RNA–Protein interactions for RNA: ENST00000448038.2

SYNE1-213, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 6,001 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-213ENST00000448038 SH2D4AQ9H788 454 aa8.5□□□□□ -1.05
SYNE1-213ENST00000448038 NCOA5Q9HCD5 579 aaKnown RBP8.5□□□□□ -1.05
SYNE1-213ENST00000448038 GPCPD1Q9NPB8 672 aa8.5□□□□□ -1.05
SYNE1-213ENST00000448038 NARFQ9UHQ1 456 aa8.5□□□□□ -1.05
SYNE1-213ENST00000448038 SPATA31A1Q5TZJ5 1347 aa8.5□□□□□ -1.05
SYNE1-213ENST00000448038 USP17L12C9JPN9 530 aa8.49□□□□□ -1.05
SYNE1-213ENST00000448038 USP17L21D6R901 530 aa8.49□□□□□ -1.05
SYNE1-213ENST00000448038 SYT1P21579 422 aa8.49□□□□□ -1.05
SYNE1-213ENST00000448038 GNA11P29992 359 aa8.49□□□□□ -1.05
SYNE1-213ENST00000448038 SCLT1Q96NL6 688 aa8.49□□□□□ -1.05
SYNE1-213ENST00000448038 COL15A1P39059 1388 aa8.49□□□□□ -1.05
SYNE1-213ENST00000448038 SPDYE3A6NKU9 549 aa8.49□□□□□ -1.05
SYNE1-213ENST00000448038 POLA2Q14181 598 aa8.49□□□□□ -1.05
SYNE1-213ENST00000448038 PLS1Q14651 629 aa8.49□□□□□ -1.05
SYNE1-213ENST00000448038 AKNAD1Q5T1N1 836 aa8.49□□□□□ -1.05
SYNE1-213ENST00000448038 KIAA0825Q8IV33 1275 aa8.49□□□□□ -1.05
SYNE1-213ENST00000448038 OSBPL3Q9H4L5 887 aa8.49□□□□□ -1.05
SYNE1-213ENST00000448038 PPARAQ07869 468 aa8.49□□□□□ -1.05
SYNE1-213ENST00000448038 MPHOSPH6Q99547 160 aaKnown RBP8.49□□□□□ -1.05
SYNE1-213ENST00000448038 SPTLC2O15270 562 aa8.49□□□□□ -1.05
SYNE1-213ENST00000448038 KIF20AO95235 890 aa8.49□□□□□ -1.05
SYNE1-213ENST00000448038 HSPD1P10809 573 aaKnown RBP8.49□□□□□ -1.05
SYNE1-213ENST00000448038 TMC4Q7Z404 712 aa8.49□□□□□ -1.05
SYNE1-213ENST00000448038 IFNL3Q8IZI9 196 aa8.49□□□□□ -1.05
SYNE1-213ENST00000448038 SDR42E1Q8WUS8 393 aa8.49□□□□□ -1.05
SYNE1-213ENST00000448038 ITSN1Q15811 1721 aa8.49□□□□□ -1.05
SYNE1-213ENST00000448038 SSH2Q76I76 1423 aa8.49□□□□□ -1.05
SYNE1-213ENST00000448038 MMP10P09238 476 aa8.49□□□□□ -1.05
SYNE1-213ENST00000448038 SCNN1DP51172 638 aa8.49□□□□□ -1.05
SYNE1-213ENST00000448038 NOM1Q5C9Z4 860 aaKnown RBP8.49□□□□□ -1.05
SYNE1-213ENST00000448038 ISM2Q6H9L7 571 aa8.49□□□□□ -1.05
SYNE1-213ENST00000448038 MRPS27Q92552 414 aaKnown RBP8.49□□□□□ -1.05
SYNE1-213ENST00000448038 ARHGEF10LQ9HCE6 1279 aa8.49□□□□□ -1.05
SYNE1-213ENST00000448038 ARPP21Q9UBL0 812 aaPredicted RBP8.49□□□□□ -1.05
SYNE1-213ENST00000448038 SASH1O94885 1247 aa8.48□□□□□ -1.05
SYNE1-213ENST00000448038 GRM1Q13255 1194 aa8.48□□□□□ -1.05
SYNE1-213ENST00000448038 EPHA10Q5JZY3 1008 aa8.48□□□□□ -1.05
SYNE1-213ENST00000448038 BRAPQ7Z569 592 aa8.48□□□□□ -1.05
SYNE1-213ENST00000448038 ERMNQ8TAM6 284 aa8.48□□□□□ -1.05
SYNE1-213ENST00000448038 LUC7LQ9NQ29 371 aaKnown RBP8.48□□□□□ -1.05
SYNE1-213ENST00000448038 MYCNP04198 464 aaPredicted RBP8.48□□□□□ -1.05
SYNE1-213ENST00000448038 TFAP4Q01664 338 aa8.48□□□□□ -1.05
SYNE1-213ENST00000448038 UBE3CQ15386 1083 aa8.48□□□□□ -1.05
SYNE1-213ENST00000448038 STX1AQ16623 288 aa8.48□□□□□ -1.05
SYNE1-213ENST00000448038 MYL10Q9BUA6 226 aa8.48□□□□□ -1.05
SYNE1-213ENST00000448038 TM6SF1Q9BZW5 370 aa8.48□□□□□ -1.05
SYNE1-213ENST00000448038 PICK1Q9NRD5 415 aa8.48□□□□□ -1.05
SYNE1-213ENST00000448038 BRPF3Q9ULD4 1205 aa8.48□□□□□ -1.05
SYNE1-213ENST00000448038 DCCP43146 1447 aa8.48□□□□□ -1.05
SYNE1-213ENST00000448038 REREQ9P2R6 1566 aa8.48□□□□□ -1.05
SYNE1-213ENST00000448038 DEXIO95424 95 aa8.48□□□□□ -1.05
SYNE1-213ENST00000448038 LLPHQ9BRT6 129 aaKnown RBP8.48□□□□□ -1.05
SYNE1-213ENST00000448038 NBPF26B4DH59 902 aa8.48□□□□□ -1.05
SYNE1-213ENST00000448038 SEMA3EO15041 775 aa8.48□□□□□ -1.05
SYNE1-213ENST00000448038 NBPF10Q6P3W6 841 aaKnown RBP8.48□□□□□ -1.05
SYNE1-213ENST00000448038 GIMAP6Q6P9H5 292 aa8.48□□□□□ -1.05
SYNE1-213ENST00000448038 NBPF15Q8N660 670 aa8.48□□□□□ -1.05
SYNE1-213ENST00000448038 V9GY48 417 aaPredicted RBP8.48□□□□□ -1.05
SYNE1-213ENST00000448038 FGFR1OPO95684 399 aaKnown RBP8.48□□□□□ -1.05
SYNE1-213ENST00000448038 FAM47AQ5JRC9 791 aa8.48□□□□□ -1.05
SYNE1-213ENST00000448038 SYNE4Q8N205 404 aa8.48□□□□□ -1.05
SYNE1-213ENST00000448038 CAGE1Q8TC20 777 aa8.48□□□□□ -1.05
SYNE1-213ENST00000448038 SLIT1O75093 1534 aa8.47□□□□□ -1.05
SYNE1-213ENST00000448038 H7C1D1 291 aa8.47□□□□□ -1.05
SYNE1-213ENST00000448038 FGAP02671 866 aa8.47□□□□□ -1.05
SYNE1-213ENST00000448038 STAT6P42226 847 aa8.47□□□□□ -1.05
SYNE1-213ENST00000448038 AFMP43652 599 aa8.47□□□□□ -1.05
SYNE1-213ENST00000448038 ARHGEF1Q92888 912 aaKnown RBP8.47□□□□□ -1.05
SYNE1-213ENST00000448038 USP32Q8NFA0 1604 aa8.47□□□□□ -1.05
SYNE1-213ENST00000448038 ATP10DQ9P241 1426 aa8.47□□□□□ -1.05
SYNE1-213ENST00000448038 IBSPP21815 317 aaPredicted RBP8.47□□□□□ -1.05
SYNE1-213ENST00000448038 MCM7P33993 719 aa8.47□□□□□ -1.05
SYNE1-213ENST00000448038 GRAPQ13588 217 aa8.47□□□□□ -1.05
SYNE1-213ENST00000448038 GRAPLQ8TC17 118 aaPredicted RBP8.47□□□□□ -1.05
SYNE1-213ENST00000448038 LRRC27Q9C0I9 530 aa8.47□□□□□ -1.05
SYNE1-213ENST00000448038 ADRA2BP18089 450 aa8.47□□□□□ -1.05
SYNE1-213ENST00000448038 BTDP43251 543 aa8.47□□□□□ -1.05
SYNE1-213ENST00000448038 ZNF165P49910 485 aa8.47□□□□□ -1.05
SYNE1-213ENST00000448038 ZYXQ15942 572 aaKnown RBP8.47□□□□□ -1.05
SYNE1-213ENST00000448038 SLC27A3Q5K4L6 730 aa8.47□□□□□ -1.05
SYNE1-213ENST00000448038 ARHGAP27Q6ZUM4 889 aa8.47□□□□□ -1.05
SYNE1-213ENST00000448038 MARCH10Q8NA82 808 aaPredicted RBP8.47□□□□□ -1.05
SYNE1-213ENST00000448038 ANTXR1Q9H6X2 564 aa8.47□□□□□ -1.05
SYNE1-213ENST00000448038 DACT1Q9NYF0 836 aa8.47□□□□□ -1.05
SYNE1-213ENST00000448038 FKBP15Q5T1M5 1219 aa8.47□□□□□ -1.05
SYNE1-213ENST00000448038 TBC1D9BQ66K14 1250 aa8.47□□□□□ -1.05
SYNE1-213ENST00000448038 BSDC1Q9NW68 430 aaPredicted RBP8.47□□□□□ -1.05
SYNE1-213ENST00000448038 ATF5Q9Y2D1 282 aaPredicted RBP8.47□□□□□ -1.05
SYNE1-213ENST00000448038 MST1RQ04912 1400 aa8.47□□□□□ -1.05
SYNE1-213ENST00000448038 TXNRD1Q16881 649 aa8.46□□□□□ -1.05
SYNE1-213ENST00000448038 ZMYM1Q5SVZ6 1142 aa8.46□□□□□ -1.05
SYNE1-213ENST00000448038 PI16Q6UXB8 463 aa8.46□□□□□ -1.05
SYNE1-213ENST00000448038 LIG1P18858 919 aa8.46□□□□□ -1.05
SYNE1-213ENST00000448038 HOOK2Q96ED9 719 aa8.46□□□□□ -1.05
SYNE1-213ENST00000448038 ISCA1Q9BUE6 129 aa8.46□□□□□ -1.05
SYNE1-213ENST00000448038 SEPT11Q9NVA2 429 aaKnown RBP8.46□□□□□ -1.05
SYNE1-213ENST00000448038 PALD1Q9ULE6 856 aa8.46□□□□□ -1.05
SYNE1-213ENST00000448038 SPATA31A5Q5VU36 1347 aa8.46□□□□□ -1.05
SYNE1-213ENST00000448038 SPATA31A7Q8IWB4 1347 aa8.46□□□□□ -1.05
SYNE1-213ENST00000448038 NPR1P16066 1061 aa8.46□□□□□ -1.06
Retrieved 100 of 20,778 RNA–protein pairs in 28 ms