RNA–Protein interactions for RNA: ENST00000448833.5

VPS41-208, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 1 (best)

Gene VPS41, Length 711 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-208ENST00000448833 ZBTB4Q9P1Z0 1013 aaPredicted RBP8.78□□□□□ -1
VPS41-208ENST00000448833 SALL1Q9NSC2 1324 aa8.78□□□□□ -1
VPS41-208ENST00000448833 SSC5DA1L4H1 1573 aa8.78□□□□□ -1
VPS41-208ENST00000448833 RPAP1Q9BWH6 1393 aaPredicted RBP8.77□□□□□ -1.01
VPS41-208ENST00000448833 CETPP11597 493 aa8.77□□□□□ -1.01
VPS41-208ENST00000448833 RARSP54136 660 aaKnown RBP8.77□□□□□ -1.01
VPS41-208ENST00000448833 SP3Q02447 781 aa8.77□□□□□ -1.01
VPS41-208ENST00000448833 VGLL4Q14135 290 aa8.77□□□□□ -1.01
VPS41-208ENST00000448833 APOBEC3HQ6NTF7 200 aaKnown RBP8.77□□□□□ -1.01
VPS41-208ENST00000448833 PPP1R3FQ6ZSY5 799 aaPredicted RBP8.77□□□□□ -1.01
VPS41-208ENST00000448833 ERO1BQ86YB8 467 aa8.77□□□□□ -1.01
VPS41-208ENST00000448833 DDX55Q8NHQ9 600 aaKnown RBP eCLIP8.77□□□□□ -1.01
VPS41-208ENST00000448833 FAM151AQ8WW52 585 aa8.77□□□□□ -1.01
VPS41-208ENST00000448833 ZNF341Q9BYN7 854 aa8.77□□□□□ -1.01
VPS41-208ENST00000448833 SIL1Q9H173 461 aa8.77□□□□□ -1.01
VPS41-208ENST00000448833 ELP3Q9H9T3 547 aa8.77□□□□□ -1.01
VPS41-208ENST00000448833 FZD1Q9UP38 647 aa8.77□□□□□ -1.01
VPS41-208ENST00000448833 PDS5AQ29RF7 1337 aaKnown RBP8.77□□□□□ -1.01
VPS41-208ENST00000448833 SPDYE5A6NIY4 337 aa8.76□□□□□ -1.01
VPS41-208ENST00000448833 IGF2BP3O00425 579 aaKnown RBP eCLIP8.76□□□□□ -1.01
VPS41-208ENST00000448833 SRGAP3O43295 1099 aa8.76□□□□□ -1.01
VPS41-208ENST00000448833 MAP4K4O95819 1239 aaPredicted RBP8.76□□□□□ -1.01
VPS41-208ENST00000448833 GNRH1P01148 92 aa8.76□□□□□ -1.01
VPS41-208ENST00000448833 PPATQ06203 517 aa8.76□□□□□ -1.01
VPS41-208ENST00000448833 CRHR2Q13324 411 aa8.76□□□□□ -1.01
VPS41-208ENST00000448833 SNAPC2Q13487 334 aa8.76□□□□□ -1.01
VPS41-208ENST00000448833 MVPQ14764 893 aaKnown RBP8.76□□□□□ -1.01
VPS41-208ENST00000448833 KIF22Q14807 665 aa8.76□□□□□ -1.01
VPS41-208ENST00000448833 NBPF11Q86T75 865 aa8.76□□□□□ -1.01
VPS41-208ENST00000448833 MS4A4AQ96JQ5 239 aa8.76□□□□□ -1.01
VPS41-208ENST00000448833 WRNIP1Q96S55 665 aa8.76□□□□□ -1.01
VPS41-208ENST00000448833 EFCC1Q9HA90 598 aa8.76□□□□□ -1.01
VPS41-208ENST00000448833 TRIM17Q9Y577 477 aa8.76□□□□□ -1.01
VPS41-208ENST00000448833 LRRFIP2Q9Y608 721 aaKnown RBP8.76□□□□□ -1.01
VPS41-208ENST00000448833 PDE4DIPQ5VU43 2346 aa8.75□□□□□ -1.01
VPS41-208ENST00000448833 CCL15-CCL14A0A0B4J2E2 113 aa8.75□□□□□ -1.01
VPS41-208ENST00000448833 IGSF3O75054 1194 aa8.75□□□□□ -1.01
VPS41-208ENST00000448833 GNAI2P04899 355 aa8.75□□□□□ -1.01
VPS41-208ENST00000448833 SOX10P56693 466 aa8.75□□□□□ -1.01
VPS41-208ENST00000448833 PPIL2Q13356 520 aa8.75□□□□□ -1.01
VPS41-208ENST00000448833 MTX1Q13505 466 aa8.75□□□□□ -1.01
VPS41-208ENST00000448833 TAF1CQ15572 869 aaPredicted RBP8.75□□□□□ -1.01
VPS41-208ENST00000448833 CCL15Q16663 113 aa8.75□□□□□ -1.01
VPS41-208ENST00000448833 GORABQ5T7V8 394 aa8.75□□□□□ -1.01
VPS41-208ENST00000448833 OTOP1Q7RTM1 612 aa8.75□□□□□ -1.01
VPS41-208ENST00000448833 DZIP1Q86YF9 867 aaKnown RBP8.75□□□□□ -1.01
VPS41-208ENST00000448833 OTUD5Q96G74 571 aa8.75□□□□□ -1.01
VPS41-208ENST00000448833 USP40Q9NVE5 1235 aa8.75□□□□□ -1.01
VPS41-208ENST00000448833 AOX1Q06278 1338 aa8.75□□□□□ -1.01
VPS41-208ENST00000448833 RBBP6Q7Z6E9 1792 aaKnown RBP8.74□□□□□ -1.01
VPS41-208ENST00000448833 CENPFP49454 3210 aa8.74□□□□□ -1.01
VPS41-208ENST00000448833 ENTPD3O75355 529 aa8.74□□□□□ -1.01
VPS41-208ENST00000448833 LDHCP07864 332 aa8.74□□□□□ -1.01
VPS41-208ENST00000448833 GJA5P36382 358 aa8.74□□□□□ -1.01
VPS41-208ENST00000448833 CACNB3P54284 484 aa8.74□□□□□ -1.01
VPS41-208ENST00000448833 PRMT2P55345 433 aa8.74□□□□□ -1.01
VPS41-208ENST00000448833 GSTO1P78417 241 aa8.74□□□□□ -1.01
VPS41-208ENST00000448833 G3BP1Q13283 466 aaKnown RBP eCLIP8.74□□□□□ -1.01
VPS41-208ENST00000448833 GRIK5Q16478 980 aa8.74□□□□□ -1.01
VPS41-208ENST00000448833 CCDC102BQ68D86 513 aa8.74□□□□□ -1.01
VPS41-208ENST00000448833 CDC42EP5Q6NZY7 148 aa8.74□□□□□ -1.01
VPS41-208ENST00000448833 ATF7IPQ6VMQ6 1270 aa8.74□□□□□ -1.01
VPS41-208ENST00000448833 FAM163AQ96GL9 167 aaPredicted RBP8.74□□□□□ -1.01
VPS41-208ENST00000448833 MEIS3Q99687 375 aa8.74□□□□□ -1.01
VPS41-208ENST00000448833 PTPN18Q99952 460 aa8.74□□□□□ -1.01
VPS41-208ENST00000448833 R3HDMLQ9H3Y0 253 aa8.74□□□□□ -1.01
VPS41-208ENST00000448833 RTN4Q9NQC3 1192 aaKnown RBP8.74□□□□□ -1.01
VPS41-208ENST00000448833 PTPN22Q9Y2R2 807 aa8.74□□□□□ -1.01
VPS41-208ENST00000448833 DAGLAQ9Y4D2 1042 aa8.74□□□□□ -1.01
VPS41-208ENST00000448833 DOCK2Q92608 1830 aa8.73□□□□□ -1.01
VPS41-208ENST00000448833 A0A1B0GUL7 405 aa8.73□□□□□ -1.01
VPS41-208ENST00000448833 IRF6O14896 467 aa8.73□□□□□ -1.01
VPS41-208ENST00000448833 TLR2O60603 784 aa8.73□□□□□ -1.01
VPS41-208ENST00000448833 HOXD10P28358 340 aa8.73□□□□□ -1.01
VPS41-208ENST00000448833 PRDX5P30044 214 aa8.73□□□□□ -1.01
VPS41-208ENST00000448833 PHKA1P46020 1223 aa8.73□□□□□ -1.01
VPS41-208ENST00000448833 TIMM10P62072 90 aa8.73□□□□□ -1.01
VPS41-208ENST00000448833 TCP10Q12799 353 aa8.73□□□□□ -1.01
VPS41-208ENST00000448833 ERICH6Q7L0X2 663 aa8.73□□□□□ -1.01
VPS41-208ENST00000448833 CD99L2Q8TCZ2 262 aa8.73□□□□□ -1.01
VPS41-208ENST00000448833 BRI3BPQ8WY22 251 aa8.73□□□□□ -1.01
VPS41-208ENST00000448833 FRAT1Q92837 279 aaPredicted RBP8.73□□□□□ -1.01
VPS41-208ENST00000448833 ZKSCAN4Q969J2 545 aaPredicted RBP8.73□□□□□ -1.01
VPS41-208ENST00000448833 NEUROD6Q96NK8 337 aa8.73□□□□□ -1.01
VPS41-208ENST00000448833 TMEM106CQ9BVX2 250 aa8.73□□□□□ -1.01
VPS41-208ENST00000448833 IDI2Q9BXS1 227 aa8.73□□□□□ -1.01
VPS41-208ENST00000448833 ABCF2Q9UG63 623 aa8.73□□□□□ -1.01
VPS41-208ENST00000448833 ZNF112Q9UJU3 913 aa8.73□□□□□ -1.01
VPS41-208ENST00000448833 SNCAIPQ9Y6H5 919 aa8.73□□□□□ -1.01
VPS41-208ENST00000448833 CXCL11O14625 94 aa8.72□□□□□ -1.01
VPS41-208ENST00000448833 UQCRFS1P1P0C7P4 283 aa8.72□□□□□ -1.01
VPS41-208ENST00000448833 DIXDC1Q155Q3 683 aa8.72□□□□□ -1.01
VPS41-208ENST00000448833 NOL9Q5SY16 702 aaKnown RBP8.72□□□□□ -1.01
VPS41-208ENST00000448833 ZKSCAN2Q63HK3 967 aa8.72□□□□□ -1.01
VPS41-208ENST00000448833 MIGA2Q7L4E1 593 aa8.72□□□□□ -1.01
VPS41-208ENST00000448833 FASTKD5Q7L8L6 764 aaKnown RBP8.72□□□□□ -1.01
VPS41-208ENST00000448833 ANKRD23Q86SG2 305 aa8.72□□□□□ -1.01
VPS41-208ENST00000448833 ZSCAN29Q8IWY8 852 aaPredicted RBP8.72□□□□□ -1.01
VPS41-208ENST00000448833 PIP4P2Q8N4L2 257 aa8.72□□□□□ -1.01
VPS41-208ENST00000448833 XAGE2Q96GT9 111 aa8.72□□□□□ -1.01
Retrieved 100 of 20,778 RNA–protein pairs in 13.9 ms