RNA–Protein interactions for RNA: ENST00000460265.5

LMNB1-203, Transcript of lamin B1, humanhuman

TSL 1 (best)

Gene LMNB1, Length 3,475 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LMNB1-203ENST00000460265 CLSTN2Q9H4D0 955 aa17.8■□□□□ 0.44
LMNB1-203ENST00000460265 CLIP2Q9UDT6 1046 aa17.8■□□□□ 0.44
LMNB1-203ENST00000460265 CLIC4Q9Y696 253 aa17.8■□□□□ 0.44
LMNB1-203ENST00000460265 EXOSC10Q01780 885 aaKnown RBP17.8■□□□□ 0.44
LMNB1-203ENST00000460265 MEX3CQ5U5Q3 659 aaKnown RBP17.8■□□□□ 0.44
LMNB1-203ENST00000460265 DCCP43146 1447 aa17.8■□□□□ 0.44
LMNB1-203ENST00000460265 MARF1Q9Y4F3 1742 aaKnown RBP17.8■□□□□ 0.44
LMNB1-203ENST00000460265 CHRNDQ07001 517 aa17.8■□□□□ 0.44
LMNB1-203ENST00000460265 MRVI1Q9Y6F6 885 aa17.8■□□□□ 0.44
LMNB1-203ENST00000460265 TPM3P06753 285 aa17.79■□□□□ 0.44
LMNB1-203ENST00000460265 CEP57L1Q8IYX8 460 aa17.79■□□□□ 0.44
LMNB1-203ENST00000460265 IFNL3Q8IZI9 196 aa17.79■□□□□ 0.44
LMNB1-203ENST00000460265 MRPS27Q92552 414 aaKnown RBP17.79■□□□□ 0.44
LMNB1-203ENST00000460265 LMO7Q8WWI1 1683 aa17.79■□□□□ 0.44
LMNB1-203ENST00000460265 SSRP1Q08945 709 aaKnown RBP17.79■□□□□ 0.44
LMNB1-203ENST00000460265 NAA16Q6N069 864 aaPredicted RBP17.79■□□□□ 0.44
LMNB1-203ENST00000460265 TBC1D10CQ8IV04 446 aa17.79■□□□□ 0.44
LMNB1-203ENST00000460265 UBN2Q6ZU65 1347 aa17.79■□□□□ 0.44
LMNB1-203ENST00000460265 KDM3BQ7LBC6 1761 aa17.79■□□□□ 0.44
LMNB1-203ENST00000460265 ADAMTSL3P82987 1691 aa17.79■□□□□ 0.44
LMNB1-203ENST00000460265 WTAPQ15007 396 aa17.78■□□□□ 0.44
LMNB1-203ENST00000460265 IL17RAQ96F46 866 aa17.78■□□□□ 0.44
LMNB1-203ENST00000460265 NAT10Q9H0A0 1025 aaKnown RBP17.78■□□□□ 0.44
LMNB1-203ENST00000460265 SENP2Q9HC62 589 aa17.78■□□□□ 0.44
LMNB1-203ENST00000460265 ANKIB1Q9P2G1 1089 aa17.78■□□□□ 0.44
LMNB1-203ENST00000460265 CARMIL3Q8ND23 1372 aa17.78■□□□□ 0.44
LMNB1-203ENST00000460265 TNNT1P13805 278 aa17.78■□□□□ 0.44
LMNB1-203ENST00000460265 TPM4P67936 248 aa17.78■□□□□ 0.44
LMNB1-203ENST00000460265 AOPEPQ8N6M6 819 aa17.78■□□□□ 0.44
LMNB1-203ENST00000460265 FBXO3Q9UK99 471 aa17.78■□□□□ 0.44
LMNB1-203ENST00000460265 PCDHA7Q9UN72 937 aa17.78■□□□□ 0.44
LMNB1-203ENST00000460265 MROH5Q6ZUA9 1318 aa17.77■□□□□ 0.44
LMNB1-203ENST00000460265 WTIPA6NIX2 430 aaPredicted RBP17.77■□□□□ 0.44
LMNB1-203ENST00000460265 SLC3A2P08195 630 aaKnown RBP17.77■□□□□ 0.44
LMNB1-203ENST00000460265 CYB5R4Q7L1T6 521 aa17.77■□□□□ 0.44
LMNB1-203ENST00000460265 NRBP1Q9UHY1 535 aa17.77■□□□□ 0.44
LMNB1-203ENST00000460265 KCNJ14Q9UNX9 436 aa17.77■□□□□ 0.44
LMNB1-203ENST00000460265 UBAP1LF5GYI3 381 aa17.77■□□□□ 0.44
LMNB1-203ENST00000460265 GNPATO15228 680 aa17.77■□□□□ 0.44
LMNB1-203ENST00000460265 SETDB2Q96T68 719 aa17.77■□□□□ 0.44
LMNB1-203ENST00000460265 ANO10Q9NW15 660 aa17.77■□□□□ 0.44
LMNB1-203ENST00000460265 TPD52L1Q16890 204 aaPredicted RBP17.77■□□□□ 0.43
LMNB1-203ENST00000460265 MARCH10Q8NA82 808 aaPredicted RBP17.77■□□□□ 0.43
LMNB1-203ENST00000460265 KIF18AQ8NI77 898 aa17.77■□□□□ 0.43
LMNB1-203ENST00000460265 PALLDQ8WX93 1383 aa17.76■□□□□ 0.43
LMNB1-203ENST00000460265 CAPN2P17655 700 aa17.76■□□□□ 0.43
LMNB1-203ENST00000460265 LRMPQ12912 555 aa17.76■□□□□ 0.43
LMNB1-203ENST00000460265 ERFEQ4G0M1 354 aa17.76■□□□□ 0.43
LMNB1-203ENST00000460265 FBXO18Q8NFZ0 1043 aa17.76■□□□□ 0.43
LMNB1-203ENST00000460265 TSPYL1Q9H0U9 437 aa17.76■□□□□ 0.43
LMNB1-203ENST00000460265 ZSWIM5Q9P217 1185 aa17.76■□□□□ 0.43
LMNB1-203ENST00000460265 MORC2Q9Y6X9 1032 aaPredicted RBP17.76■□□□□ 0.43
LMNB1-203ENST00000460265 ITPK1Q13572 414 aa17.76■□□□□ 0.43
LMNB1-203ENST00000460265 KRT40Q6A162 431 aa17.76■□□□□ 0.43
LMNB1-203ENST00000460265 LCORLQ8N3X6 602 aa17.76■□□□□ 0.43
LMNB1-203ENST00000460265 RASSF8Q8NHQ8 419 aa17.76■□□□□ 0.43
LMNB1-203ENST00000460265 TRMT1Q9NXH9 659 aaKnown RBP17.76■□□□□ 0.43
LMNB1-203ENST00000460265 CYP2D7A0A087X1C5 515 aa17.75■□□□□ 0.43
LMNB1-203ENST00000460265 STX1AQ16623 288 aa17.75■□□□□ 0.43
LMNB1-203ENST00000460265 NLRP3Q96P20 1036 aa17.75■□□□□ 0.43
LMNB1-203ENST00000460265 NOL12Q9UGY1 213 aaKnown RBP eCLIP17.75■□□□□ 0.43
LMNB1-203ENST00000460265 V9GYY5 206 aaPredicted RBP17.75■□□□□ 0.43
LMNB1-203ENST00000460265 ELP1O95163 1332 aa17.75■□□□□ 0.43
LMNB1-203ENST00000460265 PATL2C9JE40 543 aaKnown RBP17.75■□□□□ 0.43
LMNB1-203ENST00000460265 FAM160A1Q05DH4 1040 aa17.75■□□□□ 0.43
LMNB1-203ENST00000460265 MYSM1Q5VVJ2 828 aa17.75■□□□□ 0.43
LMNB1-203ENST00000460265 MAGEB6P1A0A0J9YX57 407 aa17.75■□□□□ 0.43
LMNB1-203ENST00000460265 UBE2Q2LH0YL09 131 aa17.75■□□□□ 0.43
LMNB1-203ENST00000460265 SLC20A2Q08357 652 aa17.75■□□□□ 0.43
LMNB1-203ENST00000460265 PARP10Q53GL7 1025 aa17.75■□□□□ 0.43
LMNB1-203ENST00000460265 JMYQ8N9B5 988 aa17.75■□□□□ 0.43
LMNB1-203ENST00000460265 STRBPQ96SI9 672 aaKnown RBP17.75■□□□□ 0.43
LMNB1-203ENST00000460265 SRP68Q9UHB9 627 aaKnown RBP17.75■□□□□ 0.43
LMNB1-203ENST00000460265 SMTNL1A8MU46 457 aa17.74■□□□□ 0.43
LMNB1-203ENST00000460265 ERVV-1B6SEH8 477 aa17.74■□□□□ 0.43
LMNB1-203ENST00000460265 NDUFA8P51970 172 aa17.74■□□□□ 0.43
LMNB1-203ENST00000460265 UBE3CQ15386 1083 aa17.74■□□□□ 0.43
LMNB1-203ENST00000460265 RTN1Q16799 776 aa17.74■□□□□ 0.43
LMNB1-203ENST00000460265 SMARCC2Q8TAQ2 1214 aa17.74■□□□□ 0.43
LMNB1-203ENST00000460265 KCNF1Q9H3M0 494 aa17.74■□□□□ 0.43
LMNB1-203ENST00000460265 KIF1AQ12756 1690 aa17.74■□□□□ 0.43
LMNB1-203ENST00000460265 FDPSP14324 419 aaKnown RBP17.74■□□□□ 0.43
LMNB1-203ENST00000460265 EIF5P55010 431 aaKnown RBP17.74■□□□□ 0.43
LMNB1-203ENST00000460265 ANTXR2P58335 489 aa17.74■□□□□ 0.43
LMNB1-203ENST00000460265 ANO1Q5XXA6 986 aa17.74■□□□□ 0.43
LMNB1-203ENST00000460265 APOA5Q6Q788 366 aa17.74■□□□□ 0.43
LMNB1-203ENST00000460265 ALDH8A1Q9H2A2 487 aaPredicted RBP17.74■□□□□ 0.43
LMNB1-203ENST00000460265 GOLPH3LQ9H4A5 285 aa17.74■□□□□ 0.43
LMNB1-203ENST00000460265 CTAGE5O15320 804 aa17.73■□□□□ 0.43
LMNB1-203ENST00000460265 SYKP43405 635 aa17.73■□□□□ 0.43
LMNB1-203ENST00000460265 MB21D2Q8IYB1 491 aaPredicted RBP17.73■□□□□ 0.43
LMNB1-203ENST00000460265 KCNG4Q8TDN1 519 aa17.73■□□□□ 0.43
LMNB1-203ENST00000460265 RCOR1Q9UKL0 485 aa17.73■□□□□ 0.43
LMNB1-203ENST00000460265 LMOD1P29536 600 aaPredicted RBP17.73■□□□□ 0.43
LMNB1-203ENST00000460265 AKNAD1Q5T1N1 836 aa17.73■□□□□ 0.43
LMNB1-203ENST00000460265 C11orf57Q6ZUT1 292 aaPredicted RBP17.73■□□□□ 0.43
LMNB1-203ENST00000460265 CLIC6Q96NY7 704 aa17.73■□□□□ 0.43
LMNB1-203ENST00000460265 NRDCO43847 1150 aa17.73■□□□□ 0.43
LMNB1-203ENST00000460265 RAD21O60216 631 aa17.73■□□□□ 0.43
LMNB1-203ENST00000460265 DYNLL1P63167 89 aaKnown RBP17.73■□□□□ 0.43
Retrieved 100 of 20,778 RNA–protein pairs in 18.6 ms