST00000461520 XYLBO75191 536 aa10.35□□□□□ -0.75
USP54-208ENST00000461520 ABTB2Q8N961 1025 aa10.35□□□□□ -0.75
USP54-208ENST00000461520 CLP1Q92989 425 aaKnown RBP10.35□□□□□ -0.75
USP54-208ENST00000461520 C11orf16Q9NQ32 467 aa10.35□□□□□ -0.75
USP54-208ENST00000461520 PHRF1Q9P1Y6 1649 aaKnown RBP10.34□□□□□ -0.75
USP54-208ENST00000461520 TNS1Q9HBL0 1735 aaKnown RBP10.34□□□□□ -0.75
USP54-208ENST00000461520 RGS9O75916 674 aaPredicted RBP10.34□□□□□ -0.75
USP54-208ENST00000461520 BRD2P25440 801 aaKnown RBP10.34□□□□□ -0.75
USP54-208ENST00000461520 AFF1P51825 1210 aaKnown RBP10.34□□□□□ -0.75
USP54-208ENST00000461520 GRIK4Q16099 956 aa10.34□□□□□ -0.75
USP54-208ENST00000461520 NUTM2GQ5VZR2 741 aa10.34□□□□□ -0.75
USP54-208ENST00000461520 COL26A1Q96A83 441 aa10.34□□□□□ -0.75
USP54-208ENST00000461520 KCNMB2Q9Y691 235 aa10.34□□□□□ -0.75
USP54-208ENST00000461520 USP19O94966 1318 aa10.33□□□□□ -0.76
USP54-208ENST00000461520 EVC2Q86UK5 1308 aa10.33□□□□□ -0.76
USP54-208ENST00000461520 LOC100996750A0A140TA64 210 aa10.33□□□□□ -0.76
USP54-208ENST00000461520 TNFRSF10BO14763 440 aa10.33□□□□□ -0.76
USP54-208ENST00000461520 ZC3H6P61129 1189 aaKnown RBP10.33□□□□□ -0.76
USP54-208ENST00000461520 CHRNA2Q15822 529 aa10.33□□□□□ -0.76
USP54-208ENST00000461520 HFE2Q6ZVN8 426 aa10.33□□□□□ -0.76
USP54-208ENST00000461520 NLRP13Q86W25 1043 aa10.33□□□□□ -0.76
USP54-208ENST00000461520 CCDC82Q8N4S0 544 aa10.33□□□□□ -0.76
USP54-208ENST00000461520 TRPM4Q8TD43 1214 aa10.33□□□□□ -0.76
USP54-208ENST00000461520 KRTAP4-6Q9BYQ5 205 aa10.33□□□□□ -0.76
USP54-208ENST00000461520 ROCK2O75116 1388 aaKnown RBP10.33□□□□□ -0.76
USP54-208ENST00000461520 CPDO75976 1380 aa10.33□□□□□ -0.76
USP54-208ENST00000461520 QRICH2Q9H0J4 1663 aa10.33□□□□□ -0.76
USP54-208ENST00000461520 THSD7AQ9UPZ6 1657 aa10.33□□□□□ -0.76
USP54-208ENST00000461520 TRPM1Q7Z4N2 1603 aa10.33□□□□□ -0.76
USP54-208ENST00000461520 SPATA31A1Q5TZJ5 1347 aa10.33□□□□□ -0.76
USP54-208ENST00000461520 APBA3O96018 575 aa10.32□□□□□ -0.76
USP54-208ENST00000461520 EGFRP00533 1210 aa10.32□□□□□ -0.76
USP54-208ENST00000461520 GCP02774 474 aa10.32□□□□□ -0.76
USP54-208ENST00000461520 PLAURQ03405 335 aa10.32□□□□□ -0.76
USP54-208ENST00000461520 PERM1Q5SV97 790 aa10.32□□□□□ -0.76
USP54-208ENST00000461520 NRKQ7Z2Y5 1582 aa10.31□□□□□ -0.76
USP54-208ENST00000461520 K7ELQ4 463 aaPredicted RBP10.31□□□□□ -0.76
USP54-208ENST00000461520 PTCD1O75127 700 aaKnown RBP10.31□□□□□ -0.76
USP54-208ENST00000461520 GATA4P43694 442 aa10.31□□□□□ -0.76
USP54-208ENST00000461520 EVA1CP58658 441 aa10.31□□□□□ -0.76
USP54-208ENST00000461520 DOC2BQ14184 412 aa10.31□□□□□ -0.76
USP54-208ENST00000461520 R3HDM1Q15032 1099 aaKnown RBP10.31□□□□□ -0.76
USP54-208ENST00000461520 PCSK7Q16549 785 aa10.31□□□□□ -0.76
USP54-208ENST00000461520 DMRTC2Q8IXT2 367 aaPredicted RBP10.31□□□□□ -0.76
USP54-208ENST00000461520 LPIN3Q9BQK8 851 aa10.31□□□□□ -0.76
USP54-208ENST00000461520 USP6P35125 1406 aa10.31□□□□□ -0.76
USP54-208ENST00000461520 A0A0A0MRY4 1105 aa10.3□□□□□ -0.76
USP54-208ENST00000461520 ATP2B4P23634 1241 aa10.3□□□□□ -0.76
USP54-208ENST00000461520 GPLD1P80108 840 aa10.3□□□□□ -0.76
USP54-208ENST00000461520 C1orf115Q9H7X2 142 aa10.3□□□□□ -0.76
USP54-208ENST00000461520 TLR7Q9NYK1 1049 aaKnown RBP10.3□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 22.9 ms