RNA–Protein interactions for RNA: ENST00000459775.5

USP39-210, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 2

Gene USP39, Length 2,148 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-210ENST00000459775 PCDHAC2Q9Y5I4 1007 aa12.37□□□□□ -0.43
USP39-210ENST00000459775 AK9Q5TCS8 1911 aa12.37□□□□□ -0.43
USP39-210ENST00000459775 FOXP2O15409 715 aa12.37□□□□□ -0.43
USP39-210ENST00000459775 IARSP41252 1262 aaKnown RBP12.37□□□□□ -0.43
USP39-210ENST00000459775 WDR66Q8TBY9 1149 aa12.37□□□□□ -0.43
USP39-210ENST00000459775 C22orf23Q9BZE7 217 aa12.37□□□□□ -0.43
USP39-210ENST00000459775 ARMT1Q9H993 441 aa12.37□□□□□ -0.43
USP39-210ENST00000459775 CREBZFQ9NS37 354 aa12.37□□□□□ -0.43
USP39-210ENST00000459775 PALD1Q9ULE6 856 aa12.37□□□□□ -0.43
USP39-210ENST00000459775 TAF6LQ9Y6J9 622 aa12.37□□□□□ -0.43
USP39-210ENST00000459775 PRKAB2O43741 272 aa12.36□□□□□ -0.43
USP39-210ENST00000459775 SLC34A2O95436 690 aa12.36□□□□□ -0.43
USP39-210ENST00000459775 LDHBP07195 334 aaKnown RBP12.36□□□□□ -0.43
USP39-210ENST00000459775 SCNN1DP51172 638 aa12.36□□□□□ -0.43
USP39-210ENST00000459775 DPY19L2Q6NUT2 758 aa12.36□□□□□ -0.43
USP39-210ENST00000459775 SUPT20HQ8NEM7 779 aa12.36□□□□□ -0.43
USP39-210ENST00000459775 APPBP2Q92624 585 aa12.36□□□□□ -0.43
USP39-210ENST00000459775 ZBTB12Q9Y330 459 aaPredicted RBP12.36□□□□□ -0.43
USP39-210ENST00000459775 HIP1O00291 1037 aa12.35□□□□□ -0.43
USP39-210ENST00000459775 MBD4O95243 580 aa12.35□□□□□ -0.43
USP39-210ENST00000459775 NAA16Q6N069 864 aaPredicted RBP12.35□□□□□ -0.43
USP39-210ENST00000459775 PODNQ7Z5L7 613 aa12.35□□□□□ -0.43
USP39-210ENST00000459775 LCORLQ8N3X6 602 aa12.35□□□□□ -0.43
USP39-210ENST00000459775 RUFY2Q8WXA3 655 aa12.35□□□□□ -0.43
USP39-210ENST00000459775 FAM205AQ6ZU69 1335 aa12.35□□□□□ -0.43
USP39-210ENST00000459775 GPAA1O43292 621 aa12.35□□□□□ -0.43
USP39-210ENST00000459775 COL9A3Q14050 684 aaPredicted RBP12.35□□□□□ -0.43
USP39-210ENST00000459775 UBE3CQ15386 1083 aa12.35□□□□□ -0.43
USP39-210ENST00000459775 DACT2Q5SW24 774 aa12.35□□□□□ -0.43
USP39-210ENST00000459775 SOGA3Q5TF21 947 aa12.35□□□□□ -0.43
USP39-210ENST00000459775 DZIP1Q86YF9 867 aaKnown RBP12.35□□□□□ -0.43
USP39-210ENST00000459775 KIAA0825Q8IV33 1275 aa12.35□□□□□ -0.43
USP39-210ENST00000459775 TBC1D32Q96NH3 1257 aa12.35□□□□□ -0.43
USP39-210ENST00000459775 HELLSQ9NRZ9 838 aa12.35□□□□□ -0.43
USP39-210ENST00000459775 SCN9AQ15858 1988 aa12.34□□□□□ -0.43
USP39-210ENST00000459775 PDS5AQ29RF7 1337 aaKnown RBP12.34□□□□□ -0.43
USP39-210ENST00000459775 CCDC171Q6TFL3 1326 aa12.34□□□□□ -0.43
USP39-210ENST00000459775 SMIM22K7EJ46 135 aa12.34□□□□□ -0.43
USP39-210ENST00000459775 PSMD14O00487 310 aa12.34□□□□□ -0.43
USP39-210ENST00000459775 REC8O95072 547 aa12.34□□□□□ -0.43
USP39-210ENST00000459775 ZFYP08048 801 aaPredicted RBP12.34□□□□□ -0.43
USP39-210ENST00000459775 AATFQ9NY61 560 aaKnown RBP eCLIP12.34□□□□□ -0.43
USP39-210ENST00000459775 SHTN1A0MZ66 631 aa12.34□□□□□ -0.43
USP39-210ENST00000459775 USP17L3A6NCW0 530 aa12.34□□□□□ -0.43
USP39-210ENST00000459775 USP17L4A6NCW7 530 aa12.34□□□□□ -0.43
USP39-210ENST00000459775 KDM4AO75164 1064 aa12.34□□□□□ -0.43
USP39-210ENST00000459775 HSPD1P10809 573 aaKnown RBP12.34□□□□□ -0.43
USP39-210ENST00000459775 CXCL9Q07325 125 aa12.34□□□□□ -0.43
USP39-210ENST00000459775 KIAA1211Q6ZU35 1233 aa12.34□□□□□ -0.43
USP39-210ENST00000459775 USP17L1Q7RTZ2 530 aa12.34□□□□□ -0.43
USP39-210ENST00000459775 RASEFQ8IZ41 740 aa12.34□□□□□ -0.43
USP39-210ENST00000459775 TTF2Q9UNY4 1162 aaKnown RBP12.34□□□□□ -0.43
USP39-210ENST00000459775 SALL1Q9NSC2 1324 aa12.33□□□□□ -0.44
USP39-210ENST00000459775 ZSCAN25Q6NSZ9 544 aa12.33□□□□□ -0.44
USP39-210ENST00000459775 NIM1KQ8IY84 436 aa12.33□□□□□ -0.44
USP39-210ENST00000459775 SDR42E1Q8WUS8 393 aa12.33□□□□□ -0.44
USP39-210ENST00000459775 AIDAQ96BJ3 306 aa12.33□□□□□ -0.44
USP39-210ENST00000459775 STRBPQ96SI9 672 aaKnown RBP12.33□□□□□ -0.44
USP39-210ENST00000459775 KIF2CQ99661 725 aa12.33□□□□□ -0.44
USP39-210ENST00000459775 UPF2Q9HAU5 1272 aaKnown RBP12.33□□□□□ -0.44
USP39-210ENST00000459775 ZNRF3Q9ULT6 936 aa12.33□□□□□ -0.44
USP39-210ENST00000459775 RBM8AQ9Y5S9 174 aaKnown RBP12.33□□□□□ -0.44
USP39-210ENST00000459775 RFX7Q2KHR2 1363 aa12.33□□□□□ -0.44
USP39-210ENST00000459775 EVX2Q03828 476 aa12.32□□□□□ -0.44
USP39-210ENST00000459775 SLC4A8Q2Y0W8 1093 aa12.32□□□□□ -0.44
USP39-210ENST00000459775 MAP4K1Q92918 833 aa12.32□□□□□ -0.44
USP39-210ENST00000459775 RIOK1Q9BRS2 568 aaKnown RBP12.32□□□□□ -0.44
USP39-210ENST00000459775 RAD50Q92878 1312 aa12.32□□□□□ -0.44
USP39-210ENST00000459775 MAGEB6P1A0A0J9YX57 407 aa12.32□□□□□ -0.44
USP39-210ENST00000459775 APPP05067 770 aa12.32□□□□□ -0.44
USP39-210ENST00000459775 STRIP1Q5VSL9 837 aa12.32□□□□□ -0.44
USP39-210ENST00000459775 SPTY2D1Q68D10 685 aaPredicted RBP12.32□□□□□ -0.44
USP39-210ENST00000459775 CHADLQ6NUI6 762 aa12.32□□□□□ -0.44
USP39-210ENST00000459775 EXOC8Q8IYI6 725 aa12.32□□□□□ -0.44
USP39-210ENST00000459775 JDP2Q8WYK2 163 aa12.32□□□□□ -0.44
USP39-210ENST00000459775 LTBP3Q9NS15 1303 aa12.32□□□□□ -0.44
USP39-210ENST00000459775 CNTNAP1P78357 1384 aa12.31□□□□□ -0.44
USP39-210ENST00000459775 CTCFP49711 727 aaPredicted RBP12.31□□□□□ -0.44
USP39-210ENST00000459775 HAND2P61296 217 aa12.31□□□□□ -0.44
USP39-210ENST00000459775 LRRFIP1Q32MZ4 808 aaKnown RBP12.31□□□□□ -0.44
USP39-210ENST00000459775 STK11IPQ8N1F8 1099 aa12.31□□□□□ -0.44
USP39-210ENST00000459775 ZGPATQ8N5A5 531 aaKnown RBP12.31□□□□□ -0.44
USP39-210ENST00000459775 EPB41L4AQ9HCS5 686 aaPredicted RBP12.31□□□□□ -0.44
USP39-210ENST00000459775 MYH13Q9UKX3 1938 aa12.31□□□□□ -0.44
USP39-210ENST00000459775 DOCK2Q92608 1830 aa12.31□□□□□ -0.44
USP39-210ENST00000459775 FER1L6Q2WGJ9 1857 aa12.31□□□□□ -0.44
USP39-210ENST00000459775 CPA1P15085 419 aa12.31□□□□□ -0.44
USP39-210ENST00000459775 MMP14P50281 582 aa12.31□□□□□ -0.44
USP39-210ENST00000459775 SH3RF3Q8TEJ3 882 aaPredicted RBP12.31□□□□□ -0.44
USP39-210ENST00000459775 TBC1D22AQ8WUA7 517 aa12.31□□□□□ -0.44
USP39-210ENST00000459775 PCDH10Q9P2E7 1040 aa12.31□□□□□ -0.44
USP39-210ENST00000459775 SLC4A4Q9Y6R1 1079 aa12.31□□□□□ -0.44
USP39-210ENST00000459775 ZNF541Q9H0D2 1346 aa12.3□□□□□ -0.44
USP39-210ENST00000459775 CYP2D7A0A087X1C5 515 aa12.3□□□□□ -0.44
USP39-210ENST00000459775 GSG1L2A8MUP6 293 aa12.3□□□□□ -0.44
USP39-210ENST00000459775 FGAP02671 866 aa12.3□□□□□ -0.44
USP39-210ENST00000459775 BTDP43251 543 aa12.3□□□□□ -0.44
USP39-210ENST00000459775 NECTIN1Q15223 517 aa12.3□□□□□ -0.44
USP39-210ENST00000459775 INCENPQ9NQS7 918 aa12.3□□□□□ -0.44
USP39-210ENST00000459775 DAGLAQ9Y4D2 1042 aa12.3□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 223.8 ms